elidedb-qbe / python /elidedb /store.py
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ElideDB query by example: no text, no model at query time
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"""Store: a directory of Parquet tables under a transaction log.
Everything is Parquet — sensor rows, the video frame index, embeddings,
centroids. No custom byte formats. The design borrows one idea from each
system it wants to be judged against:
- warehouses (Vertica/BigQuery): columnar + statistics pruning, projection
pushdown — Parquet row groups and column chunks give both natively.
- Spark: predicate pushdown to the scan; a query touches the minimum files,
row groups, and columns.
- Delta/Iceberg: the table is a log fold; snapshots, time travel, atomic
appends (log.py).
- C-Store: late materialization — video pixels are produced last, from byte
ranges the frame-index table points at; the raw media file is never copied
into the store.
- Kafka/streaming: time is the primary axis; every table MUST carry `ts`
(int64 ns, sorted within a file) — that is the one schema law here.
- lakehouse: open format means other engines read the store for free;
`Store.sql()` is DuckDB pointed at the very same files.
"""
from __future__ import annotations
import io
import json
import time
import contextlib
import fcntl
import importlib
import os
import uuid
from pathlib import Path
import numpy as np
import pyarrow as pa
import pyarrow.compute as pc
import pyarrow.parquet as pq
from .log import FileEntry, TableLog, fsync_file
ROW_GROUP_ROWS = 64 * 1024 # the amortize-vs-overfetch dial (Parquet's
# row-group size == SDX's chunk_target_rows)
ROW_GROUP_TARGET_BYTES = 8 * 1024 * 1024
def _row_width(schema: pa.Schema) -> int:
"""Approximate uncompressed bytes per row, for row-group sizing."""
w = 0
for f in schema:
t = f.type
try:
if pa.types.is_fixed_size_list(t):
w += t.list_size * (t.value_type.bit_width // 8)
else:
w += t.bit_width // 8
except (ValueError, AttributeError):
w += 32 # strings/lists: a guess is fine
return max(w, 1)
# THE DATABASE DOES NOT CACHE. Not yet, deliberately: a buffer pool is
# real work with real invalidation rules, and it is the LAST thing to
# build, after the layout and the pruning are right. Until then the
# honest position is that repeat reads should cost what first reads
# cost, so a benchmark number cannot be quietly borrowed from the OS.
#
# Reads therefore open store files with F_NOCACHE (macOS) / O_DIRECT-ish
# advice, which tells the kernel not to keep this file's pages in the
# unified buffer cache. That is scoped to OUR files: the system cache
# and every other process's data are untouched, which `sudo purge` can
# never say. Set ELIDEDB_CACHE=1 to opt back into the OS page cache.
_NOCACHE = os.environ.get("ELIDEDB_CACHE", "0") not in ("1", "true")
_F_NOCACHE = 48 # <sys/fcntl.h>, Darwin
def _uncached(path):
"""Open a store file so its pages are not retained by the kernel.
Returns a plain binary file object; pyarrow accepts any file-like,
so this drops in wherever a path was passed. Falls back to a normal
open anywhere the fcntl is unavailable (Linux, odd filesystems) -
losing the no-cache property is worth strictly less than crashing,
and the caller is told by ELIDEDB_CACHE what it asked for.
"""
f = open(path, "rb", buffering=0)
try:
fcntl.fcntl(f.fileno(), _F_NOCACHE, 1)
except Exception:
pass
return f
class _PF:
"""pq.ParquetFile that OWNS its file object and closes it.
The first version handed `_uncached(path)` straight to ParquetFile
and returned. ParquetFile does not take ownership, so every footer
read leaked one open file object - and a leaked Python file object
with a live buffer makes the interpreter hang at SHUTDOWN, not at
the point of the leak. That is why an inspection script printed all
of its output and then sat at 0% CPU for 27 minutes holding nothing
visible: it was stuck tearing down, and `lsof` showed zero because
the fd table was already gone.
Every read path since the no-cache change was leaking. Closing is
the fix; being a context manager as well means callers can be
explicit where it matters.
"""
__slots__ = ("_fh", "pf")
def __init__(self, path):
self._fh = _uncached(path) if _NOCACHE else None
self.pf = pq.ParquetFile(self._fh if self._fh is not None
else str(path))
def __getattr__(self, k):
return getattr(self.pf, k)
def __enter__(self):
return self
def __exit__(self, *a):
self.close()
def close(self):
try:
self.pf.close()
except Exception:
pass
if self._fh is not None:
try:
self._fh.close()
except Exception:
pass
self._fh = None
def __del__(self):
self.close()
def _pf(path):
"""pq.ParquetFile honouring the no-cache policy, and closing."""
return _PF(path)
def _read(path, **kw):
"""pq.read_table honouring the no-cache policy.
Reads through a _PF and COPIES the result, so the file object cannot
outlive this call. `with _uncached(path) as fh: pq.read_table(fh)`
looks safe and is not - pyarrow keeps a reference to the handle for
lazy access, so the `with` closes nothing and the leaked handle hangs
the interpreter at shutdown. That is the same failure the _pf fix
addressed, surviving in the other reader: a two-table scan would sit
at 0% CPU forever while a single-table one exited fine.
"""
if not _NOCACHE:
return pq.read_table(str(path), **kw)
f = _PF(path)
try:
cols = kw.get("columns")
filters = kw.get("filters")
t = f.pf.read(columns=cols)
if filters is not None:
t = t.filter(filters)
return t.combine_chunks() # materialise before the handle dies
finally:
f.close()
def _top(md, c: int) -> str:
"""Top-level column name for row-group column index `c`.
Parquet flattens nested types to LEAVES, and md.schema.names is the
leaf list: a fixed-size-list column named `vector` appears there as
`element`, with path_in_schema `vector.list.element`. Matching a
projection against the leaf name therefore never matched a vector
column, so its bytes were never charged - 8.7 MB per row group on
frame_vectors, silently absent from every elision number in a store
that is 87% vectors. Metrics that undercount are worse than no
metrics: they make the headline claim look better than it is.
"""
return md.row_group(0).column(c).path_in_schema.split(".")[0]
def _col_index(md, name: str):
"""Row-group column index for a TOP-LEVEL column name, or None."""
for c in range(md.num_columns):
if _top(md, c) == name:
return c
return None
def _max_end(table: pa.Table) -> int:
"""Latest interval END in this table: max(t1), falling back to
max(ts) for a table that has no t1 (point rows end where they
start)."""
col = "t1" if "t1" in table.column_names else "ts"
try:
v = pc.max(table.column(col)).as_py()
except Exception:
return 0
return int(v or 0)
def _zone(table: pa.Table, columns) -> dict:
"""File-level min/max for the columns a file is clustered on.
Recorded in the commit log, so a value predicate can drop whole
files from JSON already in memory - before any Parquet footer is
opened. Strings are kept as strings and numbers as numbers; the
comparison at read time is the caller's, and it must compare like
with like or it will prune wrongly rather than merely badly.
