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Space 2.1.0: list every whole-scan field by scroll (public Scrolls main 4966bc6, PR #289)

4f465d3 verified 5 days ago

18.1 kB

<section class="scc" id="connect" aria-label="Connect your tool"><style>.scc{--a:var(--scc-accent,#4ea8de);color:inherit;font:inherit;line-height:1.5;max-width:60rem}
.scc h2{font-size:1.15em;margin:.2em 0 .3em}.scc h3{font-size:1em;margin:0 0 .2em}
.scc p{margin:.3em 0}.scc a{color:var(--a)}
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.scc .scc-meta{font-size:.85em;opacity:.8}
.scc details{border-top:1px solid color-mix(in srgb,currentColor 12%,transparent);padding:.35em 0}
.scc summary{cursor:pointer;font-weight:600;list-style-position:inside}
.scc .scc-b{font-weight:400;font-size:.75em;padding:.05em .5em;border-radius:99px;margin-left:.5em;border:1px solid currentColor;opacity:.75;white-space:nowrap}
.scc .scc-b.ok{color:#3fb37f}.scc .scc-b.src{color:var(--a)}.scc .scc-b.warn{color:#e0a030}
.scc .scc-code{position:relative;margin:.4em 0 .2em}
.scc pre{margin:0;padding:.7em .8em;border-radius:8px;overflow:auto;font-size:.82em;background:color-mix(in srgb,currentColor 9%,transparent);white-space:pre}
.scc code{font-family:ui-monospace,SFMono-Regular,Menlo,Consolas,monospace}
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.scc button.scc-copy:hover{border-color:var(--a)}
.scc .scc-url{position:relative}.scc .scc-url pre{padding-right:4.5em;white-space:pre-wrap;word-break:break-all}
.scc .scc-go{display:inline-block;margin:.3em 0;padding:.25em .8em;border-radius:6px;border:1px solid var(--a);text-decoration:none}
.scc footer{font-size:.8em;opacity:.75;margin-top:.6em}</style>
<h2>Connect your tool</h2>
<p>The ten whole-scan fields in the public bucket read straight by URL, logged out, with no download step; villa&#x27;s fields in the open data stream the same way from the run folders the Every field tab lists, and the other datasets download whole. The scans they came from are open data. The page is also an API and an MCP server that lists every field and makes a field for any box of any public scan.</p>
<div class="scc-src" id="connect-field"><h3>A whole-scan field: PHerc0175A cos, level 1 (every 2nd scan voxel)</h3>
<p class="scc-meta">CC BY-NC 4.0 (derived from Vesuvius Challenge open data) · Model output (villa lasagna at db3dbea2, scrollprize/lasagna at de45f011). grad_mag, nx and ny sit beside it, from level 2; PHerc0175A.lasagna.json in the same folder is villa&#x27;s manifest. The other nine bucket scans: replace the scan and run folder as listed on the Every field tab.</p>
<div class="scc-url"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr</code></pre></div>
<details><summary>Python (zarr)<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install &quot;zarr&gt;=3&quot; fsspec aiohttp
import zarr

root = zarr.open_group(&quot;https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr&quot;, mode=&quot;r&quot;)  # OME-Zarr, zarr v2
a = root[&quot;1&quot;]  # level 0 is full resolution; level L is 2**L times coarser
print(a.shape, a.dtype, a.chunks)
block = a[3186:3250, 2900:2964, 2200:2264]  # (z, y, x); reads only the chunks it touches</code></pre></div></details>
<details><summary>villa&#x27;s vesuvius package<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install &quot;vesuvius[volume-only]&quot;
from vesuvius import Volume

v = Volume(type=&quot;zarr&quot;, path=&quot;https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr/1&quot;)  # one pyramid level
block = v[3186:3250, 2900:2964, 2200:2264]</code></pre></div></details>
<details><summary>VC3D<span class="scc-b src">from villa&#x27;s source</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>In VC3D (villa&#x27;s volume-cartographer), open or create a project, then
File &gt; Attach Remote Zarr... and paste:

