Agentic-RagBot / src /backup /automated_backup.py
MediGuard AI
feat: Initial release of MediGuard AI v2.0
c4f5f25
"""
Automated Backup System for MediGuard AI.
Provides automated backups of critical data with scheduling and retention.
"""
import asyncio
import logging
import os
import shutil
from dataclasses import asdict, dataclass
from datetime import datetime, timedelta
from enum import Enum
from pathlib import Path
from typing import Any
import boto3
from botocore.exceptions import ClientError
from src.settings import get_settings
logger = logging.getLogger(__name__)
class BackupType(Enum):
"""Types of backups."""
FULL = "full"
INCREMENTAL = "incremental"
DIFFERENTIAL = "differential"
class BackupStatus(Enum):
"""Backup status."""
PENDING = "pending"
RUNNING = "running"
COMPLETED = "completed"
FAILED = "failed"
RESTORING = "restoring"
@dataclass
class BackupConfig:
"""Backup configuration."""
name: str
backup_type: BackupType
source: str
destination: str
schedule: str # Cron expression
retention_days: int = 30
compression: bool = True
encryption: bool = True
notification_emails: list[str] = None
metadata: dict[str, Any] = None
@dataclass
class BackupJob:
"""Backup job information."""
job_id: str
config: BackupConfig
status: BackupStatus
created_at: datetime
started_at: datetime | None = None
completed_at: datetime | None = None
size_bytes: int = 0
file_count: int = 0
error_message: str | None = None
backup_path: str | None = None
checksum: str | None = None
def to_dict(self) -> dict[str, Any]:
"""Convert to dictionary."""
data = asdict(self)
data['config'] = asdict(self.config)
data['backup_type'] = self.config.backup_type.value
data['status'] = self.status.value
for field in ['created_at', 'started_at', 'completed_at']:
if data[field]:
data[field] = getattr(self, field).isoformat()
return data
class BackupProvider:
"""Base class for backup providers."""
async def backup(self, source: str, destination: str, config: BackupConfig) -> dict[str, Any]:
"""Perform backup."""
raise NotImplementedError
async def restore(self, backup_path: str, destination: str) -> bool:
"""Restore from backup."""
raise NotImplementedError
async def list_backups(self, prefix: str) -> list[dict[str, Any]]:
"""List available backups."""
raise NotImplementedError
async def delete_backup(self, backup_path: str) -> bool:
"""Delete a backup."""
raise NotImplementedError
class FileSystemBackupProvider(BackupProvider):
"""File system backup provider."""
def __init__(self, base_path: str):
self.base_path = Path(base_path)
self.base_path.mkdir(parents=True, exist_ok=True)
async def backup(self, source: str, destination: str, config: BackupConfig) -> dict[str, Any]:
"""Perform file system backup."""
source_path = Path(source)
dest_path = self.base_path / destination
# Create destination directory
dest_path.mkdir(parents=True, exist_ok=True)
# Track statistics
total_size = 0
file_count = 0
if config.backup_type == BackupType.FULL:
# Full backup
for item in source_path.rglob("*"):
if item.is_file():
rel_path = item.relative_to(source_path)
dest_file = dest_path / rel_path
dest_file.parent.mkdir(parents=True, exist_ok=True)
# Copy file
shutil.copy2(item, dest_file)
total_size += item.stat().st_size
file_count += 1
# Compress if enabled
if config.compression:
archive_path = dest_path.with_suffix('.tar.gz')
await self._compress_directory(dest_path, archive_path)
shutil.rmtree(dest_path) # Remove uncompressed
dest_path = archive_path
total_size = dest_path.stat().st_size
return {
"path": str(dest_path),
"size_bytes": total_size,
"file_count": file_count
}
async def restore(self, backup_path: str, destination: str) -> bool:
"""Restore from backup."""
try:
backup_path = Path(backup_path)
dest_path = Path(destination)
# Decompress if needed
if backup_path.suffix == '.gz':
temp_dir = dest_path.parent / f"temp_{datetime.now().timestamp()}"
await self._decompress_archive(backup_path, temp_dir)
backup_path = temp_dir
# Copy files
if backup_path.is_dir():
shutil.copytree(backup_path, dest_path, dirs_exist_ok=True)
else:
dest_path.parent.mkdir(parents=True, exist_ok=True)
shutil.copy2(backup_path, dest_path)
# Cleanup temp directory
if str(temp_dir) in str(backup_path):
shutil.rmtree(temp_dir)
return True
except Exception as e:
logger.error(f"Restore failed: {e}")
return False
async def list_backups(self, prefix: str) -> list[dict[str, Any]]:
"""List available backups."""