"""
z = {}
for c in columns or ():
if c not in table.column_names or c == "ts":
continue # ts already has its own dedicated pair
col = table.column(c)
try:
lo, hi = pc.min(col).as_py(), pc.max(col).as_py()
except pa.ArrowNotImplementedError:
continue # lists, structs: no order, no zone map
if lo is not None and hi is not None:
z[c] = [lo, hi]
return z
def write_parquet(table: pa.Table, path):
"""One writer for every file in the store. `ts` gets
DELTA_BINARY_PACKED — timestamps are near-arithmetic, so delta encoding
beats generic zstd ~3x on that column (the Gorilla/TSDB observation);
string columns keep dictionary encoding; everything rides zstd.
Row groups are sized by ROW WIDTH to a byte target, not a fixed row
count: at 64k rows a 1152-d float32 vector table packed ~295 MB into
ONE group, so time-range pruning inside a file could skip nothing —
the elision law applied to layout. A narrow sensor table still gets
tens of thousands of rows per group; a vector table gets ~1.8k, and a
2 s window read touches one group instead of the whole file."""
rows = min(ROW_GROUP_ROWS,
max(4096, ROW_GROUP_TARGET_BYTES // _row_width(table.schema)))
dict_cols = [f.name for f in table.schema
if pa.types.is_string(f.type) or pa.types.is_large_string(f.type)]
pq.write_table(table, path, row_group_size=rows,
compression="zstd",
use_dictionary=dict_cols,
# The PAGE INDEX (per-page min/max + offsets) is what
# lets a reader skip pages INSIDE a surviving row group
# — the layer that makes a columnar file behave like an
# index for selective reads. pyarrow omits it by
# default, so every file written before 2026-07-28 can
# only prune to row-group granularity. It costs a small
# constant in the footer and is read only when a query
# has a predicate that can use it.
write_page_index=True,
column_encoding={"ts": "DELTA_BINARY_PACKED"})
fsync_file(path) # durability: data reaches disk BEFORE the commit that
# references it — the write-ahead ordering rule
class QueryStats:
"""Bytes accounting: the elision number, file-granular.
Log-level pruning is exact (a pruned file contributes 0 bytes). Inside a
surviving file, Parquet's own row-group pruning + column projection cut
further; we report the surviving files' bytes as the upper bound actually
mapped, plus rows returned."""
def __init__(self):
self.corpus_bytes = 0
self.files_total = 0
self.files_touched = 0
self.bytes_touched = 0
self.rows_returned = 0
self.wall_ms = 0.0
@property
def elided_pct(self):
if not self.corpus_bytes:
return 0.0
b = min(self.bytes_touched, self.corpus_bytes)
return 100.0 * (self.corpus_bytes - b) / self.corpus_bytes
def __repr__(self):
return (f"<{self.files_touched}/{self.files_total} files, "
f"{self.bytes_touched:,} B touched of {self.corpus_bytes:,} B "
f"({self.elided_pct:.3f}% elided), {self.rows_returned:,} rows, "
f"{self.wall_ms:.1f} ms>")
class Table:
def __init__(self, store: "Store", name: str):
self.store = store
self.name = name
self.dir = store.dir / "tables" / name
self.log = TableLog(self.dir)
def state(self, version=None):
return self.log.read_state(version)
def history(self):
return self.log.history()
# ---- write path -------------------------------------------------------
def _validate(self, table: pa.Table, evolve: bool):
"""Consistency guarantees enforced at the door: ts present, int64,
never null; and the schema must match the table's existing schema
(same names ⇒ same types). evolve=True permits ADDING columns —
widening reads promote missing columns to null — but a type change
for an existing name is always an error, never a silent coercion."""
if "ts" not in table.column_names:
raise ValueError(f"table '{self.name}': a `ts` int64-ns column is "
"required — timestamps are the one schema law")
ts = table.column("ts")
if ts.type != pa.int64():
raise ValueError("`ts` must be int64 nanoseconds since epoch")
if ts.null_count:
raise ValueError(f"table '{self.name}': `ts` contains "
f"{ts.null_count} null(s) — every row must be "
"timestamped")
st = self.state()
if st.files:
# compare against the LATEST file: after additive evolution the
# newest schema is the table's current contract
existing = _pf(
self.dir / st.files[-1].path).schema_arrow
have = {f.name: f.type for f in existing}
new = {f.name: f.type for f in table.schema}
for name, typ in new.items():
if name in have and have[name] != typ:
raise ValueError(
f"table '{self.name}': column '{name}' is "
f"{have[name]} but incoming batch has {typ} — "
"type changes are never implicit")
added = set(new) - set(have)
missing = set(have) - set(new)
if (added or missing) and not evolve:
raise ValueError(
f"table '{self.name}': schema differs (new columns "
f"{sorted(added)}, absent columns {sorted(missing)}). "
"Pass evolve=True to allow additive evolution.")
return st
def _sorted(self, table: pa.Table) -> pa.Table:
order = pc.sort_indices(table.column("ts"))
if not pc.all(pc.equal(order, pa.array(range(len(table))))).as_py():
table = table.take(order) # ts-sorted files ⇒ tight zone maps
return table
# ---- layout policy ----------------------------------------------------
def set_layout(self, cluster_by: str, *, sort_by=None,
min_group_rows=256) -> int:
"""Declare the table's CLUSTER KEY once, for every writer.
Physical layout was a per-call argument, and the `events` table
is what that costs. write_once wrote it grouped by `kind`;
build_teacher rewrote it with plain replace(), ts-sorted. Same
table, two writers, and the store ended up holding the
unclustered one - so a lookup on `kind`, the verb, the single
most natural predicate in the corpus, had to open 100% of row
groups. Nothing errored. The table was simply no longer an
index, and only a footer audit would ever have said so.
Clustering is a property of a TABLE, the way a clustered index
is, not a decision each INSERT gets to re-make. Declared here,
it lands in the log - so it is versioned, travels with time
travel, and any writer that goes through append/replace honours
it without knowing it exists.
"""
st = self.state()
# A pure METADATA commit: no file added, none removed. The
# declaration is a new version, so it is auditable and time
# travel still lands on the layout that was in force then, but
# it does not rewrite a byte. Existing files keep whatever
# layout they were written with until something rebuilds them -
# declaring an index does not reorganise the table.
return self.log.commit(
op="layout", kind=st.kind, schema=st.schema,
meta={"layout": {
"cluster_by": cluster_by,
"sort_by": list(sort_by or [cluster_by, "ts"]),
"min_group_rows": int(min_group_rows)}})
def layout(self) -> dict | None:
return self.state().meta.get("layout")
def append(self, table: pa.Table, *, kind="timeseries", meta=None,
evolve=False) -> int:
lay = self.layout()
if lay:
return self.append_grouped(
table, lay["cluster_by"], kind=kind, meta=meta,
evolve=evolve, sort_by=lay["sort_by"],
min_group_rows=lay["min_group_rows"])
return self.append_batches([table], kind=kind, meta=meta,
evolve=evolve)
def append_batches(self, batches, *, kind="timeseries", meta=None,
evolve=False) -> int:
"""Write one file per batch, commit ONCE — a multi-gigabyte load is
a single atomic transaction with bounded memory."""
self.dir.mkdir(parents=True, exist_ok=True)
adds, schema = [], None
for batch in batches:
if len(batch) == 0:
continue
self._validate(batch, evolve)
batch = self._sorted(batch)
schema = batch.schema
fname = f"part-{uuid.uuid4().hex[:12]}.parquet"
path = self.dir / fname
write_parquet(batch, path)
tsv = batch.column("ts")
adds.append(FileEntry(fname, len(batch), path.stat().st_size,
tsv[0].as_py(), tsv[-1].as_py(),
{}, _max_end(batch)))
if not adds:
raise ValueError("nothing to append (all batches empty)")
return self.log.commit(op="append", kind=kind,
schema=str(schema), add=adds, meta=meta)
def append_grouped(self, table: pa.Table, group_col: str, *,
kind="timeseries", meta=None, evolve=False,
sort_by=None, replace=False,
min_group_rows: int = 1) -> int:
"""Write with ROW GROUPS ALIGNED TO A LOGICAL UNIT.
