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3D scene data and HTML generator for vine, tracker, sun and photosynthesis.
Builds JSON-serializable scene data from ShadowModel + CanopyPhotosynthesisModel,
and renders an interactive Three.js scene showing which parts of the vine
are doing how much photosynthesis (A per zone, colored by rate).
"""
from __future__ import annotations
import json
from datetime import date
from typing import Any
import numpy as np
import pandas as pd
def build_scene_data(
hour: int = 12,
date_str: str | None = None,
par: float = 1800.0,
tleaf: float = 32.0,
co2: float = 400.0,
vpd: float = 2.5,
tair: float = 33.0,
) -> dict[str, Any]:
"""
Build scene data for the 3D visualization: sun, tracker, vine geometry,
shadow mask, PAR and A per zone.
Returns a dict suitable for JSON serialization and for build_scene_html().
"""
from src.canopy_photosynthesis import CanopyPhotosynthesisModel
from src.solar_geometry import ShadowModel
shadow = ShadowModel()
canopy = CanopyPhotosynthesisModel(shadow_model=shadow)
dt_str = date_str or str(date.today())
try:
dt = pd.Timestamp(f"{dt_str} {hour:02d}:00:00", tz="Asia/Jerusalem")
except Exception:
dt = pd.Timestamp(f"{date.today()} {hour:02d}:00:00", tz="Asia/Jerusalem")
solar_pos = shadow.get_solar_position(pd.DatetimeIndex([dt]))
elev = float(solar_pos["solar_elevation"].iloc[0])
azim = float(solar_pos["solar_azimuth"].iloc[0])
# Sun direction (world: x=East, y=North, z=up), unit vector toward sun
elev_rad = np.radians(elev)
azim_rad = np.radians(azim)
sun_x = np.cos(elev_rad) * np.sin(azim_rad)
sun_y = np.cos(elev_rad) * np.cos(azim_rad)
sun_z = np.sin(elev_rad)
sun_dir = [float(sun_x), float(sun_y), float(sun_z)]
if elev <= 2.0:
# Night: still return geometry, zero A
tracker_theta = 0.0
shadow_mask = np.ones((shadow.n_vertical, shadow.n_horizontal), dtype=bool)
par_zones = np.full((shadow.n_vertical, shadow.n_horizontal), par * 0.15)
A_zones = np.zeros((shadow.n_vertical, shadow.n_horizontal))
A_vine = 0.0
sunlit_fraction = 0.0
else:
tracker = shadow.compute_tracker_tilt(azim, elev)
tracker_theta = float(tracker["tracker_theta"])
shadow_mask = shadow.project_shadow(elev, azim, tracker_theta)
vine_result = canopy.compute_vine_A(
par=par, Tleaf=tleaf, CO2=co2, VPD=vpd, Tair=tair,
shadow_mask=shadow_mask, solar_elevation=elev,
solar_azimuth=azim, tracker_tilt=tracker_theta,
)
par_zones = vine_result["par_zones"]
A_zones = vine_result["A_zones"]
A_vine = float(vine_result["A_vine"])
sunlit_fraction = float(vine_result["sunlit_fraction"])
# Panel and vine box in world coords (x=East, y=North, z=up)
panel_corners = shadow.panel_corners_world(tracker_theta, row_offset=0.0)
vine_box = shadow.vine_box_world(row_offset=0.0)
# Grid for zone centres (for positioning vine cells in 3D)
grid_v = shadow._grid_v.tolist()
grid_z = shadow._grid_z.tolist()
def to_list(a: np.ndarray) -> list:
if a.dtype == bool:
return [[bool(x) for x in row] for row in a.tolist()]
return [[float(x) for x in row] for row in a.tolist()]
return {
"hour": hour,
"date": dt_str,
"sun_elevation": round(elev, 2),
"sun_azimuth": round(azim, 2),
"sun_direction": sun_dir,
"tracker_theta": round(tracker_theta, 2),
"panel_corners": panel_corners.tolist(),
"vine_box": vine_box.tolist(),
"n_vertical": shadow.n_vertical,
"n_horizontal": shadow.n_horizontal,
"grid_v": grid_v,
"grid_z": grid_z,
"canopy_width": shadow.canopy_width,
"canopy_height": shadow.canopy_height,
"shadow_mask": to_list(shadow_mask),
"par_zones": to_list(par_zones),
"A_zones": to_list(A_zones),
"A_vine": round(A_vine, 3),
"sunlit_fraction": round(sunlit_fraction, 3),
}
def build_scene_html(scene_data: dict[str, Any], height_px: int = 480) -> str:
"""
Generate a self-contained HTML file with a Three.js scene: sun, tracker panel,
vine canopy grid colored by photosynthesis rate (A).