backups = []
for item in self.base_path.glob(f"{prefix}*"):
if item.is_file() or item.is_dir():
stat = item.stat()
backups.append({
"name": item.name,
"path": str(item),
"size_bytes": stat.st_size,
"created_at": datetime.fromtimestamp(stat.st_ctime).isoformat(),
"type": "directory" if item.is_dir() else "file"
})
return sorted(backups, key=lambda x: x["created_at"], reverse=True)
async def delete_backup(self, backup_path: str) -> bool:
"""Delete a backup."""
try:
path = Path(backup_path)
if path.is_dir():
shutil.rmtree(path)
else:
path.unlink()
return True
except Exception as e:
logger.error(f"Failed to delete backup: {e}")
return False
async def _compress_directory(self, source_dir: Path, archive_path: Path):
"""Compress directory to tar.gz."""
with tarfile.open(archive_path, "w:gz") as tar:
tar.add(source_dir, arcname=source_dir.name)
async def _decompress_archive(self, archive_path: Path, dest_dir: Path):
"""Decompress tar.gz archive."""
with tarfile.open(archive_path, "r:gz") as tar:
tar.extractall(dest_dir)
class S3BackupProvider(BackupProvider):
"""S3 backup provider."""
def __init__(self, bucket_name: str, aws_access_key: str, aws_secret_key: str, region: str = "us-east-1"):
self.bucket_name = bucket_name
self.s3_client = boto3.client(
's3',
aws_access_key_id=aws_access_key,
aws_secret_access_key=aws_secret_key,
region_name=region
)
async def backup(self, source: str, destination: str, config: BackupConfig) -> dict[str, Any]:
"""Upload backup to S3."""
source_path = Path(source)
# Create temporary archive
temp_dir = Path("/tmp/backup_temp")
temp_dir.mkdir(exist_ok=True)
archive_path = temp_dir / f"{destination}.tar.gz"
# Create archive
with tarfile.open(archive_path, "w:gz") as tar:
tar.add(source_path, arcname=source_path.name)
try:
# Upload to S3
file_size = archive_path.stat().st_size
file_count = len(list(source_path.rglob("*"))) if source_path.is_dir() else 1
self.s3_client.upload_file(
str(archive_path),
self.bucket_name,
destination,
ExtraArgs={
'ServerSideEncryption': 'AES256' if config.encryption else None
}
)
return {
"path": f"s3://{self.bucket_name}/{destination}",
"size_bytes": file_size,
"file_count": file_count
}
finally:
# Cleanup
archive_path.unlink()
async def restore(self, backup_path: str, destination: str) -> bool:
"""Restore from S3 backup."""
try:
# Parse S3 path
if backup_path.startswith("s3://"):
backup_path = backup_path[5:] # Remove s3://
bucket, key = backup_path.split("/", 1)
else:
key = backup_path
bucket = self.bucket_name
# Download to temp location
temp_dir = Path("/tmp/backup_restore")
temp_dir.mkdir(exist_ok=True)
temp_file = temp_dir / Path(key).name
self.s3_client.download_file(bucket, key, str(temp_file))
# Extract
dest_path = Path(destination)
with tarfile.open(temp_file, "r:gz") as tar:
tar.extractall(dest_path)
# Cleanup
temp_file.unlink()
return True
except Exception as e:
logger.error(f"S3 restore failed: {e}")
return False
async def list_backups(self, prefix: str) -> list[dict[str, Any]]:
"""List backups in S3."""
try:
response = self.s3_client.list_objects_v2(
Bucket=self.bucket_name,
Prefix=prefix
)
backups = []
for obj in response.get('Contents', []):
backups.append({
"name": obj['Key'],
"path": f"s3://{self.bucket_name}/{obj['Key']}",
"size_bytes": obj['Size'],
"created_at": obj['LastModified'].isoformat(),
"type": "file"
})
return sorted(backups, key=lambda x: x["created_at"], reverse=True)
except ClientError as e:
logger.error(f"Failed to list S3 backups: {e}")
return []
async def delete_backup(self, backup_path: str) -> bool:
"""Delete backup from S3."""
try:
if backup_path.startswith("s3://"):
backup_path = backup_path[5:]
bucket, key = backup_path.split("/", 1)
else:
key = backup_path
bucket = self.bucket_name
self.s3_client.delete_object(Bucket=bucket, Key=key)
return True
except ClientError as e:
logger.error(f"Failed to delete S3 backup: {e}")
return False
class DatabaseBackupProvider(BackupProvider):
"""Database backup provider."""
def __init__(self, connection_string: str):
self.connection_string = connection_string
async def backup(self, source: str, destination: str, config: BackupConfig) -> dict[str, Any]:
"""Backup database."""