The default writer sizes row groups by bytes, which is right for a
sensor stream and wrong for anything whose query unit is an
object. The frames table is the proof: 39,026 rows landed in ONE
row group of 981 KB, so a query for a single episode decompressed
every frame in the store and layer-2 pruning measured 0.45%.
Here each distinct `group_col` value becomes its own row group, so
"give me episode X" touches exactly one. The trade is footer size
— 1,122 groups x 9 columns is ~10k column-chunk entries of
metadata, and the footer is read on EVERY query — which is the
random-access-vs-metadata tension made explicit rather than
inherited from a default.
`sort_by` is recorded in the footer as Parquet sorting_columns, so
a reader can know the file is clustered without trusting us.
"""
self.dir.mkdir(parents=True, exist_ok=True)
if len(table) == 0:
raise ValueError("nothing to write")
self._validate(table, evolve)
sort_by = sort_by or [group_col, "ts"]
sort_by = [c for c in sort_by if c in table.column_names]
table = table.take(pc.sort_indices(
table, sort_keys=[(c, "ascending") for c in sort_by]))
g = table.column(group_col).to_pylist()
raw, start = [], 0
for i in range(1, len(g) + 1):
if i == len(g) or g[i] != g[start]:
raw.append((start, i - start))
start = i
# MERGE ADJACENT GROUPS UP TO A ROW FLOOR. One group per distinct
# value sounds maximally prunable and is a trap: metadata costs a
# fixed amount per group PER COLUMN, so tiny groups invert the
# ratio. Measured on the labels table at one-group-per-value -
# 406 groups over 7,573 rows - the footer reached 286,796 bytes
# against 283,957 bytes of actual column data. The footer was
# LARGER THAN THE DATA, and it is read on every query, so the
# "index" cost more to consult than the table cost to scan.
#
# The SORT is what makes statistics prunable; group size is an
# independent dial. Merging keeps values contiguous, so each
# group still covers a narrow min/max range, at a fraction of the
# metadata.
bounds = []
if min_group_rows <= 1:
bounds = raw
else:
off = cur = 0
for s, n in raw:
cur += n
if cur >= min_group_rows:
bounds.append((off, cur))
off, cur = s + n, 0
if cur:
bounds.append((off, cur))
fname = f"part-{uuid.uuid4().hex[:12]}.parquet"
path = self.dir / fname
idx = {c: table.column_names.index(c) for c in sort_by}
sc = [pq.SortingColumn(idx[c]) for c in sort_by]
dict_cols = [f.name for f in table.schema
if pa.types.is_string(f.type)
or pa.types.is_large_string(f.type)]
w = pq.ParquetWriter(path, table.schema, compression="zstd",
use_dictionary=dict_cols,
write_page_index=True,
sorting_columns=sc,
column_encoding={"ts": "DELTA_BINARY_PACKED"})
try:
for off, n in bounds:
w.write_table(table.slice(off, n), row_group_size=n)
finally:
w.close()
fsync_file(path)
st = self.state()
tsv = table.column("ts")
add = [FileEntry(fname, len(table), path.stat().st_size,
tsv[0].as_py(), tsv[-1].as_py(),
_zone(table, sort_by), _max_end(table))]
return self.log.commit(
op="replace" if replace else "append", kind=kind,
schema=str(table.schema), add=add,
remove=[f.path for f in st.files] if replace else [],
meta=dict(meta or {}, row_groups=len(bounds),
grouped_by=group_col, sorted_by=sort_by))
def replace(self, table: pa.Table, *, kind="timeseries", meta=None,
evolve=False) -> int:
"""REBUILD IN PLACE: these rows become the table, in one commit.
Derived tables — events, answers, anything recomputed from the
frames — need this and `append` is wrong for them. Recomputing
the teacher's events with `append` took the table from 8,263 to
16,526 rows, with `agent` at exactly 2x the demo count, and left
every demo holding BOTH the old and the new typing of the same
transition. Nothing errored; consumers that read a demo's kinds
as a set just started seeing contradictions.
Old files are removed in the same transaction that adds the new
ones, so readers see one or the other and never the union, and
the previous version stays addressable through the log.
A rebuild MUST NOT quietly restore the table to ts-sorted: if a
cluster key is declared, this rewrites through the grouped
writer. That is exactly how `events` lost its layout - a
recompute through replace() undid write_once's grouping."""
lay = self.layout()
if lay:
return self.append_grouped(
table, lay["cluster_by"], kind=kind, meta=meta,
evolve=evolve, sort_by=lay["sort_by"], replace=True,
min_group_rows=lay["min_group_rows"])
st = self.state()
prev = [f.path for f in st.files]
self.dir.mkdir(parents=True, exist_ok=True)
if len(table) == 0:
raise ValueError("replace() with an empty table would drop "
"the table; use delete_range to truncate")
self._validate(table, evolve)
table = self._sorted(table)
fname = f"part-{uuid.uuid4().hex[:12]}.parquet"
path = self.dir / fname
write_parquet(table, path)
tsv = table.column("ts")
add = [FileEntry(fname, len(table), path.stat().st_size,
tsv[0].as_py(), tsv[-1].as_py(),
{}, _max_end(table))]
return self.log.commit(op="replace", kind=kind,
schema=str(table.schema), add=add,
remove=prev,
meta=dict(meta or {},
rows_before=st.rows,
files_replaced=len(prev)))
def compact(self, target_rows_per_file: int = 8_000_000) -> dict:
"""OPTIMIZE: rewrite the active file set into few large, ts-sorted,
delta-encoded files — one atomic replace-commit. Fixes the many-
small-files tax that every append-only log accumulates, and applies
the current encodings to data written before them."""
st = self.state()
if not st.files:
return {"files_before": 0, "files_after": 0}
data = self.scan()
before_bytes = st.bytes
from .log import FileEntry as FE
adds = []
for lo in range(0, len(data), target_rows_per_file):
part = data.slice(lo, target_rows_per_file)
fname = f"part-{uuid.uuid4().hex[:12]}.parquet"
path = self.dir / fname
write_parquet(part, path)
tsv = part.column("ts")
adds.append(FE(fname, len(part), path.stat().st_size,
tsv[0].as_py(), tsv[-1].as_py()))
self.log.commit(op="compact", kind=st.kind, schema=str(data.schema),
add=adds, remove=[f.path for f in st.files],
meta={"files_before": len(st.files),
"bytes_before": before_bytes})
after = sum(a.bytes for a in adds)
return {"files_before": len(st.files), "files_after": len(adds),
"bytes_before": before_bytes, "bytes_after": after,
"ratio": round(before_bytes / max(after, 1), 2)}
def delete_range(self, t0: int, t1: int) -> dict:
"""Delete rows with ts in [t0, t1] — the 'scrub that run' operation
(bad takes, PII, retention). Files fully inside the range are just
dropped; overlapping files are rewritten without the range; files
outside are untouched. One atomic commit; prior versions still see
the data (time travel is the audit trail) until their files are
garbage-collected."""
