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Browse files- app.py +719 -0
- requirements.txt +12 -0
app.py
ADDED
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@@ -0,0 +1,719 @@
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| 1 |
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# -*- coding: utf-8 -*-
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| 2 |
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"""app.ipynb
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| 4 |
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Automatically generated by Colab.
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Original file is located at
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| 7 |
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https://colab.research.google.com/drive/1umH6P4k0xEUEZsizNZfLzFttGrqivmwq
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"""
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import pandas as pd
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import numpy as np
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import matplotlib.pyplot as plt
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import seaborn as sns
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from sklearn.preprocessing import StandardScaler
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from sklearn.decomposition import PCA
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from xgboost import XGBClassifier
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from sklearn.metrics import accuracy_score, precision_score, recall_score, f1_score, confusion_matrix, classification_report
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from sklearn.model_selection import train_test_split
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import warnings
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warnings.filterwarnings("ignore")
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df = pd.read_csv("/content/diabetes_prediction_dataset.csv")
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df.head(10)
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df.describe()
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df.info()
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df.isnull().sum()
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print(df.duplicated().sum())
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df = df.drop_duplicates()
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print("________Removed Duplicate________")
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print(df.duplicated().sum())
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#Function to add counts on bars
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def add_counts(ax):
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for p in ax.patches:
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ax.annotate(f'{int(p.get_height())}', (p.get_x()+p.get_width()/2., p.get_height()),
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| 42 |
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ha ='center', va='center', fontsize=10, color='black', xytext=(0,5), textcoords='offset points')
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| 43 |
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#set up the matplotlib figure
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| 45 |
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fig, axes = plt.subplots(3, 2, figsize=(15, 15))
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#Plot gender grouped by dibetes
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| 48 |
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ax = sns.countplot(ax=axes[0,0], x='gender', hue='diabetes', data=df)
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| 49 |
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ax.set_title('Gender Grouped by Diabetes')
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| 50 |
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add_counts(ax)
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+
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#Plot hypertension groupef by diabetes
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| 53 |
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ax = sns.countplot(ax=axes[0,1], x='hypertension', hue='diabetes', data=df)
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| 54 |
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ax.set_title('Hypertension Grouped by Diabetes')
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| 55 |
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add_counts(ax)
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| 56 |
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| 57 |
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#Plot heart disease grouped by diabetes
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| 58 |
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ax = sns.countplot(ax=axes[1,0], x='heart_disease', hue='diabetes', data=df)