"""
# Three.js uses Y-up; world is x=East, y=North, z=up → we use (x, z, y) for Three
def w2t(w: list[float]) -> list[float]:
return [w[0], w[2], w[1]]
A_zones = scene_data["A_zones"]
n_v = scene_data["n_vertical"]
n_h = scene_data["n_horizontal"]
grid_v = scene_data["grid_v"]
grid_z = scene_data["grid_z"]
cw = scene_data["canopy_width"]
ch = scene_data["canopy_height"]
sun_dir = scene_data["sun_direction"]
panel_corners = scene_data["panel_corners"]
vine_box = scene_data["vine_box"]
shadow_mask = scene_data["shadow_mask"]
A_flat = [A_zones[iz][ih] for iz in range(n_v) for ih in range(n_h)]
A_min = min(A_flat) if A_flat else 0
A_max = max(A_flat) if A_flat else 1
A_range = (A_max - A_min) or 1
# Color gradient: dark green (low A) -> bright green (high A); shaded can be darker
def color_for(iz: int, ih: int) -> list[float]:
a = A_zones[iz][ih]
shaded = shadow_mask[iz][ih]
t = (a - A_min) / A_range if A_range else 0
# 0–1 green gradient; shaded dimmed
g = 0.2 + 0.7 * t
r = 0.1
b = 0.1
if shaded:
g *= 0.6
r *= 0.6
b *= 0.6
return [r, g, b]
# Zone cell size
dv = (cw / n_h) if n_h else 0.1
dz = (ch / n_v) if n_v else 0.1
half_len = 0.4
cells_json = []
for iz in range(n_v):
for ih in range(n_h):
v_c = grid_v[ih]
z_c = grid_z[iz]
