umbilici / connect.json
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Umbilici 1.10.0 from Scrolls main 50020b3a452eb431f739185e7e725c57f5987671, lines from center lines v2.6.1 (51603382)
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{
"schema": "space-connect/1",
"space": "SharpMeow/umbilici",
"title": "Umbilici",
"checked": "2026-10-24",
"intro": "Every center line, CT scan and lasagna field on this page reads straight from these URLs, with no account and no download step. Each scan card also has its own OME-Zarr URL and an Open in neuroglancer link.",
"sources": [
{"id": "lines", "title": "Center lines (every line, every scan)", "kind": "hf-dataset",
"url": "https://huggingface.co/datasets/SharpMeow/vesuvius-center-lines",
"repo": "SharpMeow/vesuvius-center-lines", "file": "index.json", "configs": ["lines", "points"], "table": "tables/points.jsonl",
"license": "CC BY-NC 4.0 bundle; each file keeps its own license (MIT, CC BY 4.0 or CC BY-NC 4.0, listed in index.json)",
"note": "Files under lines/ are in VC3D's umbilicus JSON format, level-0 voxels (x, y, z)."},
{"id": "ct", "title": "X-ray CT, example PHerc0125 (each scan card has its own URL)", "kind": "ome-zarr",
"url": "https://vesuvius-challenge-open-data.s3.us-east-1.amazonaws.com/PHerc0125/volumes/20250821151825-9.362um-1.2m-113keV-masked.zarr",
"zarr_format": 2, "example": {"level": "2", "start": [2600, 1000, 1000]},
"license": "CC BY-NC 4.0 (Vesuvius Challenge open data)",
"note": "Read live from the open-data bucket, never copied here. uint8, 128^3 chunks, no compressor, 6 levels.",
"browse": "https://scrollprize.org/data_browser/PHerc0125"},
{"id": "lasagna", "title": "Lasagna field, PHerc0175A", "kind": "hf-dataset",
"url": "https://huggingface.co/datasets/SharpMeow/pherc0175a-lasagna",
"repo": "SharpMeow/pherc0175a-lasagna", "file": "README.md", "size": "large",
"license": "CC BY-NC 4.0", "note": "villa lasagna predict3d output (scrollprize/lasagna); model output, not checked by eye."},
{"id": "fields", "title": "Lasagna fields, ten scans", "kind": "page-api",
"url": "https://huggingface.co/spaces/SharpMeow/lasagna-fields",
"links": [{"label": "Lasagna Fields: every field's OME-Zarr URL, VC3D manifest and tested snippets", "url": "https://huggingface.co/spaces/SharpMeow/lasagna-fields"}],
"license": "CC BY-NC 4.0",
"note": "villa lasagna predict3d output (model output) for ten scans, public and read live: each scan's cos, grad_mag, nx and ny fields as OME-Zarr plus a SCAN.lasagna.json for VC3D's Attach Remote Lasagna Manifest. That Space has its own Connect your tool section."},
{"id": "page", "title": "This page's own data and API", "kind": "page-api",
"url": "https://sharpmeow-umbilici.static.hf.space/",
"links": [{"label": "Every line, scan and CT pyramid as one JSON", "url": "https://huggingface.co/spaces/SharpMeow/umbilici/resolve/main/data/lines.json"},
{"label": "Open a scan in a given mode and height", "url": "https://sharpmeow-umbilici.static.hf.space/?mode=scan&scan=PHerc0191&z=10400"},
{"label": "Page source and build scripts", "url": "https://huggingface.co/spaces/SharpMeow/umbilici/tree/main"}],
"license": "Page code Apache 2.0; data as above",
"note": "In a browser or headless Chromium, window.umbilici has scans(), lines(scroll), at(scroll, z), csv(...) and more (Guide, For researchers)."}
]
}