https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr

It accepts http, https and s3 OME-Zarr roots.</code></pre></div></details>
<details><summary>neuroglancer<span class="scc-b ok">tested 2026-10-24</span></summary>
<a class="scc-go" href="https://neuroglancer-demo.appspot.com/#!%7B%22layers%22%3A%5B%7B%22type%22%3A%22image%22%2C%22source%22%3A%22zarr%3A%2F%2Fhttps%3A%2F%2Fhuggingface.co%2Fbuckets%2FSharpMeow%2Flasagna-fields%2Fresolve%2FPHerc0175A%2Frepresentations%2Fpredictions%2Flasagna%2F20250521115057-lasagna-de45f011%2FPHerc0175A_cos.ome.zarr%2F%22%2C%22name%22%3A%22A%20whole-scan%20field%3A%20PHerc0175A%20cos%2C%20level%201%20%28every%202nd%20scan%20voxel%29%22%7D%5D%2C%22layout%22%3A%224panel%22%7D" target="_blank" rel="noopener">Open in neuroglancer</a>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>https://neuroglancer-demo.appspot.com/#!%7B%22layers%22%3A%5B%7B%22type%22%3A%22image%22%2C%22source%22%3A%22zarr%3A%2F%2Fhttps%3A%2F%2Fhuggingface.co%2Fbuckets%2FSharpMeow%2Flasagna-fields%2Fresolve%2FPHerc0175A%2Frepresentations%2Fpredictions%2Flasagna%2F20250521115057-lasagna-de45f011%2FPHerc0175A_cos.ome.zarr%2F%22%2C%22name%22%3A%22A%20whole-scan%20field%3A%20PHerc0175A%20cos%2C%20level%201%20%28every%202nd%20scan%20voxel%29%22%7D%5D%2C%22layout%22%3A%224panel%22%7D</code></pre></div></details>
<details><summary>curl<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>curl -s https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr/.zattrs            # OME multiscales metadata
curl -s https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr/1/.zarray     # one level: shape, chunks, dtype, codec</code></pre></div></details>
</div>
<div class="scc-src" id="connect-ct"><h3>X-ray CT that field came from, PHerc0175A 8.640 um</h3>
<p class="scc-meta">CC BY-NC 4.0 (Vesuvius Challenge open data) · Read live from the open-data bucket, never copied here. The field&#x27;s level 1 is the scan&#x27;s level 1 grid. · <a href="https://scrollprize.org/data_browser/PHerc0175A" target="_blank" rel="noopener">browse</a></p>
<div class="scc-url"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr</code></pre></div>
<details><summary>Python (zarr)<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install &quot;zarr&gt;=3&quot; fsspec aiohttp
import zarr

root = zarr.open_group(&quot;https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr&quot;, mode=&quot;r&quot;)  # OME-Zarr, zarr v2
a = root[&quot;2&quot;]  # level 0 is full resolution; level L is 2**L times coarser
print(a.shape, a.dtype, a.chunks)
block = a[1593:1657, 1170:1234, 1170:1234]  # (z, y, x); reads only the chunks it touches</code></pre></div></details>
<details><summary>villa&#x27;s vesuvius package<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install &quot;vesuvius[volume-only]&quot;
from vesuvius import Volume

v = Volume(type=&quot;zarr&quot;, path=&quot;https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr/2&quot;)  # one pyramid level
block = v[1593:1657, 1170:1234, 1170:1234]</code></pre></div></details>
<details><summary>VC3D<span class="scc-b src">from villa&#x27;s source</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>In VC3D (villa&#x27;s volume-cartographer), open or create a project, then
File &gt; Attach Remote Zarr... and paste:

https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr

It accepts http, https and s3 OME-Zarr roots.</code></pre></div></details>
<details><summary>neuroglancer<span class="scc-b ok">tested 2026-10-24</span></summary>
<a class="scc-go" href="https://neuroglancer-demo.appspot.com/#!%7B%22layers%22%3A%5B%7B%22type%22%3A%22image%22%2C%22source%22%3A%22zarr%3A%2F%2Fhttps%3A%2F%2Fvesuvius-challenge-open-data.s3.us-east-1.amazonaws.com%2FPHerc0175A%2Fvolumes%2F20250521115057-8.640um-1.2m-116keV-masked.zarr%2F%22%2C%22name%22%3A%22X-ray%20CT%20that%20field%20came%20from%2C%20PHerc0175A%208.640%20um%22%7D%5D%2C%22layout%22%3A%224panel%22%7D" target="_blank" rel="noopener">Open in neuroglancer</a>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>https://neuroglancer-demo.appspot.com/#!%7B%22layers%22%3A%5B%7B%22type%22%3A%22image%22%2C%22source%22%3A%22zarr%3A%2F%2Fhttps%3A%2F%2Fvesuvius-challenge-open-data.s3.us-east-1.amazonaws.com%2FPHerc0175A%2Fvolumes%2F20250521115057-8.640um-1.2m-116keV-masked.zarr%2F%22%2C%22name%22%3A%22X-ray%20CT%20that%20field%20came%20from%2C%20PHerc0175A%208.640%20um%22%7D%5D%2C%22layout%22%3A%224panel%22%7D</code></pre></div></details>
<details><summary>curl<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>curl -s https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr/.zattrs            # OME multiscales metadata
curl -s https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr/2/.zarray     # one level: shape, chunks, dtype, codec</code></pre></div></details>
</div>
<div class="scc-src" id="connect-api"><h3>Make a field for any box, from code or an agent</h3>
<p class="scc-meta">Code Apache 2.0; villa lasagna and its checkpoint MIT; scans and fields CC BY-NC 4.0 · make_field (same arguments as plan_field) runs villa&#x27;s lasagna on ZeroGPU and uses the caller&#x27;s ZeroGPU time, so pass a Hugging Face token. Model output, not a reading.</p>
<div class="scc-url"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>https://huggingface.co/spaces/SharpMeow/lasagna-fields</code></pre></div>
<details><summary>Python /list_models<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install gradio_client
from gradio_client import Client

client = Client(&quot;SharpMeow/lasagna-fields&quot;)
result = client.predict(api_name=&quot;/list_models&quot;)</code></pre></div></details>
<details><summary>Python /example_points<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install gradio_client
from gradio_client import Client

client = Client(&quot;SharpMeow/lasagna-fields&quot;)
result = client.predict(api_name=&quot;/example_points&quot;)</code></pre></div></details>
<details><summary>Python /plan_field<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install gradio_client
from gradio_client import Client

client = Client(&quot;SharpMeow/lasagna-fields&quot;)
result = client.predict(volume=&quot;20260930100252&quot;, z=39424, y=10752, x=13824, size=256, model=&quot;lasagna&quot;, api_name=&quot;/plan_field&quot;)</code></pre></div></details>
<details><summary>curl /list_models<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>URL=https://sharpmeow-lasagna-fields.hf.space
EVENT=$(curl -s -X POST $URL/gradio_api/call/list_models -H &#x27;Content-Type: application/json&#x27; \
  -d &#x27;{&quot;data&quot;: []}&#x27; | python3 -c &#x27;import json,sys; print(json.load(sys.stdin)[&quot;event_id&quot;])&#x27;)
curl -sN $URL/gradio_api/call/list_models/$EVENT</code></pre></div></details>
<details><summary>MCP (Claude, Cursor and other agents)<span class="scc-b ok">tested 2026-10-24</span></summary>
<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>{
  &quot;mcpServers&quot;: {
    &quot;lasagna-fields&quot;: {
      &quot;url&quot;: &quot;https://sharpmeow-lasagna-fields.hf.space/gradio_api/mcp/sse&quot;
    }
  }
}

Tool list: https://sharpmeow-lasagna-fields.hf.space/gradio_api/mcp/schema</code></pre></div></details>
</div>
<footer>Machine-readable: <a href="https://huggingface.co/spaces/SharpMeow/lasagna-fields/blob/main/connect.json" target="_blank" rel="noopener">connect.json</a> and <a href="https://huggingface.co/spaces/SharpMeow/lasagna-fields/blob/main/CONNECT.md" target="_blank" rel="noopener">CONNECT.md</a>. Checked 2026-10-25. "Tested" means the snippet ran against this public data on that date. Scan data keeps its own license (the Vesuvius Challenge open data is CC BY-NC 4.0).</footer></section>

