Update app.py
Browse files
app.py
CHANGED
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@@ -3,33 +3,25 @@ import tifffile
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import numpy as np
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from cellpose import models
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from huggingface_hub import snapshot_download
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app = FastAPI()
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# --------------------------------------------------
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# Download full model repo (directory-based model)
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# --------------------------------------------------
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MODEL_REPO = "Shalani08/cellpose_3.1.1_finetuned"
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repo_dir = snapshot_download(
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repo_id=MODEL_REPO,
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repo_type="model"
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)
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# Path to Cellpose model directory
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model_dir = f"{repo_dir}/ddq_model"
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# --------------------------------------------------
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# Load Cellpose model (CPU)
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# --------------------------------------------------
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model = models.CellposeModel(
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pretrained_model=model_dir,
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gpu=False
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)
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# --------------------------------------------------
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# API endpoint
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# --------------------------------------------------
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@app.post("/segment")
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async def segment(
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image: UploadFile = File(...),
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@@ -37,7 +29,7 @@ async def segment(
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):
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img = tifffile.imread(image.file)
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masks,
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img,
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diameter=diameter,
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channels=[0, 0]
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import numpy as np
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from cellpose import models
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from huggingface_hub import snapshot_download
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import os
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app = FastAPI()
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MODEL_REPO = "Shalani08/cellpose_3.1.1_finetuned"
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repo_dir = snapshot_download(
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repo_id=MODEL_REPO,
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repo_type="model",
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token=os.environ.get("HF_TOKEN")
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)
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model_dir = f"{repo_dir}/ddq_model"
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model = models.CellposeModel(
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pretrained_model=model_dir,
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gpu=False
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)
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@app.post("/segment")
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async def segment(
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image: UploadFile = File(...),
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):
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img = tifffile.imread(image.file)
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masks, _, _ = model.eval(
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img,
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diameter=diameter,
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channels=[0, 0]
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