# This would implement database-specific backup logic
# For example, PostgreSQL pg_dump or MongoDB mongodump
pass
async def restore(self, backup_path: str, destination: str) -> bool:
"""Restore database."""
pass
class BackupManager:
"""Manages backup operations."""
def __init__(self):
self.providers: dict[str, BackupProvider] = {}
self.configs: dict[str, BackupConfig] = {}
self.jobs: dict[str, BackupJob] = {}
self.scheduler_running = False
def register_provider(self, name: str, provider: BackupProvider):
"""Register a backup provider."""
self.providers[name] = provider
def add_config(self, config: BackupConfig):
"""Add a backup configuration."""
self.configs[config.name] = config
async def create_backup_job(self, config_name: str) -> str:
"""Create and start a backup job."""
if config_name not in self.configs:
raise ValueError(f"Backup config '{config_name}' not found")
config = self.configs[config_name]
job_id = f"backup_{config_name}_{datetime.now().strftime('%Y%m%d_%H%M%S')}"
job = BackupJob(
job_id=job_id,
config=config,
status=BackupStatus.PENDING,
created_at=datetime.utcnow()
)
self.jobs[job_id] = job
# Start backup in background
asyncio.create_task(self._execute_backup(job_id))
return job_id
async def _execute_backup(self, job_id: str):
"""Execute a backup job."""
job = self.jobs[job_id]
job.status = BackupStatus.RUNNING
job.started_at = datetime.utcnow()
try:
config = job.config
provider = self.providers.get(config.destination.split(":")[0])
if not provider:
raise ValueError(f"No provider for destination: {config.destination}")
# Perform backup
result = await provider.backup(config.source, f"{config.name}/{job_id}", config)
# Update job
job.status = BackupStatus.COMPLETED
job.completed_at = datetime.utcnow()
job.size_bytes = result["size_bytes"]
job.file_count = result["file_count"]
job.backup_path = result["path"]
# Calculate checksum
job.checksum = await self._calculate_checksum(result["path"])
logger.info(f"Backup {job_id} completed successfully")
# Send notification
await self._send_notification(job, "completed")
except Exception as e:
job.status = BackupStatus.FAILED
job.completed_at = datetime.utcnow()
job.error_message = str(e)
logger.error(f"Backup {job_id} failed: {e}")
# Send notification
await self._send_notification(job, "failed")
async def restore_backup(self, backup_path: str, destination: str) -> bool:
"""Restore from backup."""
# Determine provider from backup path
if backup_path.startswith("s3://"):
provider = self.providers.get("s3")
else:
provider = self.providers.get("filesystem")
if not provider:
raise ValueError("No suitable provider found for backup")
return await provider.restore(backup_path, destination)
async def list_backups(self, config_name: str = None) -> list[dict[str, Any]]:
"""List available backups."""
all_backups = []
if config_name:
configs = [self.configs.get(config_name)]
else:
configs = self.configs.values()
for config in configs:
if not config:
continue
provider = self.providers.get(config.destination.split(":")[0])
if provider:
backups = await provider.list_backups(f"{config.name}/")
all_backups.extend(backups)
return sorted(all_backups, key=lambda x: x["created_at"], reverse=True)
async def delete_backup(self, backup_path: str) -> bool:
"""Delete a backup."""
if backup_path.startswith("s3://"):
provider = self.providers.get("s3")
else:
provider = self.providers.get("filesystem")
if provider:
return await provider.delete_backup(backup_path)
return False
async def cleanup_old_backups(self):
"""Clean up backups older than retention period."""
for config in self.configs.values():
cutoff_date = datetime.utcnow() - timedelta(days=config.retention_days)
provider = self.providers.get(config.destination.split(":")[0])
if not provider:
continue
backups = await provider.list_backups(f"{config.name}/")
for backup in backups:
backup_date = datetime.fromisoformat(backup["created_at"])
if backup_date < cutoff_date:
await provider.delete_backup(backup["path"])
logger.info(f"Deleted old backup: {backup['path']}")
async def get_job_status(self, job_id: str) -> dict[str, Any] | None:
"""Get backup job status."""
job = self.jobs.get(job_id)
return job.to_dict() if job else None
async def list_jobs(self) -> list[dict[str, Any]]:
"""List all backup jobs."""
return [job.to_dict() for job in self.jobs.values()]
async def _calculate_checksum(self, path: str) -> str:
"""Calculate checksum for backup integrity."""