# World position of cell centre (row-local v,z; u=0 at centre)
# In world, row is along u; v is cross-row. We use row_offset=0 so vine at origin.
# shadow._row_v, _row_u: world x = v*_row_v[0]+u*_row_u[0], same for y. z = z_c
# For centre of row segment: u=0, v=v_c, z=z_c → world (v_c*_row_v[0], v_c*_row_v[1], z_c)
# We don't have _row_v in scene_data; approximate: vine_box gives us extent.
# Simpler: use local v,z and assume row_u points along -Y (315°), row_v along -X
# So world x ≈ -v_c*cos(45°)= -v_c*0.707, y ≈ v_c*0.707, z=z_c. Actually from settings row_azimuth=315.
# 315°: along-row = sin(315), cos(315) = -0.707, 0.707. So u direction in world is (-0.707, 0.707, 0).
# v direction (cross-row) = cos(315), -sin(315) = 0.707, 0.707. So world = (v*0.707, v*0.707, z).
wx = v_c * 0.707
wy = v_c * 0.707
wz = z_c
cells_json.append({
"pos": [wx, wz, wy],
"color": color_for(iz, ih),
"A": A_zones[iz][ih],
"shaded": shadow_mask[iz][ih],
})
panel_t3 = [w2t(p) for p in panel_corners]
sun_t3 = w2t(sun_dir)
# Sun sphere position (far along sun direction)
sun_dist = 8.0
sun_pos = [sun_t3[0] * sun_dist, sun_t3[1] * sun_dist, sun_t3[2] * sun_dist]
scene_json = json.dumps({
"cells": cells_json,
"panel": panel_t3,
"sun_pos": sun_pos,
"sun_dir": sun_t3,
"vine_box": [w2t(v) for v in vine_box],
"A_vine": scene_data["A_vine"],
"sunlit_fraction": scene_data["sunlit_fraction"],
"hour": scene_data["hour"],
"date": scene_data["date"],
"A_max": A_max,
"A_min": A_min,
})
html = f"""<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Vine photosynthesis 3D</title>
<style>
body {{ margin: 0; overflow: hidden; font-family: system-ui, sans-serif; }}
#info {{ position: absolute; left: 8px; top: 8px; color: #eee; background: rgba(0,0,0,0.6); padding: 8px 12px; border-radius: 8px; font-size: 12px; pointer-events: none; }}
#legend {{ position: absolute; right: 8px; top: 8px; color: #eee; background: rgba(0,0,0,0.6); padding: 8px 12px; border-radius: 8px; font-size: 11px; pointer-events: none; }}
</style>
</head>
<body>
<div id="info">Hour: {scene_data["hour"]:02d}:00 | Date: {scene_data["date"]} | A_vine: {scene_data["A_vine"]:.2f} µmol/m²/s | Sunlit: {scene_data["sunlit_fraction"]*100:.0f}%</div>
<div id="legend">Green = photosynthesis rate (dark = low, bright = high). Shaded zones are dimmer.</div>
<script type="importmap">
{{ "imports": {{
"three": "https://esm.sh/three",
"three/addons/OrbitControls": "https://esm.sh/three/examples/jsm/controls/OrbitControls.js"
}} }}
</script>
<script type="module">
import * as THREE from 'three';
import {{ OrbitControls }} from 'three/addons/OrbitControls';
const SCENE = {scene_json};
const scene = new THREE.Scene();
scene.background = new THREE.Color(0x87ceeb);
const camera = new THREE.PerspectiveCamera(50, window.innerWidth / window.innerHeight, 0.1, 100);
camera.position.set(4, 3, 4);
camera.lookAt(0, 0.6, 0);
const renderer = new THREE.WebGLRenderer({{ antialias: true }});
renderer.setSize(window.innerWidth, window.innerHeight);
renderer.setPixelRatio(window.devicePixelRatio);
document.body.appendChild(renderer.domElement);
const controls = new OrbitControls(camera, renderer.domElement);
controls.target.set(0, 0.6, 0);
controls.enableDamping = true;
// Sun directional light
const sunLight = new THREE.DirectionalLight(0xffffcc, 1.2);
sunLight.position.set(...SCENE.sun_pos);
sunLight.castShadow = false;
scene.add(sunLight);
// Ambient
scene.add(new THREE.AmbientLight(0x4444ff, 0.3));
// Sun sphere
const sunGeo = new THREE.SphereGeometry(0.15, 16, 16);
const sunMat = new THREE.MeshBasicMaterial({{ color: 0xffdd00 }});
const sunMesh = new THREE.Mesh(sunGeo, sunMat);
sunMesh.position.set(...SCENE.sun_pos);
scene.add(sunMesh);
// Panel (quad)
const panelGeom = new THREE.BufferGeometry();
const panelVerts = new Float32Array([
...SCENE.panel[0], ...SCENE.panel[1], ...SCENE.panel[2],
...SCENE.panel[0], ...SCENE.panel[2], ...SCENE.panel[3],
]);
panelGeom.setAttribute('position', new THREE.BufferAttribute(panelVerts, 3));
panelGeom.computeVertexNormals();
const panelMat = new THREE.MeshStandardMaterial({{ color: 0x333333, metalness: 0.6, roughness: 0.4 }});
const panelMesh = new THREE.Mesh(panelGeom, panelMat);
scene.add(panelMesh);
// Vine zone cells (boxes colored by A)
const cellGeoms = [];
SCENE.cells.forEach((c, i) => {{
const w = 0.08, h = 0.08, d = 0.5;
const box = new THREE.BoxGeometry(w, h, d);
const mat = new THREE.MeshStandardMaterial({{ color: new THREE.Color(c.color[0], c.color[1], c.color[2]) }});
const mesh = new THREE.Mesh(box, mat);
mesh.position.set(c.pos[0], c.pos[1], c.pos[2]);
mesh.rotation.y = Math.PI / 4;
scene.add(mesh);
cellGeoms.push(mesh);
}});
window.addEventListener('resize', () => {{
camera.aspect = window.innerWidth / window.innerHeight;
camera.updateProjectionMatrix();
renderer.setSize(window.innerWidth, window.innerHeight);
}});
function animate() {{
requestAnimationFrame(animate);
controls.update();
renderer.render(scene, camera);
}}
animate();
</script>
</body>
</html>"""
return html
|