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bio-nexus-api / tests

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History: 17 commits

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__init__.py

0 Bytes
Deploy backend with pip-installed OpenMM 8.x, Rg/SASA/temp traces 13 days ago
conftest.py

4.56 kB
Deploy backend with pip-installed OpenMM 8.x, Rg/SASA/temp traces 13 days ago
test_alignment_pairwise.py

8.52 kB
feat(alignment): pairwise global/local alignment (3a) 10 days ago
test_blast_comprehensive.py

19.7 kB
Deploy backend with pip-installed OpenMM 8.x, Rg/SASA/temp traces 13 days ago
test_blast_config.py

4.86 kB
fix(blast): poll cap 65min, DNA validation, program/db/max_hits params 10 days ago
test_blast_resilience.py

9.78 kB
Upload folder using huggingface_hub about 16 hours ago
test_ebi_msa.py

3.05 kB
feat(alignment): multi-method MSA via shared EBI runner (clustalo/muscle/kalign/mafft/tcoffee) (3b) 10 days ago
test_feature_validation.py

41.2 kB
Deploy backend with pip-installed OpenMM 8.x, Rg/SASA/temp traces 13 days ago
test_fuzz_random.py

33 kB
Deploy backend with pip-installed OpenMM 8.x, Rg/SASA/temp traces 13 days ago
test_md_config.py

3.86 kB
feat(md): verified force field/solvent menu with alanine-dipeptide startup probe 10 days ago
test_md_sim_unit.py

16.6 kB
fix: reflect OXT across C-CA axis (not point) to avoid backbone clash that caused GBSA NaN 11 days ago
test_primers_qc.py

12.2 kB
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test_protox.py

6.34 kB
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test_scanprosite.py

4.41 kB
feat(uniprot,domains): reviewed/organism search filters + ScanProsite raw-sequence motif scan (3c,3d) 10 days ago
test_seq_tools.py

17.9 kB
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test_smoke_admet.py

5.91 kB
Deploy backend with pip-installed OpenMM 8.x, Rg/SASA/temp traces 13 days ago
test_smoke_docking.py

2.91 kB
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test_smoke_function_predict.py

2.24 kB
Deploy backend with pip-installed OpenMM 8.x, Rg/SASA/temp traces 13 days ago
test_smoke_md.py

2.72 kB
Deploy backend with pip-installed OpenMM 8.x, Rg/SASA/temp traces 13 days ago
test_uniprot_search.py

3.71 kB
feat(uniprot,domains): reviewed/organism search filters + ScanProsite raw-sequence motif scan (3c,3d) 10 days ago
test_vina_log.py

8.12 kB
Upload folder using huggingface_hub 8 days ago