requirements.txt

aiohttp==3.9.5
aiosignal==1.3.1
bio==1.7.1
biopython==1.83
biothings-client==0.3.1
dataclasses-json==0.6.6
Deprecated==1.2.14
dirtyjson==1.0.8
diskcache==5.6.3
distro==1.9.0
frozenlist==1.4.1
gprofiler-official==1.0.0
greenlet==3.0.3
hpack==4.0.0
jsonpatch==1.33
langchain==0.2.2
langchain-community==0.2.4
langchain-core==0.2.4
langchain-experimental==0.0.60
langchain-openai==0.1.8
langchain-text-splitters==0.2.1
langsmith==0.1.71
llama-index==0.10.43
llama-index-agent-openai==0.2.7
llama-index-cli==0.1.12
llama-index-core==0.10.43
llama-index-embeddings-openai==0.1.10
llama-index-indices-managed-llama-cloud==0.1.6
llama-index-legacy==0.9.48
llama-index-llms-groq==0.1.4
llama-index-llms-llama-cpp==0.1.3
llama-index-llms-openai==0.1.22
llama-index-llms-openai-like==0.1.3
llama-index-llms-replicate==0.1.3
llama-index-multi-modal-llms-openai==0.1.6
llama-index-program-openai==0.1.6
llama-index-question-gen-openai==0.1.3
llama-index-readers-file==0.1.23
llama-index-readers-llama-parse==0.1.4
llama-parse==0.4.4
llama_cpp_python==0.2.77
llamaindex-py-client==0.1.19
marshmallow==3.21.2
multidict==6.0.5
munkres==1.1.4
mygene==3.2.2
mypy-extensions==1.0.0
natsort==8.4.0
networkx==3.3
nltk
openai
packaging==23.2
pooch==1.8.1
pypdf==4.2.0
pytrials==1.0.0
regex==2024.5.15
replicate==0.26.0
safetensors
setuptools==70.0.0
SQLAlchemy==2.0.30
striprtf==0.0.26
tenacity==8.3.0
tiktoken==0.7.0
tokenizers==0.19.1
transformers==4.41.2
typer==0.12.3
typer-slim==0.12.3
typing-inspect==0.9.0
wheel==0.43.0
wikipedia==1.4.0
wrapt==1.16.0
yarl==1.9.4