Spaces:
Runtime error
Runtime error
Commit
·
b0cd6ca
1
Parent(s):
391d6d2
Update app.py
Browse files
app.py
CHANGED
|
@@ -11,7 +11,6 @@ from docx import Document
|
|
| 11 |
from docx.enum.text import WD_PARAGRAPH_ALIGNMENT
|
| 12 |
from io import BytesIO
|
| 13 |
import re
|
| 14 |
-
from SessionState import get
|
| 15 |
|
| 16 |
openai.api_key = "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"
|
| 17 |
|
|
@@ -57,19 +56,17 @@ model = CLIPModel().to(device)
|
|
| 57 |
model.load_state_dict(torch.load("weights.pt", map_location=torch.device('cpu')))
|
| 58 |
text_embeddings = torch.load('saved_text_embeddings.pt', map_location=device)
|
| 59 |
|
| 60 |
-
session_state = get(caption_index=0)
|
| 61 |
-
|
| 62 |
def download_link(content, filename, link_text):
|
| 63 |
b64 = base64.b64encode(content).decode()
|
| 64 |
href = f'<a href="data:application/octet-stream;base64,{b64}" download="{filename}">{link_text}</a>'
|
| 65 |
return href
|
| 66 |
|
| 67 |
-
def
|
| 68 |
matches = predict_caption(
|
| 69 |
image, model, text_embeddings, testing_df["caption"]
|
| 70 |
-
)
|
| 71 |
-
cleaned_matches = [re.sub(r'\s\(ROCO_\d+\)', '', match) for match in matches]
|
| 72 |
-
return cleaned_matches
|
| 73 |
|
| 74 |
def generate_radiology_report(prompt):
|
| 75 |
response = openai.Completion.create(
|
|
@@ -94,31 +91,46 @@ def save_as_docx(text, filename):
|
|
| 94 |
output.seek(0)
|
| 95 |
return output.getvalue()
|
| 96 |
|
| 97 |
-
st.title("RadiXGPT: An Evolution
|
| 98 |
-
st.write("Upload a radiology image and generate a radiology report.")
|
| 99 |
|
| 100 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 101 |
|
| 102 |
-
|
| 103 |
-
|
|
|
|
|
|
|
| 104 |
st.image(image, caption="Uploaded Image", use_column_width=True)
|
|
|
|
| 105 |
|
| 106 |
if st.button("Generate Caption"):
|
| 107 |
-
|
| 108 |
-
|
| 109 |
-
|
| 110 |
-
|
| 111 |
-
|
| 112 |
-
|
| 113 |
-
|
| 114 |
-
|
| 115 |
-
|
| 116 |
-
|
| 117 |
-
|
| 118 |
-
|
| 119 |
-
|
| 120 |
-
|
| 121 |
-
|
| 122 |
-
|
| 123 |
-
|
| 124 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 11 |
from docx.enum.text import WD_PARAGRAPH_ALIGNMENT
|
| 12 |
from io import BytesIO
|
| 13 |
import re
|
|
|
|
| 14 |
|
| 15 |
openai.api_key = "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"
|
| 16 |
|
|
|
|
| 56 |
model.load_state_dict(torch.load("weights.pt", map_location=torch.device('cpu')))
|
| 57 |
text_embeddings = torch.load('saved_text_embeddings.pt', map_location=device)
|
| 58 |
|
|
|
|
|
|
|
| 59 |
def download_link(content, filename, link_text):
|
| 60 |
b64 = base64.b64encode(content).decode()
|
| 61 |
href = f'<a href="data:application/octet-stream;base64,{b64}" download="{filename}">{link_text}</a>'
|
| 62 |
return href
|
| 63 |
|
| 64 |
+
def show_predicted_caption(image, top_k=8):
|
| 65 |
matches = predict_caption(
|
| 66 |
image, model, text_embeddings, testing_df["caption"]
|
| 67 |
+
)[:top_k]
|
| 68 |
+
cleaned_matches = [re.sub(r'\s\(ROCO_\d+\)', '', match) for match in matches] # Add this line to clean the matches
|
| 69 |
+
return cleaned_matches # Return the cleaned_matches instead of matches
|
| 70 |
|
| 71 |
def generate_radiology_report(prompt):
|
| 72 |
response = openai.Completion.create(
|
|
|
|
| 91 |
output.seek(0)
|
| 92 |
return output.getvalue()
|
| 93 |
|
| 94 |
+
st.title("RadiXGPT: An Evolution of machine doctors towards Radiology")
|
|
|
|
| 95 |
|
| 96 |
+
# Collect user's personal information
|
| 97 |
+
st.subheader("Personal Information")
|
| 98 |
+
first_name = st.text_input("First Name")
|
| 99 |
+
last_name = st.text_input("Last Name")
|
| 100 |
+
age = st.number_input("Age", min_value=0, max_value=120, value=25, step=1)
|
| 101 |
+
gender = st.selectbox("Gender", ["Male", "Female", "Other"])
|
| 102 |
|
| 103 |
+
st.write("Upload Scan to get Radiological Report:")
|
| 104 |
+
uploaded_file = st.file_uploader("Choose an image...", type=["jpg", "png", "jpeg"])
|
| 105 |
+
if uploaded_file is not None:
|
| 106 |
+
image = Image.open(uploaded_file)
|
| 107 |
st.image(image, caption="Uploaded Image", use_column_width=True)
|
| 108 |
+
st.write("")
|
| 109 |
|
| 110 |
if st.button("Generate Caption"):
|
| 111 |
+
with st.spinner("Generating caption..."):
|
| 112 |
+
image_np = np.array(image)
|
| 113 |
+
caption = show_predicted_caption(image_np)[0]
|
| 114 |
+
|
| 115 |
+
st.success(f"Caption: {caption}")
|
| 116 |
+
|
| 117 |
+
# Generate the radiology report
|
| 118 |
+
radiology_report = generate_radiology_report(f"Write Complete Radiology Report for this with clinical info, subjective, Assessment, Finding, Impressions, Conclusion and more in proper order : {caption}")
|
| 119 |
+
|
| 120 |
+
# Add personal information to the radiology report
|
| 121 |
+
radiology_report_with_personal_info = f"Patient Name: {first_name} {last_name}\nAge: {age}\nGender: {gender}\n\n{radiology_report}"
|
| 122 |
+
|
| 123 |
+
st.header("Radiology Report")
|
| 124 |
+
st.write(radiology_report_with_personal_info)
|
| 125 |
+
st.markdown(download_link(save_as_docx(radiology_report_with_personal_info, "radiology_report.docx"), "radiology_report.docx", "Download Report as DOCX"), unsafe_allow_html=True)
|
| 126 |
+
|
| 127 |
+
# Feedback buttons
|
| 128 |
+
st.header("Thanks for your feedback!")
|
| 129 |
+
feedback_options = ["Better", "Satisfied", "Worse"]
|
| 130 |
+
selected_feedback = st.radio("Please provide feedback on the generated report:", feedback_options)
|
| 131 |
+
|
| 132 |
+
if st.button("Submit Feedback"):
|
| 133 |
+
st.success("Thanks for providing feedback!")
|
| 134 |
+
# Implement your feedback handling logic here based on the `selected_feedback` value
|
| 135 |
+
|
| 136 |
+
Tell me how to solve this problem like
|