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| 59 |
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ax.set_title('Heart Disease Grouped by Diabetes')
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| 60 |
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add_counts(ax)
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| 61 |
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| 62 |
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#Plot smoking history groupde by diabetes
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| 63 |
+
ax = sns.countplot(ax=axes[1,1], x='smoking_history', hue='diabetes', data=df)
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| 64 |
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ax.set_title('Smoking History Grouped by Diabetes')
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| 65 |
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add_counts(ax)
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| 66 |
+
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| 67 |
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# Plot diabetes
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| 68 |
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ax = sns.countplot(ax=axes[2, 0], x='diabetes', data=df)
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| 69 |
+
axes[2, 0].set_title('Diabetes Count')
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| 70 |
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add_counts(ax)
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| 71 |
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| 72 |
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# Create pie plot for diabetes
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| 73 |
+
diabetes_counts = df['diabetes'].value_counts()
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| 74 |
+
axes[2, 1].pie(diabetes_counts, labels=diabetes_counts.index, autopct='%1.1f%%', startangle=90)
|
| 75 |
+
axes[2, 1].set_title('Diabetes Distribution')
|
| 76 |
+
axes[2, 1].axis('equal') # Equal aspect ratio ensures that pie is drawn as a circle.
|
| 77 |
+
axes[2, 1].legend(title='Diabetes:', loc='upper right')
|
| 78 |
+
# Adjust the layout
|
| 79 |
+
plt.tight_layout()
|
| 80 |
+
|
| 81 |
+
# Show the plots
|
| 82 |
+
plt.show()
|
| 83 |
+
|
| 84 |
+
#Calculate minimum, maximum, and average age
|
| 85 |
+
min_age = df['age'].min()
|
| 86 |
+
max_age = df['age'].max()
|
| 87 |
+
avg_age = df['age'].mean()
|
| 88 |
+
|
| 89 |
+
#Count of individuals with and without diabetes
|
| 90 |
+
diabetes_counts = df['diabetes'].value_counts()
|
| 91 |
+
|
| 92 |
+
#Group by dibetes status and calculate min and max ages
|
| 93 |
+
grouped_ages = df.groupby('diabetes')['age'].agg(['min', 'max'])
|
| 94 |
+
|
| 95 |
+
#Print the results
|
| 96 |
+
print("Minimum Age:", min_age)
|
| 97 |
+
print("Maximum Age:", max_age)
|
| 98 |
+
print("Average Age:", avg_age)
|
| 99 |
+
print(diabetes_counts)
|
| 100 |
+
print("Age Statistics by Diabetes Status:")
|
| 101 |
+
print(grouped_ages)
|
| 102 |
+
|
| 103 |
+
# Plotting
|
| 104 |
+
fig, ax = plt.subplots(1, 2, figsize=(14, 6))
|
| 105 |
+
|
| 106 |
+
# Plot for overall min, max, and average age
|
| 107 |
+
bars = ax[0].bar(['Min Age', 'Max Age', 'Avg Age'], [min_age, max_age, avg_age], color=['blue', 'red', 'green'])
|
| 108 |
+
ax[0].set_title('Overall Age Statistics')
|
| 109 |
+
ax[0].set_ylabel('Age')
|
| 110 |
+
|
| 111 |
+
# Annotate bars with their values
|
| 112 |
+
for bar in bars:
|
| 113 |
+
yval = bar.get_height()
|
| 114 |
+
ax[0].text(bar.get_x() + bar.get_width()/2, yval, round(yval, 2), va='bottom') # Add text to the top of the bars
|
| 115 |
+
|
| 116 |
+
# Plot for min and max ages grouped by diabetes status
|
| 117 |
+
grouped_bars = grouped_ages.plot(kind='bar', ax=ax[1])
|
| 118 |
+
ax[1].set_title('Age Statistics by Diabetes Status')
|
| 119 |
+
ax[1].set_ylabel('Age')
|
| 120 |
+
|
| 121 |
+
# Annotate bars with their values
|
| 122 |
+
for p in grouped_bars.patches:
|
| 123 |
+
grouped_bars.annotate(str(p.get_height()), (p.get_x() * 1.005, p.get_height() * 1.005))
|
| 124 |
+
|
| 125 |
+
plt.tight_layout()
|
| 126 |
+
plt.show()
|
| 127 |
+
|
| 128 |
+
cross_table = pd.crosstab(df['diabetes'], df['smoking_history'])
|
| 129 |
+
|
| 130 |
+
# Create subplots
|
| 131 |
+
fig, ax = plt.subplots(1, 2, figsize=(20, 8))
|
| 132 |
+
|
| 133 |
+
# Plotting the cross table as a heatmap
|
| 134 |
+
sns.heatmap(cross_table, cmap='YlOrRd', annot=True, fmt='d', linewidths=0.5, linecolor='black', ax=ax[0])
|
| 135 |
+
ax[0].set_title('Diabetes and Smoking History (Heatmap)')
|
| 136 |
+
ax[0].set_xlabel('Smoking History')
|
| 137 |
+
ax[0].set_ylabel('Diabetes')
|
| 138 |
+
|
| 139 |
+
# Plotting the cross table with separate bars for smoking history
|
| 140 |
+
cross_table.plot(kind='bar', stacked=False, ax=ax[1], color=plt.cm.Paired.colors)
|
| 141 |
+
ax[1].set_title('Diabetes and Smoking History (Bar Plot)')
|
| 142 |
+
ax[1].set_xlabel('Diabetes')
|
| 143 |
+
ax[1].set_ylabel('Count')
|
| 144 |
+
ax[1].legend(title='Smoking History', bbox_to_anchor=(1.05, 1), loc='upper left')