import pyarrow.compute as pc
from .log import FileEntry as FE
st = self.state()
removes, adds, dropped = [], [], 0
for f in st.files:
if not f.overlaps(t0, t1):
continue # untouched
removes.append(f.path)
if t0 <= f.min_ts and f.max_ts <= t1:
dropped += f.rows
continue # fully covered: no rewrite needed
t = _read(self.dir / f.path)
keep = t.filter(pc.or_(pc.less(t.column("ts"), t0),
pc.greater(t.column("ts"), t1)))
dropped += len(t) - len(keep)
if len(keep):
fname = f"part-{uuid.uuid4().hex[:12]}.parquet"
write_parquet(keep, self.dir / fname)
tsv = keep.column("ts")
adds.append(FE(fname, len(keep),
(self.dir / fname).stat().st_size,
tsv[0].as_py(), tsv[-1].as_py()))
if not removes:
return {"rows_deleted": 0}
self.log.commit(op="delete", kind=st.kind, schema=st.schema,
add=adds, remove=removes,
meta={"deleted_range": [t0, t1],
"rows_deleted": dropped})
return {"rows_deleted": dropped, "files_rewritten": len(adds),
"files_removed": len(removes)}
# ---- secondary indexes (B+ tree over any numeric column) --------------
def create_index(self, column: str, order: int = 256) -> dict:
"""Build an immutable, bulk-loaded B+ tree over `column` for the
CURRENT version (BPT1 — same bytes the C++ engine reads). Zone maps
prune nothing on unsorted columns; this re-sorts (value → row
location) once, so point/range predicates touch only the row groups
that actually contain hits. Rebuild after appends (`create_index`
again) — the artifact is version-suffixed like any derived state."""
from . import bptree
st = self.state()
keys, vals = [], []
for fi, f in enumerate(st.files):
col = _read(self.dir / f.path, columns=[column]) \
.column(column).to_numpy(zero_copy_only=False)
keys.append(bptree.encode_key(col))
vals.append((np.uint64(fi) << np.uint64(40)) |
np.arange(len(col), dtype=np.uint64))
img = bptree.build(np.concatenate(keys) if keys else
np.array([], np.int64),
np.concatenate(vals) if vals else
np.array([], np.uint64), order=order)
ixdir = self.dir / "_index"
ixdir.mkdir(exist_ok=True)
# A secondary index is a DERIVED sidecar, not table data: building it
# does NOT advance the log (that would be a version with identical
# data). The artifact is keyed to the version it was built for; a
# reader accepts it only while that version's FILE SET still matches
# the current one — appends invalidate it, so rebuild after appends.
path = ixdir / f"{column}.v{st.version}.bpt"
tmp = ixdir / f".{column}.tmp"
tmp.write_bytes(img)
fsync_file(tmp)
tmp.replace(path)
return {"column": column, "keys": int(sum(len(k) for k in keys)),
"bytes": len(img), "version": st.version}
def _open_index(self, column: str, st):
from . import bptree
ixdir = self.dir / "_index"
if not ixdir.is_dir():
return None
current = {f.path for f in st.files}
for p in sorted(ixdir.glob(f"{column}.v*.bpt"), reverse=True):
v = int(p.stem.split(".v")[-1])
if {f.path for f in self.state(v).files} == current:
return bptree.Reader.open(p), p.stat().st_size
return None
def where(self, column: str, op: str, value, value2=None, columns=None,
stats: QueryStats | None = None) -> pa.Table:
"""Predicate pushdown on a NON-time column. With a B+ index: descend,
map hits to (file, row group), read ONLY those row groups, then take
the exact rows. Without one: zone-map scan + filter, honestly counted
as such. ops: ==, >=, <=, between."""
from . import bptree
stats = stats if stats is not None else QueryStats()
st = self.state()
stats.files_total += len(st.files)
stats.corpus_bytes += st.bytes
NEG_INF, POS_INF = -(1 << 63), (1 << 63) - 1 # full i64 range:
# float encodings legitimately occupy the far ends of int64
lo, hi = {"==": (value, value),
">=": (value, None), "<=": (None, value),
"between": (value, value2)}[op]
ix = self._open_index(column, st)
if ix is None:
# fallback: full scan with an honest bill
t = self.scan(stats=stats)
arr = t.column(column)
m = None
if lo is not None:
m = pc.greater_equal(arr, lo)
if hi is not None:
c = pc.less_equal(arr, hi)
m = c if m is None else pc.and_(m, c)
out = t.filter(m)
stats.rows_returned += len(out)
return out
reader, ix_bytes = ix
stats.bytes_touched += ix_bytes # the index read is real I/O too
locs = reader.range(
bptree.encode_scalar(lo) if lo is not None else NEG_INF,
bptree.encode_scalar(hi) if hi is not None else POS_INF)
locs = np.sort(np.asarray(locs, dtype=np.uint64))
file_ids = (locs >> np.uint64(40)).astype(np.int64)
rows = (locs & np.uint64((1 << 40) - 1)).astype(np.int64)
parts = []
want_cols = None if columns is None else \
(["ts", *columns] if "ts" not in columns else list(columns))
for fi in np.unique(file_ids):
fmask = file_ids == fi
frows = rows[fmask]
pf = _pf(self.dir / st.files[fi].path)
md = pf.metadata
# metadata-driven row->group mapping: group sizes are whatever
# the writer chose (now width-adaptive), so boundaries come
# from the footer, never from an assumed constant
rg_start = np.cumsum(
[0] + [md.row_group(g).num_rows
for g in range(md.num_row_groups)])
g_of = np.searchsorted(rg_start, frows, side="right") - 1
groups = np.unique(g_of).tolist()
for g in groups:
for c in range(md.row_group(g).num_columns):
if want_cols is None or _top(md, c) in want_cols:
stats.bytes_touched += \
md.row_group(g).column(c).total_compressed_size
tbl = pf.read_row_groups(groups, columns=want_cols)
# map absolute rows -> positions inside the concatenated groups
base = np.cumsum([0] + [md.row_group(g).num_rows for g in groups])
gsel = {g: k for k, g in enumerate(groups)}
gpos = np.array([gsel[g] for g in g_of])
local = frows - rg_start[g_of] + base[gpos]
parts.append(tbl.take(pa.array(np.sort(local))))
stats.files_touched += 1
out = pa.concat_tables(parts) if parts else \
self.scan(0, -1, columns=columns) # empty, right schema
stats.rows_returned += len(out)
return out
def files(self, version=None) -> list[str]:
"""Absolute paths of this snapshot's Parquet files — the open-format
contract: hand these to ANY engine (DuckDB, Spark, Polars, a
distributed dataframe library) and it reads the table with zero
export and zero ElideDB code."""
return [str(self.dir / f.path) for f in self.state(version).files]
# ---- read path --------------------------------------------------------
def scan_values(self, column: str, values, columns=None,
version=None, stats: QueryStats | None = None):
"""VALUE PREDICATE PUSHED INTO THE READER, not applied after it.
