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Runtime error
Commit ·
03d955f
1
Parent(s): 08ab8f4
Update app.py
Browse files
app.py
CHANGED
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@@ -1,5 +1,4 @@
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import streamlit as st
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from streamlit.session_state import SessionState
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import pickle
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import pandas as pd
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import torch
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@@ -12,6 +11,7 @@ from docx import Document
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from docx.enum.text import WD_PARAGRAPH_ALIGNMENT
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from io import BytesIO
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import re
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openai.api_key = "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"
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@@ -57,34 +57,19 @@ model = CLIPModel().to(device)
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model.load_state_dict(torch.load("weights.pt", map_location=torch.device('cpu')))
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text_embeddings = torch.load('saved_text_embeddings.pt', map_location=device)
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def handle_feedback(session_state):
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if session_state.caption_index < len(session_state.generated_captions) - 1:
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session_state.caption_index += 1
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new_caption = session_state.generated_captions[session_state.caption_index]
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return new_caption
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else:
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st.warning("No more captions available to regenerate the report.")
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return session_state.generated_captions[session_state.caption_index]
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# Initialize the session state
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if "caption_index" not in st.session_state:
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st.session_state.caption_index = 0
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if "generated_captions" not in st.session_state:
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st.session_state.generated_captions = []
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def download_link(content, filename, link_text):
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b64 = base64.b64encode(content).decode()
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href = f'<a href="data:application/octet-stream;base64,{b64}" download="{filename}">{link_text}</a>'
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return href
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def
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matches = predict_caption(
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image, model, text_embeddings, testing_df["caption"]
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)
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cleaned_matches = [re.sub(r'\s\(ROCO_\d+\)', '', match) for match in matches]
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return cleaned_matches
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def generate_radiology_report(prompt):
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response = openai.Completion.create(
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@@ -109,49 +94,31 @@ def save_as_docx(text, filename):
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output.seek(0)
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return output.getvalue()
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st.title("RadiXGPT: An Evolution
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st.subheader("Personal Information")
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first_name = st.text_input("First Name")
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last_name = st.text_input("Last Name")
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age = st.number_input("Age", min_value=0, max_value=120, value=25, step=1)
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gender = st.selectbox("Gender", ["Male", "Female", "Other"])
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if uploaded_file is not None:
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image = Image.open(uploaded_file)
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st.image(image, caption="Uploaded Image", use_column_width=True)
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st.write("")
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if st.button("Generate Caption"):
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# Feedback buttons
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st.header("Feedback")
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if st.button("Not Satisfied"):
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new_caption = handle_feedback(st.session_state)
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if new_caption:
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# Generate new radiology report
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radiology_report = generate_radiology_report(f"Write Complete Radiology Report for this with clinical info, subjective, Assessment, Finding, Impressions, Conclusion and more in proper order : {new_caption}")
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radiology_report_with_personal_info = f"Patient Name: {first_name} {last_name}\nAge: {age}\nGender: {gender}\n\n{radiology_report}"
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st.header("New Radiology Report")
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st.write(radiology_report_with_personal_info)
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st.markdown(download_link(save_as_docx(radiology_report_with_personal_info, "radiology_report.docx"), "radiology_report.docx", "Download New Report as DOCX"), unsafe_allow_html=True)
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import streamlit as st
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import pickle
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import pandas as pd
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import torch
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from docx.enum.text import WD_PARAGRAPH_ALIGNMENT
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from io import BytesIO
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import re
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from session_state import get
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openai.api_key = "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"
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model.load_state_dict(torch.load("weights.pt", map_location=torch.device('cpu')))
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text_embeddings = torch.load('saved_text_embeddings.pt', map_location=device)
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session_state = get(caption_index=0)
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def download_link(content, filename, link_text):
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b64 = base64.b64encode(content).decode()
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href = f'<a href="data:application/octet-stream;base64,{b64}" download="{filename}">{link_text}</a>'
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return href
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def show_predicted_caption_with_index(image, caption_index):
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matches = predict_caption(
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image, model, text_embeddings, testing_df["caption"]
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)
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cleaned_matches = [re.sub(r'\s\(ROCO_\d+\)', '', match) for match in matches]
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return cleaned_matches[caption_index]
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def generate_radiology_report(prompt):
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response = openai.Completion.create(
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output.seek(0)
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return output.getvalue()
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st.title("RadiXGPT: An Evolution in Radiology Reporting")
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st.write("Upload a radiology image and generate a radiology report.")
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uploaded_image = st.file_uploader("Choose an image file", type=["jpg", "jpeg", "png"])
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if uploaded_image is not None:
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image = Image.open(uploaded_image)
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st.image(image, caption="Uploaded Image", use_column_width=True)
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if st.button("Generate Caption"):
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if session_state.caption_index < 5:
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session_state.caption_index += 1
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else:
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session_state.caption_index = 0
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caption = show_predicted_caption_with_index(image, session_state.caption_index)
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st.write("Caption: ", caption)
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report_prompt = f"Generate a detailed radiology report based on this caption: {caption}"
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report = generate_radiology_report(report_prompt)
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st.write("Report: ", report)
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# Download report as a .docx file
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docx_data = save_as_docx(report, "Radiology_Report.docx")
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st.markdown(
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download_link(docx_data, "Radiology_Report.docx", "Download Report as .docx"),
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unsafe_allow_html=True,
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)
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