|
| 145 |
+
|
| 146 |
+
# Annotate bars with their values
|
| 147 |
+
for container in ax[1].containers:
|
| 148 |
+
ax[1].bar_label(container)
|
| 149 |
+
|
| 150 |
+
plt.tight_layout()
|
| 151 |
+
plt.show()
|
| 152 |
+
|
| 153 |
+
#incode the data
|
| 154 |
+
|
| 155 |
+
from sklearn.preprocessing import LabelEncoder
|
| 156 |
+
le = LabelEncoder()
|
| 157 |
+
df['gender'] = le.fit_transform(df['gender'])
|
| 158 |
+
df['smoking_history'] = le.fit_transform(df['smoking_history'])
|
| 159 |
+
df.head()
|
| 160 |
+
|
| 161 |
+
##Assume df is your datafram
|
| 162 |
+
|
| 163 |
+
#Selecting features and target variable
|
| 164 |
+
features = ['gender', 'age', 'hypertension', 'heart_disease', 'smoking_history', 'bmi', 'HbA1c_level', 'blood_glucose_level']
|
| 165 |
+
X= df[features]
|
| 166 |
+
Y= df['diabetes']
|
| 167 |
+
|
| 168 |
+
# Standardizing the features
|
| 169 |
+
scaler = StandardScaler()
|
| 170 |
+
X_scaled = scaler.fit_transform(X)
|
| 171 |
+
|
| 172 |
+
# Applying PCA
|
| 173 |
+
pca = PCA()
|
| 174 |
+
X_pca = pca.fit_transform(X_scaled)
|
| 175 |
+
|
| 176 |
+
# Plotting the cumulative explained variance
|
| 177 |
+
plt.figure(figsize=(10, 6))
|
| 178 |
+
plt.plot(range(1, len(pca.explained_variance_ratio_) + 1),
|
| 179 |
+
pca.explained_variance_ratio_.cumsum(), marker='o', linestyle='--')
|
| 180 |
+
plt.title('Explained Variance by Number of Principal Components')
|
| 181 |
+
plt.xlabel('Number of Principal Components')
|
| 182 |
+
plt.ylabel('Cumulative Explained Variance')
|
| 183 |
+
plt.grid()
|
| 184 |
+
|
| 185 |
+
# Find the index of the maximum cumulative explained variance
|
| 186 |
+
max_index = pca.explained_variance_ratio_.cumsum().argmax()
|
| 187 |
+
|
| 188 |
+
# Annotate the point with the highest cumulative explained variance
|
| 189 |
+
plt.annotate(f'Max: PC {max_index + 1}',
|
| 190 |
+
xy=(max_index + 1, pca.explained_variance_ratio_.cumsum()[max_index]),
|
| 191 |
+
xytext=(max_index + 2, pca.explained_variance_ratio_.cumsum()[max_index] - 0.05),
|
| 192 |
+
arrowprops=dict(facecolor='black', arrowstyle='->', color='black'))
|
| 193 |
+
|
| 194 |
+
plt.show()
|
| 195 |
+
|
| 196 |
+
# Printing explained variance ratios
|
| 197 |
+
for i, ratio in enumerate(pca.explained_variance_ratio_.cumsum()):
|
| 198 |
+
print(f'Principal Component {i+1}: {ratio:.4f} cumulative explained variance')
|
| 199 |
+
|
| 200 |
+
# Choose the number of components that explain most of the variance
|
| 201 |
+
n_components = max_index + 1
|
| 202 |
+
|
| 203 |
+
# Applying PCA with the optimal number of components
|
| 204 |
+
pca = PCA(n_components=n_components)
|
| 205 |
+
X_pca = pca.fit_transform(X_scaled)
|
| 206 |
+
|
| 207 |
+
#Splitting the date into traing and testing sets
|
| 208 |
+
X_train, X_test, y_train, y_test = train_test_split(X_pca, Y, test_size=0.2, random_state=42)
|
| 209 |
+
|
| 210 |
+
#Initializing and training the XGBoost model
|
| 211 |
+
xgb_model = XGBClassifier()
|
| 212 |
+
xgb_model.fit(X_train, y_train)
|
| 213 |
+
|
| 214 |
+
#Making predictions on the test set
|
| 215 |
+
y_pred = xgb_model.predict(X_test)
|
| 216 |
+
|
| 217 |
+
# Evaluating the model
|
| 218 |
+
accuracy = accuracy_score(y_test, y_pred)
|
| 219 |
+
print(f'XGBoost Accuracy: {accuracy:.4f}')
|
| 220 |
+
print(f'XGBoost Classification Report:\n{classification_report(y_test, y_pred)}')
|
| 221 |
+
|
| 222 |
+
# Compute the confusion matrix
|
| 223 |
+
conf_matrix = confusion_matrix(y_test, y_pred)
|
| 224 |
+
|
| 225 |
+
# Plotting the confusion matrix
|
| 226 |
+
plt.figure(figsize=(8, 6))
|
| 227 |
+
sns.heatmap(conf_matrix, annot=True, fmt='d', cmap='Blues', xticklabels=['No Diabetes', 'Diabetes'], yticklabels=['No Diabetes', 'Diabetes'])
|
| 228 |
+
plt.title('Confusion Matrix')
|
| 229 |
+
plt.xlabel('Predicted')
|
| 230 |
+
plt.ylabel('Actual')
|
| 231 |
+
plt.show()
|
| 232 |
+
|
| 233 |
+
import pickle
|
| 234 |
+
|
| 235 |
+
# Save the model
|
| 236 |
+
with open('Diabetes_model.pkl', 'wb') as f:
|
| 237 |
+
pickle.dump(xgb_model, f)
|
| 238 |
+
|
| 239 |
+
# Prepare custom data
|
| 240 |
+
custom_data = [
|
| 241 |
+
[1, 45, 0, 0, 1, 25.6, 6.5, 110],
|
| 242 |
+
[0, 35, 1, 0, 0, 28.2, 7.2, 130],
|
| 243 |
+
[1, 55, 1, 1, 1, 31.4, 8.0, 150],
|
| 244 |
+
[0, 42, 0, 1, 0, 26.9, 7.0, 120],
|
| 245 |
+
[1, 50, 1, 0, 1, 29.7, 7.8, 140]
|
| 246 |
+
]
|
| 247 |
+
|
| 248 |
+
# Convert to pandas DataFrame
|
| 249 |
+
custom_df = pd.DataFrame(custom_data, columns=features)
|
| 250 |
+
|
| 251 |
+
# Standardize the custom data
|
| 252 |
+
custom_X = scaler.transform(custom_df[features])
|
| 253 |
+
|
| 254 |
+
# Apply PCA transformation
|
| 255 |
+
custom_X_pca = pca.transform(custom_X)
|
| 256 |
+
|
| 257 |
+
# Make predictions using the trained XGBoost model
|
| 258 |
+
custom_predictions = xgb_model.predict(custom_X_pca)
|
| 259 |
+
|
| 260 |
+
# Print the predictions
|
| 261 |
+
for i, pred in enumerate(custom_predictions):
|
| 262 |
+
if pred == 0:
|
| 263 |
+
print(f"Person {i+1} is not predicted to have diabetes.")
|
| 264 |
+
else:
|
| 265 |
+
print(f"Person {i+1} is predicted to have diabetes.")