Reading the whole table and calling .filter() afterwards is what
makes a store behave like a filesystem: correct answer, no
pruning. Measured on the labels table before this existed - a
lookup for one name touched 502 KB of 711 KB, 71% of the table,
to return 26 episodes.
Here the predicate goes to the Parquet reader, so row groups
whose min/max for `column` cannot contain any requested value are
never decompressed. It works because build_index sorts labels by
(kind, value) and gives each value its own row group - sorted
layout is what turns statistics into an index.
bytes_touched is charged the same way: footer plus only the row
groups whose statistics overlap the requested values.
"""
st = self.state(version)
stats = stats if stats is not None else QueryStats()
stats.files_total += len(st.files)
stats.corpus_bytes += st.bytes
# Values keep their OWN type. Stringifying them first, as this
# did, silently breaks numeric columns: "51" < "7" lexically, so
# a lookup for object 7 would drop the group holding it. A
# comparison against Parquet statistics has to be in the
# column's order, not in string order.
want = sorted(set(values))
if columns is not None:
columns = list(dict.fromkeys([*columns, column, "ts"]))
lo, hi = want[0], want[-1]
parts = []
for f in st.files:
# LAYER 0: the commit log's zone map, already in memory. A
# file that provably holds nothing in [lo, hi] is dropped
# here, before its footer is even opened.
if not f.may_contain(column, lo, hi):
continue
p = self.dir / f.path
pf = _pf(p)
md = pf.metadata
ci = _col_index(md, column)
if ci is None:
continue
groups, touched = [], 0
for g in range(md.num_row_groups):
rg = md.row_group(g)
s = rg.column(ci).statistics
# LAYER 1: row-group statistics. min/max is a RANGE
# test, so a group is skipped only when every requested
# value falls outside [min, max].
if s is not None and s.min is not None:
try:
if hi < s.min or lo > s.max:
continue
except TypeError:
pass # mixed types: cannot prove empty
groups.append(g)
for c in range(rg.num_columns):
if columns is None or _top(md, c) in columns:
touched += rg.column(c).total_compressed_size
stats.files_touched += 1
stats.bytes_touched += md.serialized_size + touched
if not groups:
continue
tb = pf.read_row_groups(groups, columns=columns)
parts.append(tb.filter(pc.field(column).isin(want)))
if not parts:
return pa.table({"ts": pa.array([], pa.int64())}), stats
out = pa.concat_tables(parts, promote_options="permissive")
stats.rows_returned += len(out)
return out, stats
def scan(self, t0=None, t1=None, columns=None, version=None,
stats: QueryStats | None = None) -> pa.Table:
st = self.state(version)
stats = stats if stats is not None else QueryStats()
stats.files_total += len(st.files)
stats.corpus_bytes += st.bytes
if columns is not None and "ts" not in columns:
columns = ["ts", *columns] # ts always rides along: it is the
# sort key and the alignment axis
# layer 1: log-level file pruning (zone maps in the commit entries)
# INTERVAL overlap, not start-point containment. See
# FileEntry.overlaps: comparing t0 against max(ts) drops any row
# whose interval began before the window and had not ended.
files = [f for f in st.files if f.overlaps(t0, t1)]
stats.files_touched += len(files)
# layer 2 accounting: row-group zone maps from the Parquet footer.
# A surviving file is charged its footer + only the row groups whose
# ts min/max overlap the window — which is exactly what the reader
# below will materialize. Same math as warehouse skip-indexes.
for f in files:
pf = _pf(self.dir / f.path)
md = pf.metadata
footer_bytes = md.serialized_size
ts_idx = _col_index(md, "ts") or 0
# SAME INTERVAL FIX, one layer down. A row group is skipped
# only if no interval in it can reach the window: compare t0
# against max(t1) where the table has a t1, and against
# max(ts) only when it does not.
e_idx = _col_index(md, "t1")
touched = 0
for rg in range(md.num_row_groups):
g = md.row_group(rg)
st_ts = g.column(ts_idx).statistics
st_e = (g.column(e_idx).statistics
if e_idx is not None else st_ts)
end = (st_e.max if st_e is not None and st_e.max is not None
else (st_ts.max if st_ts is not None else None))
if end is not None and t0 is not None and end < t0:
continue
if st_ts is not None and t1 is not None and st_ts.min > t1:
continue
for c in range(g.num_columns):
col = g.column(c)
if (columns is None or _top(md, c) in columns
or c == ts_idx):
touched += col.total_compressed_size
stats.bytes_touched += footer_bytes + touched
if not files:
empty = pa.schema([("ts", pa.int64())])
return pa.table({"ts": pa.array([], pa.int64())}).cast(empty)
# layer 2: Parquet row-group pruning + projection pushdown
# INTERVAL OVERLAP, not start containment. `ts >= t0` asks
# "did it START inside the window", which is a different
# question and drops every row still in progress when the window
# opens. Overlap is (row.t1 >= t0) AND (row.ts <= t1); with no
# t1 column a row is a point and the two coincide.
has_end = "t1" in (pq.ParquetFile(
_uncached(self.dir / files[0].path) if _NOCACHE
else str(self.dir / files[0].path)).schema_arrow.names)
end_f = pc.field("t1") if has_end else pc.field("ts")
filt = None
if t0 is not None:
filt = end_f >= t0
if t1 is not None:
c = pc.field("ts") <= t1
filt = c if filt is None else filt & c
if has_end and columns is not None and "t1" not in columns:
columns = [*columns, "t1"] # the predicate needs it
parts = [_read(self.dir / f.path, columns=columns,
filters=filt) for f in files]
out = pa.concat_tables(parts, promote_options="permissive")
if len(parts) > 1: # files may interleave in time across streams
out = out.take(pc.sort_indices(out.column("ts")))
stats.rows_returned += len(out)
return out
class Store:
FORMAT = "elidedb/2"
def __init__(self, path: str | Path):
self.dir = Path(path)
meta_path = self.dir / "_store.json"
if not meta_path.exists():
raise FileNotFoundError(
f"{path} is not a store (no _store.json) — Store.create() it")
self.meta = json.loads(meta_path.read_text())
# ---- lifecycle --------------------------------------------------------
@staticmethod
def create(path: str | Path, name: str) -> "Store":
p = Path(path)
(p / "tables").mkdir(parents=True, exist_ok=True)
meta = {"format": Store.FORMAT, "name": name,
"created_utc": time.strftime("%Y-%m-%dT%H:%M:%SZ", time.gmtime())}
(p / "_store.json").write_text(json.dumps(meta, indent=1))
return Store(p)
@staticmethod
def open(path: str | Path) -> "Store":
return Store(path)
@property
def name(self):
return self.meta["name"]
def snapshot(self) -> dict:
"""Pin every table's current version in one call. Pass the result as
`version=` to window/aligned/sql/scan for a CONSISTENT multi-table
read: no writer that commits after this call can skew your view.
