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║ 📊 12-WEEK IMPLEMENTATION STATUS TRACKER ║
║ Track all 34 skills usage across 4 phases ║
╚════════════════════════════════════════════════════════════════════════════╝
PHASE 1: FOUNDATION & CRITICAL FIXES (Weeks 1-2)
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Week 1: Security + State Propagation
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #18 │ OWASP Security Check │ ⬜ TODO │ 2-3h │ │
│ #17 │ API Security Hardening │ ⬜ TODO │ 4-6h │ │
│ #22 │ Python Testing Patterns (Use 1) │ ⬜ TODO │ 2-3h │ │
│ #2 │ Workflow Orchestration Pattern │ ⬜ TODO │ 4-6h │ │
│ #16 │ AI Wrapper/Structured Output │ ⬜ TODO │ 3-5h │ │
│ #20 │ API Rate Limiting │ ⬜ TODO │ 2-3h │ │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 1 TOTAL │ │ 17-26h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
Week 2: Orchestration + Security + Error Handling
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #3 │ Multi-Agent Orchestration │ ⬜ TODO │ 3-4h │ │
│ #19 │ LLM Security │ ⬜ TODO │ 3-4h │ │
│ #21 │ Python Error Handling │ ⬜ TODO │ 3-4h │ │
│ #27 │ Python Observability (Use 1) │ ⬜ TODO │ 4-5h │ Logging│
│ #24 │ GitHub Actions Templates │ ⬜ TODO │ 2-3h │ CI/CD │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 2 TOTAL │ │ 15-20h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
PHASE 1 OUTCOMES
- [ ] Security audit complete, all issues tracked
- [ ] JWT authentication on REST API
- [ ] biomarker_flags & safety_alerts propagating
- [ ] Unified response schema (API + CLI)
- [ ] Prompt injection protection
- [ ] Rate limiting per user
- [ ] Auth + security tests written (15+ tests)
- [ ] Coverage: 70% → 75%
════════════════════════════════════════════════════════════════════════════════
PHASE 2: TEST EXPANSION & AGENT OPTIMIZATION (Weeks 3-5)
════════════════════════════════════════════════════════════════════════════════
Week 3: Advanced Testing
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #22 │ Python Testing Patterns (Use 2) │ ⬜ TODO │ 8-10h │ Main focus
│ #26 │ Python Design Patterns │ ⬜ TODO │ 4-5h │ Refactor
│ #4 │ Agentic Development │ ⬜ TODO │ 3-4h │ Logic │
│ #13 │ Senior Prompt Engineer (Use 1) │ ⬜ TODO │ 5-6h │ │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 3 TOTAL │ │ 20-25h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
Week 4: Evaluation + Function Calling
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #14 │ LLM Evaluation │ ⬜ TODO │ 4-5h │ │
│ #5 │ Tool/Function Calling Patterns │ ⬜ TODO │ 3-4h │ │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 4 TOTAL │ │ 7-9h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
Week 5: Integrations
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #27 │ Python Observability (Use 2) │ ⬜ TODO │ 4-5h │ Metrics│
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 5 TOTAL │ │ 4-5h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
PHASE 2 OUTCOMES
- [ ] 90%+ test coverage achieved
- [ ] 50+ parametrized tests added
- [ ] Agent code refactored (SOLID principles)
- [ ] Prompts optimized for medical accuracy
- [ ] Evaluation metrics show +15% accuracy improvement
- [ ] Function calling prevents JSON parsing failures
- [ ] Structured JSON logging in all code
- [ ] Coverage: 75% → 90%
════════════════════════════════════════════════════════════════════════════════
PHASE 3: RETRIEVAL OPTIMIZATION & KNOWLEDGE GRAPHS (Weeks 6-8)
════════════════════════════════════════════════════════════════════════════════
Week 6: Hybrid Search + Chunking
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #8 │ Hybrid Search Implementation │ ⬜ TODO │ 4-6h │ │
│ #9 │ Chunking Strategy │ ⬜ TODO │ 4-5h │ │
│ #10 │ Embedding Pipeline Builder │ ⬜ TODO │ 3-4h │ │
│ #11 │ RAG Implementation │ ⬜ TODO │ 3-4h │ │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 6 TOTAL │ │ 14-19h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
Week 7: Knowledge Graphs
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #12 │ Knowledge Graph Builder │ ⬜ TODO │ 6-8h │ │
│ #1 │ LangChain Architecture (Deep) │ ⬜ TODO │ 3-4h │ │
│ #28 │ Memory Management │ ⬜ TODO │ 3-4h │ │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 7 TOTAL │ │ 12-16h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