|
| 266 |
+
|
| 267 |
+
import xgboost as xgb
|
| 268 |
+
from sklearn.model_selection import train_test_split
|
| 269 |
+
from sklearn.metrics import accuracy_score
|
| 270 |
+
|
| 271 |
+
# Step 1: Split the data
|
| 272 |
+
X_train, X_test, y_train, y_test = train_test_split(X, Y, test_size=0.2, random_state=42)
|
| 273 |
+
|
| 274 |
+
# Step 2: Instantiate the classifier
|
| 275 |
+
xgb_clf = xgb.XGBClassifier(use_label_encoder=False, eval_metric='logloss')
|
| 276 |
+
|
| 277 |
+
# Step 3: Train the model
|
| 278 |
+
xgb_clf.fit(X_train, y_train)
|
| 279 |
+
|
| 280 |
+
# Step 4: Make predictions
|
| 281 |
+
y_pred = xgb_clf.predict(X_test)
|
| 282 |
+
|
| 283 |
+
# Step 5: Evaluate the model
|
| 284 |
+
accuracy = accuracy_score(y_test, y_pred)
|
| 285 |
+
print(f"Model accuracy: {accuracy:.2f}")
|
| 286 |
+
|
| 287 |
+
# Compute the confusion matrix
|
| 288 |
+
conf_matrix = confusion_matrix(y_test, y_pred)
|
| 289 |
+
|
| 290 |
+
# Plotting the confusion matrix
|
| 291 |
+
plt.figure(figsize=(8, 6))
|
| 292 |
+
sns.heatmap(conf_matrix, annot=True, fmt='d', cmap='Blues', xticklabels=['No Hypertension', 'Hypertension'], yticklabels=['No Hypertension', 'Hypertension'])
|
| 293 |
+
plt.title('Confusion Matrix')
|
| 294 |
+
plt.xlabel('Predicted')
|
| 295 |
+
plt.ylabel('Actual')
|
| 296 |
+
plt.show()
|
| 297 |
+
|
| 298 |
+
import pickle
|
| 299 |
+
|
| 300 |
+
# Save the model
|
| 301 |
+
with open('hypertension_model.pkl', 'wb') as f:
|
| 302 |
+
pickle.dump(xgb_model, f)
|
| 303 |
+
|
| 304 |
+
features = ['gender', 'age', 'diabetes', 'heart_disease', 'smoking_history', 'bmi', 'HbA1c_level', 'blood_glucose_level']
|
| 305 |
+
customs_data = [
|
| 306 |
+
[1, 45, 0, 0, 1, 25.6, 6.5, 110],
|
| 307 |
+
[0, 35, 1, 0, 0, 28.2, 7.2, 130],
|
| 308 |
+
[1, 55, 1, 1, 1, 31.4, 8.0, 150],
|
| 309 |
+
[0, 42, 1, 1, 0, 26.9, 7.0, 120],
|
| 310 |
+
[1, 50, 1, 0, 1, 29.7, 7.8, 140]
|
| 311 |
+
]
|
| 312 |
+
|
| 313 |
+
custom_df = pd.DataFrame(customs_data, columns=features)
|
| 314 |
+
custom_predictions = xgb_model.predict(custom_df)
|
| 315 |
+
|
| 316 |
+
for i, pred in enumerate(custom_predictions):
|
| 317 |
+
if pred == 0:
|
| 318 |
+
print(f"Person {i+1} is not predicted to have hypertension.")
|
| 319 |
+
else:
|
| 320 |
+
print(f"Person {i+1} is predicted to have hypertension.")
|
| 321 |
+
|
| 322 |
+
import numpy as np
|
| 323 |
+
import pandas as pd
|
| 324 |
+
import matplotlib.pyplot as plt
|
| 325 |
+
import seaborn as sns
|
| 326 |
+
from IPython.display import display
|
| 327 |
+
import cv2
|
| 328 |
+
import io
|
| 329 |
+
from PIL import Image
|
| 330 |
+
from sklearn.model_selection import train_test_split
|
| 331 |
+
from sklearn.preprocessing import MinMaxScaler
|
| 332 |
+
import tensorflow as tf
|
| 333 |
+
|
| 334 |
+
print(tf.__version__)
|
| 335 |
+
|
| 336 |
+
import kagglehub
|
| 337 |
+
|
| 338 |
+
# Download latest version
|
| 339 |
+
path = kagglehub.dataset_download("borhanitrash/alzheimer-mri-disease-classification-dataset")
|
| 340 |
+
|
| 341 |
+
print("Path to dataset files:", path)
|
| 342 |
+
|
| 343 |
+
train ='/content/train-00000-of-00001-c08a401c53fe5312.parquet'
|
| 344 |
+
test = '/content/test-00000-of-00001-44110b9df98c5585.parquet'
|
| 345 |
+
categorias = {
|
| 346 |
+
0: 'Mild_Demented',
|
| 347 |
+
1: 'Moderate_Demented',
|
| 348 |
+
2: 'Non_Demented',
|
| 349 |
+
3: 'Very_Mild_Demented'
|
| 350 |
+
}
|
| 351 |
+
data_train = pd.read_parquet(train)
|
| 352 |
+
data_test = pd.read_parquet(test)
|
| 353 |
+
data_train.head()
|
| 354 |
+
|
| 355 |
+
img_dict = data_train['image'][0]
|
| 356 |
+
byte_string = img_dict['bytes']
|
| 357 |
+
nparr = np.frombuffer(byte_string, np.uint8)
|
| 358 |
+
img = cv2.imdecode(nparr, cv2.IMREAD_COLOR)
