Closest Fossils: clarify vetted fossil subset includes Florissant and other sites

Reword thumbnail browser: additional images not part of vetted dataset

Copy tweaks: clarify RISE, explanation method, closest-family and distribution disclaimers, and citation text

Closest neighbors: start at 5 and allow 'Add K more neighbors' with dynamic K and tables

Explanations: label heatmaps 1–5 and guard against index mismatch

Fossil links: map old prj_fossil_unknown pages to new FossilLeafLens pages/ pattern

Update citation block with Fossil Leaf Lens reference and BibTeX

Explanations: align families with classifier top-5; accept target_labels from UI

Closest tables: serve images via GCS URLs (works on Spaces)

Closest: cosine similarity; ensure 2 from top-predicted class; take top class by confidence; normalize family match

Track 2024 embeddings in dataset/ (extant + fossils .npy and paths); update .gitignore

App: launch only when __main__; 2024 embeddings (extant/fossils), Euclidean NN, include predicted family in top 5; recompute script

UI: clean thumbnail labels, show specimen ID, update article/disclaimer copy

Explanations: letterbox preprocessing, heatmap on preprocessed image, alpha slider, mask padding

Add context statement and Specimen Workbench link/auto-switch

Fix model loading: BEiT support, token fallback (HF_TOKEN), condition bug

Fix keras_cv_attention_models pin for Spaces

Pin requirements to avoid pip resolution-too-deep

Pin Python version and tighten deps for Spaces

Fix PCA dimension error: handle 3D embedding arrays by reshaping to 2D

Refine Florissant Leaf Inspector UI and data sources

Update requirements.txt

Update README.md

Use Gradio 4.19.0 compatible with huggingface_hub 0.16.4

adding fossils

Pin exact versions of gradio and huggingface_hub to fix HfFolder import error

Use huggingface_hub 0.19.4 which still has HfFolder for Gradio compatibility

Pin exact versions of gradio and huggingface_hub to fix HfFolder import error

Update requirements: use newer gradio version that doesn't require HfFolder

Fix requirements.txt: pin compatible versions of gradio and huggingface_hub

Update closest images display: convert gallery to table format with full specimen names

update button style

update button style

debugging: xai output distortion

debugging: xai output distortion

debugging: xai output distortion

debugging: xai output distortion

debugging xai output distortion

remove code and paper link in app header

Merge branch 'main' of hf.co:spaces/Serrelab/fossil_app into main

update closest samples code

Delete embedding_fossils_142_finer.npy

update embeddings from resnet model

use corresponding embeddings for each model

update closest_sample to use new embeddings

update PCA

remove BEiT option

increase brightness of image shown

increase brightness of image shown

update user guide font size