(Per-table commits are serializable on their own log — the same
isolation model as Delta and Iceberg; the pin extends it across
tables for readers.)"""
return {name: self.table(name).state().version
for name in self.tables()}
@staticmethod
def _ver(version, name):
if isinstance(version, dict):
return version.get(name)
return version
def vacuum(self, retain_versions: int = 3, dry_run: bool = False) -> dict:
"""Garbage-collect files no snapshot within the retention window can
reach: parquet parts removed by compaction/delete, and managed media
no retained frame-index version references. Time travel remains
intact for the last `retain_versions` versions of every table;
earlier versions become unreadable — that is the explicit trade this
command makes, and why it is manual."""
freed = 0
removed = []
media_refs: set[str] = set()
for name in self.tables():
tab = self.table(name)
versions = tab.log.versions()
keep_versions = versions[-retain_versions:] if versions else []
referenced = set()
for v in keep_versions:
st = tab.state(v)
referenced |= {f.path for f in st.files}
if st.kind == "frame_index":
tbl = tab.scan(version=v)
if "source" in tbl.column_names:
media_refs |= {s for s in
set(tbl.column("source").to_pylist())
if s.startswith("@")}
for f in tab.dir.glob("part-*.parquet"):
if f.name not in referenced:
freed += f.stat().st_size
removed.append(str(f.relative_to(self.dir)))
if not dry_run:
f.unlink()
media = self.dir / "media"
if media.is_dir():
for m in media.iterdir():
if f"@media/{m.name}" not in media_refs:
freed += m.stat().st_size
removed.append(f"media/{m.name}")
if not dry_run:
m.unlink()
return {"files_removed": len(removed), "bytes_freed": freed,
"dry_run": dry_run, "removed": removed[:10]}
def tables(self) -> list[str]:
root = self.dir / "tables"
if not root.is_dir():
return []
return sorted(p.name for p in root.iterdir() if (p / "_log").is_dir())
def table(self, name: str) -> Table:
return Table(self, name)
def drop_caches(self) -> dict:
"""Forget everything this store has memoised. Nothing else.
The point is scope. `sudo purge` empties the whole machine's
unified buffer cache - every other process's working set with
it - which makes a benchmark both unrepeatable and rude. What a
database should be able to say is "drop MY cache", so this
clears only what ElideDB itself holds: the derived matrices
memoised per (store, version) in context.py and cracked.py.
File pages are handled separately and earlier: store reads open
with F_NOCACHE, so the kernel is never asked to retain them in
the first place. Nothing to evict beats evicting.
Loaded model weights are NOT dropped - they are not a cache of
the data, they are the program.
"""
out = {}
for mod, names in ((".context", ("_CTX_CACHE", "_SPACE_CACHE")),
(".cracked", ("_CACHE",))):
try:
m = importlib.import_module(mod, __package__)
except Exception:
continue
for n in names:
d = getattr(m, n, None)
if isinstance(d, dict):
out[f"{mod.lstrip('.')}.{n}"] = len(d)
d.clear()
out["file_pages"] = "not cached (F_NOCACHE)" if _NOCACHE else "OS"
return out
@contextlib.contextmanager
def measure(self):
"""Charge every read inside this block to one QueryStats.
`scan` and `scan_values` already account honestly, but they
account PER CALL, and a retrieval query fans out across a dozen
channel tables through code that never threads a stats object
through. Threading one through every channel would touch every
caller for a number none of them care about; wrapping the two
entry points for the duration of a block gets the same figure
with the accounting living in exactly one place.
with db.measure() as st:
search_set(db, "open the drawer")
st.bytes_touched, st.elided_pct
corpus_bytes is the whole store, not the sum of the tables that
happened to be touched - the elision claim is against everything
that could have been read, or it means nothing.
"""
stats = QueryStats()
stats.corpus_bytes = sum(self.table(t).state().bytes
for t in self.tables())
scan, values = Table.scan, Table.scan_values
def scan_m(self_, *a, stats=None, **kw):
local = QueryStats()
out = scan(self_, *a, stats=local, **kw)
_fold(stats or _NULL, local)
_fold(stats_outer, local)
return out
def values_m(self_, *a, stats=None, **kw):
local = QueryStats()
out = values(self_, *a, stats=local, **kw)
_fold(stats or _NULL, local)
_fold(stats_outer, local)
return out
stats_outer = stats
Table.scan, Table.scan_values = scan_m, values_m
try:
yield stats
finally:
Table.scan, Table.scan_values = scan, values
def describe(self) -> list[dict]:
out = []
for name in self.tables():
st = self.table(name).state()
out.append({"table": name, "kind": st.kind, "version": st.version,
"rows": st.rows, "bytes": st.bytes,
"min_ts": st.min_ts, "max_ts": st.max_ts,
"files": len(st.files), "meta": st.meta})
return out
# ---- friendly ingest --------------------------------------------------
def ingest_rows(self, table: str, data, ts_column="ts", ts_unit="auto",
meta=None, evolve=False) -> int:
"""Append rows from a pandas DataFrame / dict of arrays / pyarrow
Table / CSV / Parquet path.
Friendly on purpose: `ts_column` may be a datetime column, an ISO-8601
string column, or epoch numbers in s/ms/us/ns — `ts_unit="auto"`
detects the epoch unit by magnitude (an explicit unit always wins)."""
import os as _os
import pandas as pd
if isinstance(data, (str, Path)):
p = str(data)
if p.endswith((".parquet", ".pq")):
data = pd.read_parquet(p)
elif _os.path.getsize(p) > 128 * 1024 * 1024:
# memory-bounded load: stream the CSV in chunks, one file per
# chunk, ONE atomic commit for the whole load
def gen():
for chunk in pd.read_csv(p, chunksize=2_000_000):
yield self._normalize_ts(chunk, ts_column, ts_unit)
return self.table(table).append_batches(gen(), meta=meta)
else:
data = pd.read_csv(p)
if isinstance(data, dict):
data = pd.DataFrame(data)
if isinstance(data, pd.DataFrame):
data = self._normalize_ts(data, ts_column, ts_unit)
return self.table(table).append(data, meta=meta, evolve=evolve)
@staticmethod
def _normalize_ts(df, ts_column, ts_unit) -> pa.Table:
import pandas as pd
if ts_column not in df.columns:
raise ValueError(
f"no column '{ts_column}' — available: "
f"{list(df.columns)} (pass ts_column=...)")
df = df.rename(columns={ts_column: "ts"}).copy()
col = df["ts"]
if pd.api.types.is_datetime64_any_dtype(col):
df["ts"] = col.astype("int64") # datetime64 is already ns
elif col.dtype == object or pd.api.types.is_string_dtype(col):
df["ts"] = pd.to_datetime(col).astype("int64") # ISO strings
else:
if ts_unit == "auto":
# epoch magnitude: seconds ~1e9, ms ~1e12, us ~1e15, ns ~1e18
m = float(pd.Series(col).abs().median())
ts_unit = ("s" if m < 1e11 else "ms" if m < 1e14
else "us" if m < 1e17 else "ns")
mult = {"ns": 1, "us": 1_000, "ms": 1_000_000,
"s": 1_000_000_000}[ts_unit]
df["ts"] = (col.astype("float64") * mult).round().astype("int64")
return pa.Table.from_pandas(df, preserve_index=False)
def _media_dest(self, src: Path) -> Path:
import hashlib
h = hashlib.sha1(str(src.resolve()).encode()).hexdigest()[:8]
media = self.dir / "media"
media.mkdir(exist_ok=True)
return media / f"{src.stem}-{h}{src.suffix}"
def ingest_video(self, table: str, video_path, timestamps_ns=None,
stream=None, meta=None, copy=True, transcode=None,
gop_s: float = 1.0, crf: int = 26) -> int:
"""Index a video file: packet scan → frame_index Parquet rows.