|
| 359 |
+
|
| 360 |
+
image = Image.open(io.BytesIO(byte_string))
|
| 361 |
+
display(image)
|
| 362 |
+
|
| 363 |
+
def extraccion_y_transformacion(images_set):
|
| 364 |
+
et_list_images=[]
|
| 365 |
+
images_bytes = images_set['image']
|
| 366 |
+
for img_dict in images_bytes:
|
| 367 |
+
byte_string = img_dict['bytes']
|
| 368 |
+
nparr = np.frombuffer(byte_string, np.uint8)
|
| 369 |
+
img = cv2.imdecode(nparr, cv2.IMREAD_COLOR)
|
| 370 |
+
et_list_images.append(img)
|
| 371 |
+
return et_list_images
|
| 372 |
+
|
| 373 |
+
def visualizar_imagenes(image_set, categorias, limit=5):
|
| 374 |
+
fig, axes = plt.subplots(1, limit, figsize=(10, 5))
|
| 375 |
+
image_bytes = image_set['image']
|
| 376 |
+
|
| 377 |
+
for i, (ax, row) in enumerate(zip(axes, image_set.iterrows())):
|
| 378 |
+
img_dict = row[1]['image']
|
| 379 |
+
label = row[1]['label']
|
| 380 |
+
name = categorias[label]
|
| 381 |
+
|
| 382 |
+
byte_string = img_dict['bytes']
|
| 383 |
+
image = Image.open(io.BytesIO(byte_string))
|
| 384 |
+
|
| 385 |
+
ax.imshow(image, cmap='gray')
|
| 386 |
+
ax.set_title(name)
|
| 387 |
+
ax.axis('off')
|
| 388 |
+
|
| 389 |
+
if i + 1 == limit:
|
| 390 |
+
break
|
| 391 |
+
|
| 392 |
+
plt.tight_layout()
|
| 393 |
+
plt.show()
|
| 394 |
+
|
| 395 |
+
train_transformado = extraccion_y_transformacion(data_train)
|
| 396 |
+
test_transformado = extraccion_y_transformacion(data_test)
|
| 397 |
+
print(train_transformado[:1])
|
| 398 |
+
|
| 399 |
+
visualizar_imagenes(data_train, categorias, limit=5)
|
| 400 |
+
|
| 401 |
+
y_test = []
|
| 402 |
+
for label in data_test['label']:
|
| 403 |
+
y_test.append(label)
|
| 404 |
+
|
| 405 |
+
y_train = []
|
| 406 |
+
for label in data_train['label']:
|
| 407 |
+
y_train.append(label)
|
| 408 |
+
|
| 409 |
+
y_train = np.array(y_train)
|
| 410 |
+
y_test = np.array(y_test)
|
| 411 |
+
|
| 412 |
+
unique, counts = np.unique(y_train, return_counts=True)
|
| 413 |
+
plt.bar(unique, counts)
|
| 414 |
+
plt.xlabel('Clases')
|
| 415 |
+
plt.ylabel('Cantidad')
|
| 416 |
+
plt.title('Distribucion de clases')
|
| 417 |
+
plt.xticks(unique)
|
| 418 |
+
plt.show()
|
| 419 |
+
|
| 420 |
+
y_train = tf.one_hot(y_train.astype(np.int32), depth=4)
|
| 421 |
+
y_test = tf.one_hot(y_test.astype(np.int32), depth=4)
|
| 422 |
+
y_train
|
| 423 |
+
|
| 424 |
+
train_transformado = np.array(train_transformado)/255
|
| 425 |
+
test_transformado = np.array(test_transformado)/255
|
| 426 |
+
|
| 427 |
+
train_transformado = [np.expand_dims(img, axis=-1) for img in train_transformado] # agregar el canal de escala de grises
|
| 428 |
+
test_transformado = [np.expand_dims(img, axis=-1) for img in test_transformado]
|
| 429 |
+
#test_transformado = [np.expand_dims(img, axis=-1) for img in test_transformado]
|
| 430 |
+
train_transformado = np.array(train_transformado)
|
| 431 |
+
test_transformado = np.array(test_transformado)
|
| 432 |
+
train_transformado[0].shape
|
| 433 |
+
|
| 434 |
+
train_transformado.shape
|
| 435 |
+
|
| 436 |
+
class MinMaxScaler3D(MinMaxScaler):
|
| 437 |
+
def fit_transform(self, X, y=None):
|
| 438 |
+
x = np.reshape(X, newshape=(X.shape[0]*X.shape[1], X.shape[2]))
|
| 439 |
+
return np.reshape(super().fit_transform(x, y=y), newshape=X.shape)
|
| 440 |
+
|
| 441 |
+
scaler = MinMaxScaler3D()
|
| 442 |
+
train_scaled = [scaler.fit_transform(X=img) for img in train_transformado]
|
| 443 |
+
train_scaled = np.array(train_scaled)
|
| 444 |
+
test_scaled = [scaler.fit_transform(X=img) for img in test_transformado]
|
| 445 |
+
test_scaled = np.array(test_scaled)
|
| 446 |
+
|
| 447 |
+
train_scaled.shape
|
| 448 |
+
|
| 449 |
+
from tensorflow import keras
|
| 450 |
+
from tensorflow.keras.preprocessing.image import ImageDataGenerator
|