	<section class="scc" id="connect" aria-label="Connect your tool"><style>.scc{--a:var(--scc-accent,#4ea8de);color:inherit;font:inherit;line-height:1.5;max-width:60rem}
	.scc h2{font-size:1.15em;margin:.2em 0 .3em}.scc h3{font-size:1em;margin:0 0 .2em}
	.scc p{margin:.3em 0}.scc a{color:var(--a)}
	.scc .scc-src{border:1px solid color-mix(in srgb,currentColor 18%,transparent);border-radius:10px;padding:.7em .9em;margin:.7em 0;background:color-mix(in srgb,currentColor 4%,transparent)}
	.scc .scc-meta{font-size:.85em;opacity:.8}
	.scc details{border-top:1px solid color-mix(in srgb,currentColor 12%,transparent);padding:.35em 0}
	.scc summary{cursor:pointer;font-weight:600;list-style-position:inside}
	.scc .scc-b{font-weight:400;font-size:.75em;padding:.05em .5em;border-radius:99px;margin-left:.5em;border:1px solid currentColor;opacity:.75;white-space:nowrap}
	.scc .scc-b.ok{color:#3fb37f}.scc .scc-b.src{color:var(--a)}.scc .scc-b.warn{color:#e0a030}
	.scc .scc-code{position:relative;margin:.4em 0 .2em}
	.scc pre{margin:0;padding:.7em .8em;border-radius:8px;overflow:auto;font-size:.82em;background:color-mix(in srgb,currentColor 9%,transparent);white-space:pre}
	.scc code{font-family:ui-monospace,SFMono-Regular,Menlo,Consolas,monospace}
	.scc button.scc-copy{all:unset;box-sizing:border-box;position:absolute;top:.35em;right:.35em;font-size:.75em;line-height:1.4;padding:.1em .6em;border-radius:6px;border:1px solid color-mix(in srgb,currentColor 30%,transparent);background:color-mix(in srgb,currentColor 8%,transparent);color:inherit;cursor:pointer}
	.scc button.scc-copy:hover{border-color:var(--a)}
	.scc .scc-url{position:relative}.scc .scc-url pre{padding-right:4.5em;white-space:pre-wrap;word-break:break-all}
	.scc .scc-go{display:inline-block;margin:.3em 0;padding:.25em .8em;border-radius:6px;border:1px solid var(--a);text-decoration:none}
	.scc footer{font-size:.8em;opacity:.75;margin-top:.6em}</style>
	<h2>Connect your tool</h2>
	<p>The ten whole-scan fields in the public bucket read straight by URL, logged out, with no download step; villa's fields in the open data stream the same way from the run folders the Every field tab lists, and the other datasets download whole. The scans they came from are open data. The page is also an API and an MCP server that lists every field and makes a field for any box of any public scan.</p>
	<div class="scc-src" id="connect-field"><h3>A whole-scan field: PHerc0175A cos, level 1 (every 2nd scan voxel)</h3>
	<p class="scc-meta">CC BY-NC 4.0 (derived from Vesuvius Challenge open data) · Model output (villa lasagna at db3dbea2, scrollprize/lasagna at de45f011). grad_mag, nx and ny sit beside it, from level 2; PHerc0175A.lasagna.json in the same folder is villa's manifest. The other nine bucket scans: replace the scan and run folder as listed on the Every field tab.</p>
	<div class="scc-url"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr</code></pre></div>
	<details><summary>Python (zarr)<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install "zarr>=3" fsspec aiohttp
	import zarr

	root = zarr.open_group("https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr", mode="r") # OME-Zarr, zarr v2
	a = root["1"] # level 0 is full resolution; level L is 2**L times coarser
	print(a.shape, a.dtype, a.chunks)
	block = a[3186:3250, 2900:2964, 2200:2264] # (z, y, x); reads only the chunks it touches</code></pre></div></details>
	<details><summary>villa's vesuvius package<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install "vesuvius[volume-only]"
	from vesuvius import Volume

	v = Volume(type="zarr", path="https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr/1") # one pyramid level
	block = v[3186:3250, 2900:2964, 2200:2264]</code></pre></div></details>
	<details><summary>VC3D<span class="scc-b src">from villa's source</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>In VC3D (villa's volume-cartographer), open or create a project, then
	File > Attach Remote Zarr... and paste:

	https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr

	It accepts http, https and s3 OME-Zarr roots.</code></pre></div></details>
	<details><summary>neuroglancer<span class="scc-b ok">tested 2026-10-24</span></summary>
	<a class="scc-go" href="https://neuroglancer-demo.appspot.com/#!%7B%22layers%22%3A%5B%7B%22type%22%3A%22image%22%2C%22source%22%3A%22zarr%3A%2F%2Fhttps%3A%2F%2Fhuggingface.co%2Fbuckets%2FSharpMeow%2Flasagna-fields%2Fresolve%2FPHerc0175A%2Frepresentations%2Fpredictions%2Flasagna%2F20250521115057-lasagna-de45f011%2FPHerc0175A_cos.ome.zarr%2F%22%2C%22name%22%3A%22A%20whole-scan%20field%3A%20PHerc0175A%20cos%2C%20level%201%20%28every%202nd%20scan%20voxel%29%22%7D%5D%2C%22layout%22%3A%224panel%22%7D" target="_blank" rel="noopener">Open in neuroglancer</a>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>https://neuroglancer-demo.appspot.com/#!%7B%22layers%22%3A%5B%7B%22type%22%3A%22image%22%2C%22source%22%3A%22zarr%3A%2F%2Fhttps%3A%2F%2Fhuggingface.co%2Fbuckets%2FSharpMeow%2Flasagna-fields%2Fresolve%2FPHerc0175A%2Frepresentations%2Fpredictions%2Flasagna%2F20250521115057-lasagna-de45f011%2FPHerc0175A_cos.ome.zarr%2F%22%2C%22name%22%3A%22A%20whole-scan%20field%3A%20PHerc0175A%20cos%2C%20level%201%20%28every%202nd%20scan%20voxel%29%22%7D%5D%2C%22layout%22%3A%224panel%22%7D</code></pre></div></details>
	<details><summary>curl<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>curl -s https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr/.zattrs # OME multiscales metadata
	curl -s https://huggingface.co/buckets/SharpMeow/lasagna-fields/resolve/PHerc0175A/representations/predictions/lasagna/20250521115057-lasagna-de45f011/PHerc0175A_cos.ome.zarr/1/.zarray # one level: shape, chunks, dtype, codec</code></pre></div></details>
	</div>
	<div class="scc-src" id="connect-ct"><h3>X-ray CT that field came from, PHerc0175A 8.640 um</h3>
	<p class="scc-meta">CC BY-NC 4.0 (Vesuvius Challenge open data) · Read live from the open-data bucket, never copied here. The field's level 1 is the scan's level 1 grid. · <a href="https://scrollprize.org/data_browser/PHerc0175A" target="_blank" rel="noopener">browse</a></p>
	<div class="scc-url"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr</code></pre></div>
	<details><summary>Python (zarr)<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install "zarr>=3" fsspec aiohttp
	import zarr

	root = zarr.open_group("https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr", mode="r") # OME-Zarr, zarr v2
	a = root["2"] # level 0 is full resolution; level L is 2**L times coarser
	print(a.shape, a.dtype, a.chunks)
	block = a[1593:1657, 1170:1234, 1170:1234] # (z, y, x); reads only the chunks it touches</code></pre></div></details>
	<details><summary>villa's vesuvius package<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install "vesuvius[volume-only]"
	from vesuvius import Volume

	v = Volume(type="zarr", path="https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr/2") # one pyramid level
	block = v[1593:1657, 1170:1234, 1170:1234]</code></pre></div></details>
	<details><summary>VC3D<span class="scc-b src">from villa's source</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>In VC3D (villa's volume-cartographer), open or create a project, then
	File > Attach Remote Zarr... and paste:

	https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr

	It accepts http, https and s3 OME-Zarr roots.</code></pre></div></details>
	<details><summary>neuroglancer<span class="scc-b ok">tested 2026-10-24</span></summary>
	<a class="scc-go" href="https://neuroglancer-demo.appspot.com/#!%7B%22layers%22%3A%5B%7B%22type%22%3A%22image%22%2C%22source%22%3A%22zarr%3A%2F%2Fhttps%3A%2F%2Fvesuvius-challenge-open-data.s3.us-east-1.amazonaws.com%2FPHerc0175A%2Fvolumes%2F20250521115057-8.640um-1.2m-116keV-masked.zarr%2F%22%2C%22name%22%3A%22X-ray%20CT%20that%20field%20came%20from%2C%20PHerc0175A%208.640%20um%22%7D%5D%2C%22layout%22%3A%224panel%22%7D" target="_blank" rel="noopener">Open in neuroglancer</a>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>https://neuroglancer-demo.appspot.com/#!%7B%22layers%22%3A%5B%7B%22type%22%3A%22image%22%2C%22source%22%3A%22zarr%3A%2F%2Fhttps%3A%2F%2Fvesuvius-challenge-open-data.s3.us-east-1.amazonaws.com%2FPHerc0175A%2Fvolumes%2F20250521115057-8.640um-1.2m-116keV-masked.zarr%2F%22%2C%22name%22%3A%22X-ray%20CT%20that%20field%20came%20from%2C%20PHerc0175A%208.640%20um%22%7D%5D%2C%22layout%22%3A%224panel%22%7D</code></pre></div></details>
	<details><summary>curl<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>curl -s https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr/.zattrs # OME multiscales metadata
	curl -s https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0175A/volumes/20250521115057-8.640um-1.2m-116keV-masked.zarr/2/.zarray # one level: shape, chunks, dtype, codec</code></pre></div></details>
	</div>
	<div class="scc-src" id="connect-api"><h3>Make a field for any box, from code or an agent</h3>
	<p class="scc-meta">Code Apache 2.0; villa lasagna and its checkpoint MIT; scans and fields CC BY-NC 4.0 · make_field (same arguments as plan_field) runs villa's lasagna on ZeroGPU and uses the caller's ZeroGPU time, so pass a Hugging Face token. Model output, not a reading.</p>
	<div class="scc-url"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>https://huggingface.co/spaces/SharpMeow/lasagna-fields</code></pre></div>
	<details><summary>Python /list_models<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install gradio_client
	from gradio_client import Client

	client = Client("SharpMeow/lasagna-fields")
	result = client.predict(api_name="/list_models")</code></pre></div></details>
	<details><summary>Python /example_points<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install gradio_client
	from gradio_client import Client

	client = Client("SharpMeow/lasagna-fields")
	result = client.predict(api_name="/example_points")</code></pre></div></details>
	<details><summary>Python /plan_field<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code># pip install gradio_client
	from gradio_client import Client

	client = Client("SharpMeow/lasagna-fields")
	result = client.predict(volume="20260930100252", z=39424, y=10752, x=13824, size=256, model="lasagna", api_name="/plan_field")</code></pre></div></details>
	<details><summary>curl /list_models<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>URL=https://sharpmeow-lasagna-fields.hf.space
	EVENT=$(curl -s -X POST $URL/gradio_api/call/list_models -H 'Content-Type: application/json' \
	-d '{"data": []}' \| python3 -c 'import json,sys; print(json.load(sys.stdin)["event_id"])')
	curl -sN $URL/gradio_api/call/list_models/$EVENT</code></pre></div></details>
	<details><summary>MCP (Claude, Cursor and other agents)<span class="scc-b ok">tested 2026-10-24</span></summary>
	<div class="scc-code"><button type="button" class="scc-copy" data-testid="connect-copy" onclick="navigator.clipboard&&navigator.clipboard.writeText(this.parentNode.querySelector('code').innerText).then(()=>{this.textContent='Copied';setTimeout(()=>this.textContent='Copy',1200)})">Copy</button><pre><code>{
	"mcpServers": {
	"lasagna-fields": {
	"url": "https://sharpmeow-lasagna-fields.hf.space/gradio_api/mcp/sse"
	}
	}
	}

	Tool list: https://sharpmeow-lasagna-fields.hf.space/gradio_api/mcp/schema</code></pre></div></details>
	</div>
	<footer>Machine-readable: <a href="https://huggingface.co/spaces/SharpMeow/lasagna-fields/blob/main/connect.json" target="_blank" rel="noopener">connect.json</a> and <a href="https://huggingface.co/spaces/SharpMeow/lasagna-fields/blob/main/CONNECT.md" target="_blank" rel="noopener">CONNECT.md</a>. Checked 2026-10-25. "Tested" means the snippet ran against this public data on that date. Scan data keeps its own license (the Vesuvius Challenge open data is CC BY-NC 4.0).</footer></section>