copy=True (default): the media file is copied into the store's
`media/` directory first, so the store directory IS the complete,
portable database. copy=False indexes the file in place.
transcode="hevc"|"h264": re-encode the managed copy as a compressed
elementary stream (≈10-25x smaller than MJPEG at like quality) with a
forced keyframe every `gop_s` seconds. Random access becomes
GOP-granular instead of frame-exact — `gop_s` IS the seekability-vs-
compression dial, chosen per table at ingest, and decode reads
exactly one GOP span per window."""
import shutil
import subprocess
from .fftools import find
from .video import scan_video_packets
src = Path(video_path)
if transcode:
assert transcode in ("hevc", "h264")
if timestamps_ns is None: # take pts from the source container
probe = scan_video_packets(src)
timestamps_ns = probe["ts"].to_pylist()
n_in = len(timestamps_ns)
span_s = max((timestamps_ns[-1] - timestamps_ns[0]) / 1e9, 0.1)
fps = max((n_in - 1) / span_s, 1.0)
g = max(1, round(gop_s * fps))
dest = self._media_dest(src).with_suffix(f".{transcode}")
if not dest.exists():
enc = "libx265" if transcode == "hevc" else "libx264"
subprocess.run(
[find("ffmpeg"), "-v", "error", "-y", "-i", str(src),
"-c:v", enc, "-preset", "fast", "-crf", str(crf),
"-g", str(g), "-keyint_min", str(g), "-an",
"-f", transcode, str(dest)], check=True)
scanned_path, source_ref = dest, f"@media/{dest.name}"
elif copy:
dest = self._media_dest(src)
if not dest.exists():
shutil.copy2(src, dest)
scanned_path, source_ref = dest, f"@media/{dest.name}"
else:
scanned_path = src
source_ref = str(src.resolve())
rows = scan_video_packets(scanned_path, timestamps_ns)
n = len(rows["ts"])
rows["source"] = pa.array([source_ref] * n)
rows["stream"] = [stream or src.stem] * n
t = pa.table(rows)
return self.table(table).append(
t, kind="frame_index",
meta={"source": source_ref, "original": str(src.resolve()),
**({"transcode": transcode, "gop_s": gop_s, "crf": crf}
if transcode else {}),
**(meta or {})})
def adopt_media(self, table: str = "frames", verbose=True) -> dict:
"""Make the store standalone: copy every externally-referenced media
file into `media/` and rewrite the frame index to store-relative
paths. One replace-commit per call — old index versions still resolve
(the external files are not deleted)."""
import shutil
import uuid as _uuid
from .log import FileEntry
tab = self.table(table)
st = tab.state()
if st.kind != "frame_index":
raise ValueError(f"{table} is not a frame_index table")
t = tab.scan()
srcs = t.column("source").to_pylist()
external = sorted({s for s in srcs if not s.startswith("@")})
if not external:
return {"adopted": 0, "bytes": 0}
mapping, copied = {}, 0
for s in external:
p = Path(s)
if not p.exists():
raise FileNotFoundError(f"referenced media missing: {s}")
dest = self._media_dest(p)
if not dest.exists():
shutil.copy2(p, dest)
copied += dest.stat().st_size
mapping[s] = f"@media/{dest.name}"
if verbose:
print(f" adopted {p.name} -> media/{dest.name}")
new_src = pa.array([mapping.get(s, s) for s in srcs])
t = t.set_column(t.column_names.index("source"), "source", new_src)
fname = f"part-{_uuid.uuid4().hex[:12]}.parquet"
path = self.dir / "tables" / table / fname
write_parquet(t, path)
tsv = t.column("ts").to_numpy()
tab.log.commit(op="adopt-media", kind="frame_index",
schema=str(t.schema),
add=[FileEntry(fname, len(t), path.stat().st_size,
int(tsv.min()), int(tsv.max()))],
remove=[f.path for f in st.files],
meta={"media_files": len(external)})
return {"adopted": len(external), "bytes": copied}
# ---- queries ----------------------------------------------------------
def window(self, t0: int, t1: int, tables=None, columns=None,
version=None):
"""The multimodal read: every requested table filtered to [t0, t1].
frame_index tables come back as FrameSet (lazy byte-range decode)."""
from .video import FrameSet
stats = QueryStats()
start = time.perf_counter()
out = {}
names = tables
if names is None:
# Default to the DATA tables. Index artifacts (embeddings,
# centroids, frame_vectors, context, ...) are timestamped too, so
# they would otherwise be dragged into every window read and drag
# thousands of 1152-d vectors with them. Ask for them by name and
# you still get them.
names = [n for n in self.tables()
if self.table(n).state(self._ver(version, n)).kind
not in ("embeddings", "centroids")]
for name in names:
tab = self.table(name)
v = self._ver(version, name)
st = tab.state(v)
cols = columns.get(name) if isinstance(columns, dict) else columns
data = tab.scan(t0, t1, columns=cols, version=v, stats=stats)
out[name] = FrameSet(self, name, data) if st.kind == "frame_index" \
else data
stats.wall_ms = (time.perf_counter() - start) * 1e3
return out, stats
def aligned(self, t0, t1, rate_hz, tables=None, interp="nearest",
version=None, edge_guard_s: float = 1.0):
"""Query-time alignment: resample numeric columns of the requested
timeseries tables onto one [t0, t1] timeline at rate_hz."""
timeline = np.arange(t0, t1 + 1, int(1e9 / rate_hz), dtype=np.int64)
guard = int(edge_guard_s * 1e9) # neighbors just outside the window
# make edge interpolation exact
out = {"timeline_ns": timeline}
stats = QueryStats()
for name in (tables or self.tables()):
tab = self.table(name)
v = self._ver(version, name)
if tab.state(v).kind != "timeseries":
continue
data = tab.scan(t0 - guard, t1 + guard, version=v, stats=stats)
if len(data) == 0:
continue
ts = data.column("ts").to_numpy()
cols = {}
for cname in data.column_names:
if cname == "ts":
continue
arr = data.column(cname)
if not pa.types.is_floating(arr.type) and \
not pa.types.is_integer(arr.type):
continue
v = arr.to_numpy().astype(np.float64)
if interp == "linear":
cols[cname] = np.interp(timeline, ts, v)
else: # nearest
idx = np.searchsorted(ts, timeline)
idx = np.clip(idx, 0, len(ts) - 1)
prev = np.clip(idx - 1, 0, len(ts) - 1)
use_prev = (timeline - ts[prev]) <= (ts[idx] - timeline)
cols[cname] = v[np.where(use_prev, prev, idx)]
out[name] = cols
return out, stats
def sql(self, query: str, version=None):
"""DuckDB over the store's own Parquet files — the lakehouse dividend:
because the format is open, a whole second engine comes for free.