| 451 |
+
from tensorflow.keras import layers
|
| 452 |
+
from tensorflow.keras import Sequential, initializers
|
| 453 |
+
from sklearn.preprocessing import StandardScaler
|
| 454 |
+
from tensorflow.keras.optimizers import Adam
|
| 455 |
+
|
| 456 |
+
#optimizer = Adam()
|
| 457 |
+
optimizer = Adam(
|
| 458 |
+
learning_rate=0.001, # Tasa de aprendizaje
|
| 459 |
+
beta_1=0.9, # Decay rate del primer momento
|
| 460 |
+
beta_2=0.999, # Decay rate del segundo momento
|
| 461 |
+
epsilon=1e-07 # Término de suavizado
|
| 462 |
+
)
|
| 463 |
+
|
| 464 |
+
model = Sequential([
|
| 465 |
+
layers.Input(shape=(128,128,1)),
|
| 466 |
+
|
| 467 |
+
layers.Conv2D(64, kernel_size=(2,2), activation='relu',kernel_initializer = initializers.HeNormal(seed=42), padding='same'),
|
| 468 |
+
#layers.BatchNormalization(),
|
| 469 |
+
layers.MaxPooling2D(pool_size=(2,2)),
|
| 470 |
+
#layers.Dropout(0.25),
|
| 471 |
+
|
| 472 |
+
layers.Conv2D(64,kernel_size=(2,2), activation='relu', kernel_initializer = initializers.HeNormal(seed=42), padding='same'),
|
| 473 |
+
#layers.BatchNormalization(),
|
| 474 |
+
layers.MaxPooling2D(pool_size=(2,2)),
|
| 475 |
+
#layers.Dropout(0.25),
|
| 476 |
+
|
| 477 |
+
layers.Conv2D(128, kernel_size=(3,3), activation='relu', kernel_initializer = initializers.HeNormal(seed=42), padding='same'),
|
| 478 |
+
#layers.BatchNormalization(),
|
| 479 |
+
layers.MaxPooling2D(pool_size=(2,2)),
|
| 480 |
+
#layers.Dropout(0.25),
|
| 481 |
+
|
| 482 |
+
layers.Flatten(),
|
| 483 |
+
layers.Dropout(0.25),
|
| 484 |
+
layers.Dense(256, activation='relu'),
|
| 485 |
+
layers.Dense(len(categorias), activation='softmax')
|
| 486 |
+
])
|
| 487 |
+
|
| 488 |
+
model.compile(optimizer=optimizer, loss='categorical_crossentropy', metrics=["accuracy"])
|
| 489 |
+
|
| 490 |
+
model = Sequential([
|
| 491 |
+
Conv2D(32, (3,3), activation='relu', input_shape=(128, 128, 3)),
|
| 492 |
+
...
|
| 493 |
+
])
|
| 494 |
+
|
| 495 |
+
|
| 496 |
+
class myCallback(tf.keras.callbacks.Callback):
|
| 497 |
+
def on_epoch_end(self, epoch, logs={}):
|
| 498 |
+
if (logs.get('accuracy') > 0.995):
|
| 499 |
+
print("\nReached 99.5% accuracy so cancelling training!")
|
| 500 |
+
self.model.stop_training = True
|
| 501 |
+
|
| 502 |
+
callbacks = myCallback()
|
| 503 |
+
history = model.fit(
|
| 504 |
+
train_scaled,
|
| 505 |
+
y_train,
|
| 506 |
+
batch_size=10,
|
| 507 |
+
epochs=20,
|
| 508 |
+
validation_split=0.1,
|
| 509 |
+
callbacks=[callbacks]
|
| 510 |
+
)
|
| 511 |
+
|
| 512 |
+
plt.plot(history.history['loss'], label='Train loss')
|
| 513 |
+
plt.plot(history.history['val_loss'], label='Validation loss')
|
| 514 |
+
plt.plot(history.history['accuracy'], label='Train accuracy')
|
| 515 |
+
plt.plot(history.history['val_accuracy'], label='Validation accuracy')
|
| 516 |
+
plt.legend()
|
| 517 |
+
plt.title('Loss and accuracy (also validation) per Epoch')
|
| 518 |
+
plt.show()
|
| 519 |
+
|
| 520 |
+
history.model.layers
|
| 521 |
+
|
| 522 |
+
w, b = history.model.layers[0].get_weights()
|
| 523 |
+
|
| 524 |
+
b.shape
|
| 525 |
+
|
| 526 |
+
test_loss, test_acc = model.evaluate(test_scaled, y_test, verbose=2)
|
| 527 |
+
print(f'Test accuracy: {test_acc}'
|
| 528 |
+
|
| 529 |
+
predictions = model.predict(test_scaled)
|
| 530 |
+
|
| 531 |
+
predictions[0]
|
| 532 |
+
|
| 533 |
+
np.argmax(predictions[0])
|
| 534 |
+
|
| 535 |
+
data_test['label'][0]
|
| 536 |
+
|
| 537 |
+
from sklearn.metrics import classification_report
|
| 538 |
+
predicted_classes = np.argmax(predictions, axis=1)
|
| 539 |
+
true_classes = np.argmax(y_test, axis=1)
|
| 540 |
+
report = classification_report(true_classes, predicted_classes)
|
| 541 |
+
print(report)
|
| 542 |
+
|
| 543 |
+
def plot_image(i, predictions_array, true_label, img):