# Simple checksum calculation
import hashlib
if os.path.isfile(path):
with open(path, 'rb') as f:
return hashlib.sha256(f.read()).hexdigest()
else:
# For directories, calculate based on file list and sizes
checksum = hashlib.sha256()
for root, dirs, files in os.walk(path):
for file in sorted(files):
file_path = os.path.join(root, file)
checksum.update(file.encode())
checksum.update(str(os.path.getsize(file_path)).encode())
return checksum.hexdigest()
async def _send_notification(self, job: BackupJob, status: str):
"""Send backup notification."""
# Implement email/webhook notifications
if job.config.notification_emails:
message = f"""
Backup {status}: {job.job_id}
Config: {job.config.name}
Started: {job.started_at}
Completed: {job.completed_at}
Size: {job.size_bytes} bytes
Files: {job.file_count}
"""
if job.error_message:
message += f"\nError: {job.error_message}"
logger.info(f"Backup notification: {message}")
# Here you would implement actual email sending
# Global backup manager
_backup_manager: BackupManager | None = None
async def get_backup_manager() -> BackupManager:
"""Get or create the global backup manager."""
global _backup_manager
if not _backup_manager:
_backup_manager = BackupManager()
# Register providers based on configuration
settings = get_settings()
# File system provider
fs_provider = FileSystemBackupProvider("/tmp/backups")
_backup_manager.register_provider("filesystem", fs_provider)
# S3 provider if configured
if hasattr(settings, 'AWS_ACCESS_KEY_ID'):
s3_provider = S3BackupProvider(
bucket_name=settings.AWS_S3_BUCKET,
aws_access_key=settings.AWS_ACCESS_KEY_ID,
aws_secret_key=settings.AWS_SECRET_ACCESS_KEY,
region=settings.AWS_REGION
)
_backup_manager.register_provider("s3", s3_provider)
# Add default backup configs
await _setup_default_configs()
# Start cleanup scheduler
asyncio.create_task(_cleanup_scheduler())
return _backup_manager
async def _setup_default_configs():
"""Setup default backup configurations."""
manager = await get_backup_manager()
# OpenSearch backup
opensearch_config = BackupConfig(
name="opensearch",
backup_type=BackupType.FULL,
source="/var/lib/opensearch",
destination="filesystem:backups/opensearch",
schedule="0 2 * * *", # Daily at 2 AM
retention_days=30,
compression=True,
encryption=True
)
manager.add_config(opensearch_config)
# Redis backup
redis_config = BackupConfig(
name="redis",
backup_type=BackupType.FULL,
source="/var/lib/redis",
destination="filesystem:backups/redis",
schedule="0 3 * * *", # Daily at 3 AM
retention_days=7,
compression=True,
encryption=True
)
manager.add_config(redis_config)
# Application data backup
app_config = BackupConfig(
name="application",
backup_type=BackupType.INCREMENTAL,
source="/app/data",
destination="filesystem:backups/application",
schedule="0 4 * * *", # Daily at 4 AM
retention_days=90,
compression=True,
encryption=True
)
manager.add_config(app_config)
async def _cleanup_scheduler():
"""Schedule periodic cleanup of old backups."""
while True:
try:
manager = await get_backup_manager()
await manager.cleanup_old_backups()
# Run daily
await asyncio.sleep(86400)
except Exception as e:
logger.error(f"Backup cleanup error: {e}")
await asyncio.sleep(3600) # Retry in 1 hour
# CLI commands for backup management
async def create_backup(config_name: str):
"""Create a backup for the specified configuration."""
manager = await get_backup_manager()
job_id = await manager.create_backup_job(config_name)
print(f"Backup job created: {job_id}")
# Wait for completion
while True:
job = await manager.get_job_status(job_id)
if job['status'] in ['completed', 'failed']:
break
await asyncio.sleep(5)
print(f"Backup {job['status']}: {job_id}")
if job['error_message']:
print(f"Error: {job['error_message']}")
async def list_backups(config_name: str = None):
"""List available backups."""
manager = await get_backup_manager()
backups = await manager.list_backups(config_name)
for backup in backups:
print(f"{backup['created_at']}: {backup['name']} ({backup['size_bytes']} bytes)")
async def restore_backup(backup_path: str, destination: str):
"""Restore from backup."""
manager = await get_backup_manager()
success = await manager.restore_backup(backup_path, destination)
if success:
print(f"Successfully restored from {backup_path}")
else:
print(f"Failed to restore from {backup_path}")