Table names in the query = store table names."""
import duckdb
con = duckdb.connect()
for name in self.tables():
st = self.table(name).state(self._ver(version, name))
files = [str(self.dir / "tables" / name / f.path) for f in st.files]
if files:
quoted = ", ".join(f"'{f}'" for f in files)
con.execute(
f'CREATE VIEW "{name}" AS SELECT * FROM '
f"read_parquet([{quoted}])")
return con.execute(query).fetchdf()
# ---- semantic layer (see embeddings.py) --------------------------------
def embed_windows(self, frame_table="frames", window_s=2.0,
frames_per_window=2, model=None, batch=16):
from .embeddings import embed_windows
return embed_windows(self, frame_table, window_s, frames_per_window,
model, batch)
def search(self, text: str, k=10, nprobe=3, merge=True, t0=None, t1=None,
streams=None, method="auto", neg_weight=0.5, min_score=None,
percentile=None, rerank=False, rerank_top=12,
rerank_alpha=0.7):
"""Compositional text search. `text` supports AND / NOT / -term;
`min_score`/`percentile` add a precision floor. See embeddings.search."""
from .embeddings import search
return search(self, text, k=k, nprobe=nprobe, merge=merge, t0=t0,
t1=t1, streams=streams, method=method,
neg_weight=neg_weight, min_score=min_score,
percentile=percentile, rerank=rerank,
rerank_top=rerank_top, rerank_alpha=rerank_alpha)
def search_text(self, text: str, k=10, nprobe=3, **kw):
from .embeddings import search_text
return search_text(self, text, k=k, nprobe=nprobe, **kw)
def search_clip(self, stream: str, t0: int, t1: int, k=10, nprobe=3, **kw):
"""Query-by-example. When the store carries a V-JEPA clip index
the neighbor space is the WORLD MODEL's (video-native, motion-
structured, no text anywhere); otherwise appearance windows.
Measured (bridge4h): V-JEPA beats appearance on action-class
neighbor purity for 'open' (0.51 vs 0.40) and ties elsewhere."""
try:
from .embeddings import _vec_table
import numpy as np
tbl, vecs = _vec_table(self, "vjepa_vectors")
ss = tbl.column("stream").to_pylist()
sa = [int(v) for v in tbl.column("ts").to_pylist()]
sb = [int(v) for v in tbl.column("t1").to_pylist()]
mid = (t0 + t1) // 2
qi = next((i for i in range(len(ss))
if ss[i] == stream and sa[i] <= mid <= sb[i]), None)
if qi is not None:
sc = vecs @ np.asarray(vecs[qi])
sc[qi] = -9
order = np.argsort(-sc)[:k]
hits = [{"stream": ss[i], "t0": sa[i], "t1": sb[i],
"score": float(sc[i])} for i in order]
return hits, {"method": "vjepa-qbe", "k": k}
except Exception:
pass
from .embeddings import search_clip
return search_clip(self, stream, t0, t1, k=k, nprobe=nprobe, **kw)
# ---- context retrieval -------------------------------------------------
def index_context(self, window_s=2.0, stride_s=0.5, label_fraction=1.0,
prune=True, epochs=300, verbose=True, model=None,
frame_stride=1, prompt="scene"):
"""Build the context index end to end.
frames -> per-frame vectors -> VLM captions on `label_fraction` of
windows -> caption-LSA space -> temporal tower -> cellular turnover
-> materialised `context` table.
Cost is dominated by the image encoder, so the knobs that matter are:
model="fast" 3.3x faster encoder, same 1152-d space
frame_stride=N embed every Nth frame (5 Hz video rarely needs all)
label_fraction<1 caption only part of the corpus; the tower covers
the rest
prompt= "scene" or "manipulation" — the caption IS the
index, so it has to use the words a user would
Measured: decode 2.7 ms/frame, encode 90.3 ms/frame (quality) or
27.7 ms/frame (fast). Embedding a large corpus is a batch job measured
in hours; nothing here hides that.
"""
from . import context as C
out = {"frame_vectors": C.embed_frames(self, verbose=verbose,
model=model,
stride=frame_stride)}
windows = C.plan_windows(self, window_s, stride_s)
if label_fraction < 1.0:
# Label a TIME PREFIX, not a random sample: the realistic shape of
# this problem is "we captioned what we had, then more footage
# arrived", and a random sample would quietly hand the tower
# neighbours of every held-out window.
n = max(int(len(windows) * label_fraction), 16)
windows = sorted(windows, key=lambda w: w[1])[:n]
out["captions"] = C.caption_windows(self, windows, verbose=verbose,
prompt=prompt)
_, _, out["train"] = C.train_context(self, window_s, stride_s,
epochs=epochs, verbose=verbose)
if prune:
_, rec = C.prune_context(self, verbose=verbose)
out["prune"] = rec.get("selected")
out["build"] = C.build_context(self, verbose=verbose)
return out
def search_context(self, text: str, k=8, pool=48, deep=0, t0=None,
t1=None, streams=None, rerank=False, verify="async",
**_legacy):
"""THE search: any query, action or not, on any store.
Union recall over every tier the store has (appearance embeddings,
caption words, caption-LSA vectors) proposes candidates; a VLM
reading each clip's start/end frames verifies WHAT IS HAPPENING;
verdicts are cached into the store so hot queries get cheap.
`deep=N` (or rerank=True) re-judges the top N with the larger VLM
over 4 ordered frames. Legacy RRF-only search remains at
elidedb.context.search for stores where a model-free path matters."""
from .verified import search_verified
if rerank and not deep:
deep = 6
if deep and verify == "async":
verify = "sync" # deep judging is an explicit wait
return search_verified(self, text, k=k, pool=pool, deep=deep,
t0=t0, t1=t1, streams=streams, verify=verify)
def search_verified(self, text: str, k=8, pool=48, deep=0):
"""Any query, action or not: union recall proposes, a VLM shown
frames IN TIME ORDER disposes, verdicts are cached into the store.
The only path that can enforce 'the green object is the one being
moved' or '...and close it'. See elidedb.verified."""
from .verified import search_verified
return search_verified(self, text, k=k, pool=pool, deep=deep)
def search_sharp(self, text: str, k=10, shortlist=48):
"""Text search at teacher quality, student price: the student ranks
every window (~1 ms), the teacher re-scores only the shortlist, and
every teacher vector is cached into the store — quality accumulates
where users query (database cracking). See elidedb.cracked."""
from .cracked import search_sharp
return search_sharp(self, text, k=k, shortlist=shortlist)
def explain(self, t0: int, t1: int, stream=None):
"""The teacher's own description of what happens in a window."""
from .context import explain
return explain(self, t0, t1, stream=stream)
_NULL = None
def _fold(dst, src):
"""Accumulate one QueryStats into another.
corpus_bytes takes a MAX, not a sum: it is a denominator, and adding
denominators across calls would inflate it until the elision figure
became meaningless. The measure() block seeds it with the whole
store, which is the largest and the correct one; a caller's own
stats keeps whatever per-table denominator it had.
"""
if dst is None:
return
dst.files_total += src.files_total
dst.files_touched += src.files_touched
dst.bytes_touched += src.bytes_touched
dst.rows_returned += src.rows_returned
dst.corpus_bytes = max(dst.corpus_bytes, src.corpus_bytes)