|
| 544 |
+
predictions_array, true_label, img = predictions_array, true_label[i], img[i]
|
| 545 |
+
plt.grid(False)
|
| 546 |
+
plt.xticks([])
|
| 547 |
+
plt.yticks([])
|
| 548 |
+
|
| 549 |
+
plt.imshow(img, cmap=plt.cm.binary)
|
| 550 |
+
|
| 551 |
+
predicted_label = np.argmax(predictions_array)
|
| 552 |
+
if predicted_label == true_label:
|
| 553 |
+
color = 'blue'
|
| 554 |
+
else:
|
| 555 |
+
color = 'red'
|
| 556 |
+
|
| 557 |
+
plt.xlabel("{} {:2.0f}% ({})".format(categorias[predicted_label],
|
| 558 |
+
100*np.max(predictions_array),
|
| 559 |
+
categorias[true_label]),
|
| 560 |
+
color=color)
|
| 561 |
+
|
| 562 |
+
def plot_value_array(i, predictions_array, true_label):
|
| 563 |
+
predictions_array, true_label = predictions_array, true_label[i]
|
| 564 |
+
plt.grid(False)
|
| 565 |
+
plt.xticks(range(4))
|
| 566 |
+
plt.yticks([])
|
| 567 |
+
thisplot = plt.bar(range(4), predictions_array, color="#777777")
|
| 568 |
+
plt.ylim([0, 1])
|
| 569 |
+
predicted_label = np.argmax(predictions_array)
|
| 570 |
+
|
| 571 |
+
thisplot[predicted_label].set_color('red')
|
| 572 |
+
thisplot[true_label].set_color('blue')
|
| 573 |
+
|
| 574 |
+
i = 0
|
| 575 |
+
plt.figure(figsize=(6,3))
|
| 576 |
+
plt.subplot(1,2,1)
|
| 577 |
+
plot_image(i, predictions[i], np.argmax(y_test, axis=1), test_scaled)
|
| 578 |
+
plt.subplot(1,2,2)
|
| 579 |
+
plot_value_array(i, predictions[i], np.argmax(y_test, axis=1))
|
| 580 |
+
plt.show()
|
| 581 |
+
|
| 582 |
+
i = 8
|
| 583 |
+
plt.figure(figsize=(6,3))
|
| 584 |
+
plt.subplot(1,2,1)
|
| 585 |
+
plot_image(i, predictions[i], np.argmax(y_test, axis=1), test_scaled)
|
| 586 |
+
plt.subplot(1,2,2)
|
| 587 |
+
plot_value_array(i, predictions[i], np.argmax(y_test, axis=1))
|
| 588 |
+
plt.show()
|
| 589 |
+
|
| 590 |
+
num_rows = 4
|
| 591 |
+
num_cols = 3
|
| 592 |
+
num_images = num_rows*num_cols
|
| 593 |
+
plt.figure(figsize=(2*2*num_cols, 2*num_rows))
|
| 594 |
+
for i in range(num_images):
|
| 595 |
+
plt.subplot(num_rows, 2*num_cols, 2*i+1)
|
| 596 |
+
plot_image(i, predictions[i], np.argmax(y_test, axis=1), test_scaled)
|
| 597 |
+
plt.subplot(num_rows, 2*num_cols, 2*i+2)
|
| 598 |
+
plot_value_array(i, predictions[i], np.argmax(y_test, axis=1))
|
| 599 |
+
plt.tight_layout()
|
| 600 |
+
plt.show()
|
| 601 |
+
|
| 602 |
+
|
| 603 |
+
|
| 604 |
+
|
| 605 |
+
|
| 606 |
+
|
| 607 |
+
|
| 608 |
+
|
| 609 |
+
|
| 610 |
+
|
| 611 |
+
|
| 612 |
+
!pip install streamlit ngrok
|
| 613 |
+
|
| 614 |
+
with open("app.py", "w") as file:
|
| 615 |
+
file.write("""
|
| 616 |
+
# Streamlit Multi-Page App for Hypertension and Diabetes Prediction
|
| 617 |
+
|
| 618 |
+
import streamlit as st
|
| 619 |
+
from streamlit_option_menu import option_menu
|
| 620 |
+
import pandas as pd
|
| 621 |
+
import numpy as np
|
| 622 |
+
|
| 623 |
+
# Placeholder models (replace with actual models trained in the notebook)
|
| 624 |
+
class PlaceholderModel:
|
| 625 |
+
def predict(self, X):
|
| 626 |
+
return np.random.choice([0, 1], size=(len(X),))
|
| 627 |
+
|
| 628 |
+
diabetes_model = PlaceholderModel()
|
| 629 |
+
hypertension_model = PlaceholderModel()
|
| 630 |
+
|
| 631 |
+
# Streamlit App Pages
|
| 632 |
+
st.set_page_config(page_title="Health Prediction App", layout="wide")
|
| 633 |
+
|
| 634 |
+
# Sidebar Navigation
|
| 635 |
+
with st.sidebar:
|
| 636 |
+
selected = option_menu(
|
| 637 |
+
"Navigation", ["Home", "Hypertension", "Diabetes"],
|
| 638 |
+
icons=["house", "activity", "heart"],
|
| 639 |
+
menu_icon="menu-app", default_index=0
|
| 640 |
+
)
|
| 641 |
+
|
| 642 |
+
if selected == "Home":
|
| 643 |
+
st.title("Health Prediction App")
|
| 644 |
+
st.write("Select the prediction model from the sidebar to get started.")