Week 8: Cost Optimization
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #15 │ Cost-Aware LLM Pipeline │ ⬜ TODO │ 4-5h │ │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 8 TOTAL │ │ 4-5h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
PHASE 3 OUTCOMES
- [ ] Hybrid search (semantic + keyword) implemented
- [ ] Medical chunking improves knowledge quality
- [ ] Embeddings optimized for medical terminology
- [ ] Citation enforcement in all RAG outputs
- [ ] Knowledge graph built (100+ nodes, 500+ edges)
- [ ] LangChain advanced patterns implemented
- [ ] Context window optimization reduces token waste
- [ ] Model routing saves -40% on API costs
════════════════════════════════════════════════════════════════════════════════
PHASE 4: DEPLOYMENT, MONITORING & SCALING (Weeks 9-12)
════════════════════════════════════════════════════════════════════════════════
Week 9: FastAPI + Documentation
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #25 │ FastAPI Templates │ ⬜ TODO │ 3-4h │ │
│ #29 │ API Docs Generator │ ⬜ TODO │ 2-3h │ │
│ #30 │ GitHub PR Review Workflow │ ⬜ TODO │ 2-3h │ │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 9 TOTAL │ │ 7-10h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
Week 10: Monitoring + Reviews
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #27 │ Python Observability (Use 3) │ ⬜ TODO │ 4-5h │ Metrics│
│ #23 │ Code Review Excellence │ ⬜ TODO │ 2-3h │ │
│ #31 │ CI-CD Best Practices │ ⬜ TODO │ 3-4h │ │
│ #32 │ Frontend Accessibility (Optional) │ ⬜ TODO │ 2-3h │ if web │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 10 TOTAL │ │ 11-15h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
Week 11: Production Patterns
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #6 │ LLM App Dev with LangChain │ ⬜ TODO │ 4-5h │ │
│ #33 │ Webhook Receiver Hardener (Opt) │ ⬜ TODO │ 2-3h │ if int │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 11 TOTAL │ │ 6-8h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
Week 12: Final Integration + Deployment
┌─────────┬────────────────────────────────────┬──────────┬─────────┬────────┐
│ Skill # │ Skill Name │ Status │ Hours │ Notes │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ #7 │ RAG Agent Builder │ ⬜ TODO │ 4-5h │ Final │
│ #2 │ Workflow Orchestration (Refine) │ ⬜ TODO │ 2h │ review │
│ │ Comprehensive Testing │ ⬜ TODO │ 5h │ │
│ │ Documentation + Deployment │ ⬜ TODO │ 5h │ │
├─────────┼────────────────────────────────────┼──────────┼─────────┼────────┤
│ │ WEEK 12 TOTAL │ │ 16-18h │ │
└─────────┴────────────────────────────────────┴──────────┴─────────┴────────┘
PHASE 4 OUTCOMES
- [ ] FastAPI optimized for production
- [ ] API documentation auto-generated (/docs, /redoc)
- [ ] Code review standards established
- [ ] Full observability (logging, metrics)
- [ ] CI/CD with automated deployment
- [ ] Security best practices implemented
- [ ] Production-ready RAG agents
- [ ] System deployed and monitored
════════════════════════════════════════════════════════════════════════════════
SUMMARY BY SKILL: TOTAL USAGE
┌─────────┬────────────────────────────────────┬──────────┬────────────────┐
│ Skill # │ Skill Name │ Uses │ Total Hours │
├─────────┼────────────────────────────────────┼──────────┼────────────────┤
│ #1 │ LangChain Architecture │ 2x │ 6-8 hours │
│ #2 │ Workflow Orchestration │ 2x │ 8-10 hours │
│ #3 │ Multi-Agent Orchestration │ 1x │ 3-4 hours │
│ #4 │ Agentic Development │ 1x │ 3-4 hours │
│ #5 │ Tool/Function Calling │ 1x │ 3-4 hours │
│ #6 │ LLM App Dev LangChain │ 1x │ 4-5 hours │
│ #7 │ RAG Agent Builder │ 1x │ 4-5 hours │
│ #8 │ Hybrid Search │ 1x │ 4-6 hours │
│ #9 │ Chunking Strategy │ 1x │ 4-5 hours │
│ #10 │ Embedding Pipeline │ 1x │ 3-4 hours │
│ #11 │ RAG Implementation │ 1x │ 3-4 hours │
│ #12 │ Knowledge Graph Builder │ 1x │ 6-8 hours │
│ #13 │ Senior Prompt Engineer │ 1x │ 5-6 hours │
│ #14 │ LLM Evaluation │ 1x │ 4-5 hours │
│ #15 │ Cost-Aware LLM Pipeline │ 1x │ 4-5 hours │
│ #16 │ AI Wrapper/Structured Output │ 1x │ 3-5 hours │
│ #17 │ API Security Hardening │ 1x │ 4-6 hours │
│ #18 │ OWASP Security Check │ 1x │ 2-3 hours │