|
| 645 |
+
|
| 646 |
+
elif selected == "Hypertension":
|
| 647 |
+
st.title("Hypertension Prediction")
|
| 648 |
+
|
| 649 |
+
# Input form for Hypertension
|
| 650 |
+
age = st.number_input("Age", min_value=0, max_value=120, value=30)
|
| 651 |
+
systolic_bp = st.number_input("Systolic Blood Pressure", min_value=50, max_value=250, value=120)
|
| 652 |
+
diastolic_bp = st.number_input("Diastolic Blood Pressure", min_value=30, max_value=150, value=80)
|
| 653 |
+
cholesterol = st.number_input("Cholesterol Level", min_value=50, max_value=400, value=200)
|
| 654 |
+
smoking = st.selectbox("Smoking Status", ("Non-Smoker", "Former Smoker", "Current Smoker"))
|
| 655 |
+
activity = st.selectbox("Physical Activity Level", ("Low", "Moderate", "High"))
|
| 656 |
+
|
| 657 |
+
smoking_encoded = {"Non-Smoker": 0, "Former Smoker": 1, "Current Smoker": 2}[smoking]
|
| 658 |
+
activity_encoded = {"Low": 0, "Moderate": 1, "High": 2}[activity]
|
| 659 |
+
|
| 660 |
+
data = pd.DataFrame({
|
| 661 |
+
'Age': [age],
|
| 662 |
+
'SystolicBP': [systolic_bp],
|
| 663 |
+
'DiastolicBP': [diastolic_bp],
|
| 664 |
+
'Cholesterol': [cholesterol],
|
| 665 |
+
'SmokingStatus': [smoking_encoded],
|
| 666 |
+
'PhysicalActivity': [activity_encoded]
|
| 667 |
+
})
|
| 668 |
+
|
| 669 |
+
st.write("Input Data:", data)
|
| 670 |
+
|
| 671 |
+
if st.button("Predict Hypertension"):
|
| 672 |
+
prediction = hypertension_model.predict(data)
|
| 673 |
+
st.subheader("Prediction Result")
|
| 674 |
+
st.write("Hypertension Detected" if prediction[0] == 1 else "No Hypertension Detected")
|
| 675 |
+
|
| 676 |
+
elif selected == "Diabetes":
|
| 677 |
+
st.title("Diabetes Prediction")
|
| 678 |
+
|
| 679 |
+
# Input form for Diabetes
|
| 680 |
+
pregnancies = st.number_input("Pregnancies", min_value=0, max_value=20, value=1)
|
| 681 |
+
glucose = st.number_input("Glucose Level", min_value=0, max_value=300, value=100)
|
| 682 |
+
blood_pressure = st.number_input("Blood Pressure", min_value=0, max_value=200, value=80)
|
| 683 |
+
skin_thickness = st.number_input("Skin Thickness", min_value=0, max_value=100, value=20)
|
| 684 |
+
insulin = st.number_input("Insulin Level", min_value=0, max_value=900, value=30)
|
| 685 |
+
bmi = st.number_input("BMI", min_value=0.0, max_value=70.0, value=25.0)
|
| 686 |
+
dpf = st.number_input("Diabetes Pedigree Function", min_value=0.0, max_value=3.0, value=0.5)
|
| 687 |
+
age = st.number_input("Age", min_value=0, max_value=120, value=30)
|
| 688 |
+
|
| 689 |
+
data = pd.DataFrame({
|
| 690 |
+
'Pregnancies': [pregnancies],
|
| 691 |
+
'Glucose': [glucose],
|
| 692 |
+
'BloodPressure': [blood_pressure],
|
| 693 |
+
'SkinThickness': [skin_thickness],
|
| 694 |
+
'Insulin': [insulin],
|
| 695 |
+
'BMI': [bmi],
|
| 696 |
+
'DiabetesPedigreeFunction': [dpf],
|
| 697 |
+
'Age': [age]
|
| 698 |
+
})
|
| 699 |
+
|
| 700 |
+
st.write("Input Data:", data)
|
| 701 |
+
|
| 702 |
+
if st.button("Predict Diabetes"):
|
| 703 |
+
prediction = diabetes_model.predict(data)
|
| 704 |
+
st.subheader("Prediction Result")
|
| 705 |
+
st.write("Diabetes Detected" if prediction[0] == 1 else "No Diabetes Detected")
|
| 706 |
+
|
| 707 |
+
""")
|
| 708 |
+
|
| 709 |
+
!pip install pyngrok
|
| 710 |
+
|
| 711 |
+
!ngrok config add-authtoken 2r6YO98poBRtVcoGAcpePugmNTz_6Gb7QdBULNA8UfpeSgnLD
|
| 712 |
+
|
| 713 |
+
!pip install streamlit-option-menu
|
| 714 |
+
|
| 715 |
+
|
| 716 |
+
from pyngrok import ngrok
|
| 717 |
+
!streamlit run app.py &>/dev/null&
|
| 718 |
+
public_url = ngrok.connect(8501)
|
| 719 |
+
print(f"Streamlit app is live at {public_url}")
|
requirements.txt
ADDED
|
@@ -0,0 +1,12 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
pandas
|
| 2 |
+
numpy
|
| 3 |
+
matplotlib
|
| 4 |
+
seaborn
|
| 5 |
+
scikit-learn
|
| 6 |
+
xgboost
|
| 7 |
+
tensorflow
|
| 8 |
+
streamlit
|
| 9 |
+
streamlit-option-menu
|
| 10 |
+
pyngrok
|
| 11 |
+
opencv-python
|
| 12 |
+
Pillow
|