│ #19 │ LLM Security │ 1x │ 3-4 hours │
│ #20 │ API Rate Limiting │ 1x │ 2-3 hours │
│ #21 │ Python Error Handling │ 1x │ 3-4 hours │
│ #22 │ Python Testing Patterns │ 2x │ 10-13 hours │
│ #23 │ Code Review Excellence │ 1x │ 2-3 hours │
│ #24 │ GitHub Actions Templates │ 1x │ 2-3 hours │
│ #25 │ FastAPI Templates │ 1x │ 3-4 hours │
│ #26 │ Python Design Patterns │ 1x │ 4-5 hours │
│ #27 │ Python Observability │ 3x │ 12-15 hours │
│ #28 │ Memory Management │ 1x │ 3-4 hours │
│ #29 │ API Docs Generator │ 1x │ 2-3 hours │
│ #30 │ GitHub PR Review Workflow │ 1x │ 2-3 hours │
│ #31 │ CI-CD Best Practices │ 1x │ 3-4 hours │
│ #32 │ Frontend Accessibility │ 1x (opt) │ 2-3 hours │
│ #33 │ Webhook Receiver Hardener │ 1x (opt) │ 2-3 hours │
├─────────┼────────────────────────────────────┼──────────┼────────────────┤
│ │ TOTAL (REQUIRED) │ │ 130-160 hours │
│ │ TOTAL (WITH OPTIONAL) │ │ 135-165 hours │
└─────────┴────────────────────────────────────┴──────────┴────────────────┘
════════════════════════════════════════════════════════════════════════════════
KEY METRICS TRACKING
════════════════════════════════════════════════════════════════════════════════
Code Quality:
Baseline: Test coverage 70%, Response latency 25s, Accuracy 65%
Target: Test coverage 90%+, Response latency 15-20s, Accuracy 80%+
Week 1: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 2: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 3: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 4: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 5: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 6: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 7: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 8: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 9: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 10: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 11: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Week 12: Coverage: [ ]% Latency: [ ]s Accuracy: [ ]%
Final Goal: Coverage: 90%+ Latency: <20s Accuracy: >80%
API Costs (Monthly):
Baseline: $XXX
Week 4: $XXX (-XX%)
Week 8: $XXX (-40%)
Goal: $XXX (-40% reduction)
Tests Written:
Phase 1: auth (10), schema (5), state (8) = 23 tests
Phase 2: parametrized (50+), fixtures = 80+ tests
Phase 3: retrieval (15), graph (10) = 105+ tests
Phase 4: deployment (20) = 125+ tests
════════════════════════════════════════════════════════════════════════════════
COMPLETION CHECKLIST
════════════════════════════════════════════════════════════════════════════════
PHASE 1 ✓
[ ] All 6 Week 1 tasks complete
[ ] All 5 Week 2 tasks complete
[ ] PR created and merged
[ ] 23+ new tests written
[ ] Coverage: 70% → 75%
PHASE 2 ✓
[ ] All 4 Week 3 tasks complete
[ ] All 2 Week 4 tasks complete
[ ] Week 5 integration complete
[ ] 80+ parametrized tests written
[ ] Coverage: 75% → 90%
PHASE 3 ✓
[ ] All 4 Week 6 tasks complete
[ ] All 3 Week 7 tasks complete
[ ] All 1 Week 8 task complete
[ ] Hybrid search working
[ ] Knowledge graph created
[ ] -40% cost reduction achieved
PHASE 4 ✓
[ ] All 3 Week 9 tasks complete
[ ] All 4 Week 10 tasks complete
[ ] All 2 Week 11 tasks complete
[ ] All 4 Week 12 tasks complete
[ ] API documented at /docs
[ ] CI/CD pipeline working
[ ] System deployed to production
[ ] Monitoring active
FINAL VALIDATION ✓
[ ] 125+ tests passing
[ ] Coverage >90%
[ ] Latency <20s
[ ] Accuracy >80%
[ ] All 34 skills used
[ ] Documentation complete
[ ] Team trained
[ ] Handoff document created
════════════════════════════════════════════════════════════════════════════════
PROGRESS VISUALIZATION
Week 1 (Phase 1A) ████░░░░░░░░░░░░░░░░░░░░ 10%
Week 2 (Phase 1B) ████░░░░░░░░░░░░░░░░░░░░ 17%
Week 3 (Phase 2A) ████░░░░░░░░░░░░░░░░░░░░ 25%
Week 4 (Phase 2B) ████░░░░░░░░░░░░░░░░░░░░ 34%
Week 5 (Phase 2C) ████░░░░░░░░░░░░░░░░░░░░ 42%
Week 6 (Phase 3A) ████░░░░░░░░░░░░░░░░░░░░ 50%
Week 7 (Phase 3B) ████░░░░░░░░░░░░░░░░░░░░ 58%
Week 8 (Phase 3C) ████░░░░░░░░░░░░░░░░░░░░ 67%
Week 9 (Phase 4A) ████░░░░░░░░░░░░░░░░░░░░ 75%
Week 10(Phase 4B) ████░░░░░░░░░░░░░░░░░░░░ 83%
Week 11(Phase 4C) ████░░░░░░░░░░░░░░░░░░░░ 92%
Week 12(Phase 4D) ██████████████████████████ 100%
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