Agentic-RagBot / src /middleware /validation.py
MediGuard AI
feat: Initial release of MediGuard AI v2.0
c4f5f25
"""
Request/Response Validation Middleware for MediGuard AI.
Provides comprehensive validation and sanitization of API data.
"""
import asyncio
import json
import logging
import re
from typing import Any
import bleach
from fastapi import HTTPException, Request, Response, status
from fastapi.responses import JSONResponse
from starlette.middleware.base import BaseHTTPMiddleware
logger = logging.getLogger(__name__)
class ValidationRule:
"""Base validation rule."""
def __init__(self, name: str, message: str = None):
self.name = name
self.message = message or f"Validation failed for {name}"
def validate(self, value: Any) -> bool:
"""Validate the value."""
raise NotImplementedError
class RequiredRule(ValidationRule):
"""Required field validation."""
def validate(self, value: Any) -> bool:
return value is not None and value != ""
class TypeRule(ValidationRule):
"""Type validation."""
def __init__(self, expected_type: type, **kwargs):
super().__init__("type")
self.expected_type = expected_type
def validate(self, value: Any) -> bool:
try:
if self.expected_type == bool and isinstance(value, str):
return value.lower() in ('true', 'false', '1', '0')
return isinstance(value, self.expected_type)
except:
return False
class RangeRule(ValidationRule):
"""Numeric range validation."""
def __init__(self, min_val: float = None, max_val: float = None, **kwargs):
super().__init__("range")
self.min_val = min_val
self.max_val = max_val
def validate(self, value: Any) -> bool:
try:
num_val = float(value)
if self.min_val is not None and num_val < self.min_val:
return False
if self.max_val is not None and num_val > self.max_val:
return False
return True
except:
return False
class LengthRule(ValidationRule):
"""String length validation."""
def __init__(self, min_length: int = None, max_length: int = None, **kwargs):
super().__init__("length")
self.min_length = min_length
self.max_length = max_length
def validate(self, value: Any) -> bool:
if not isinstance(value, (str, list)):
return False
length = len(value)
if self.min_length is not None and length < self.min_length:
return False
if self.max_length is not None and length > self.max_length:
return False
return True
class PatternRule(ValidationRule):
"""Regex pattern validation."""
def __init__(self, pattern: str, **kwargs):
super().__init__("pattern")
self.pattern = re.compile(pattern)
def validate(self, value: Any) -> bool:
if not isinstance(value, str):
return False
return bool(self.pattern.match(value))
class EmailRule(PatternRule):
"""Email validation."""
def __init__(self, **kwargs):
pattern = r'^[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}$'
super().__init__(pattern, **kwargs)
self.name = "email"
class PhoneRule(PatternRule):
"""Phone number validation."""
def __init__(self, **kwargs):
pattern = r'^\+?1?-?\.?\s?\(?([0-9]{3})\)?[\s.-]?([0-9]{3})[\s.-]?([0-9]{4})$'
super().__init__(pattern, **kwargs)
self.name = "phone"
class PHIValidationRule(ValidationRule):
"""PHI (Protected Health Information) validation."""
def __init__(self, allow_phi: bool = False, **kwargs):
super().__init__("phi")
self.allow_phi = allow_phi
# Patterns for common PHI
self.phi_patterns = [
(r'\b\d{3}-\d{2}-\d{4}\b', 'SSN'),
(r'\b\d{10}\b', 'Phone Number'),
(r'\b\d{3}-\d{3}-\d{4}\b', 'US Phone'),
(r'\b[A-Z]{2}\d{4}\b', 'Medical Record'),
(r'\b\d{1,2}[/-]\d{1,2}[/-]\d{2,4}\b', 'Date of Birth'),
]
def validate(self, value: Any) -> bool:
if self.allow_phi:
return True
if not isinstance(value, str):
return True
for pattern, phi_type in self.phi_patterns:
if re.search(pattern, value):
logger.warning(f"Potential PHI detected: {phi_type}")
return False
return True
class SanitizationRule:
"""Base sanitization rule."""
def sanitize(self, value: Any) -> Any:
"""Sanitize the value."""
raise NotImplementedError
class HTMLSanitizationRule(SanitizationRule):
"""HTML sanitization to prevent XSS."""
def __init__(self, allowed_tags: list[str] = None, allowed_attributes: list[str] = None):
self.allowed_tags = allowed_tags or ['p', 'br', 'strong', 'em', 'ul', 'ol', 'li']
self.allowed_attributes = allowed_attributes or []
def sanitize(self, value: Any) -> Any:
if not isinstance(value, str):
return value
# Remove all HTML tags except allowed ones
return bleach.clean(
value,
tags=self.allowed_tags,
attributes=self.allowed_attributes,
strip=True
)
class SQLInjectionSanitizationRule(SanitizationRule):
"""SQL injection prevention."""
def __init__(self):
# Common SQL injection patterns
self.sql_patterns = [
r"(\b(SELECT|INSERT|UPDATE|DELETE|DROP|CREATE|ALTER|EXEC|UNION)\b)",
r"(\b(OR|AND)\s+\d+\s*=\s*\d+)",
r"(\b(OR|AND)\s+['\"]\w+['\"]\s*=\s*['\"]\w+['\"])",
r"(--|#|\/\*|\*\/)",
r"(\b(SCRIPT|JAVASCRIPT|VBSCRIPT|ONLOAD|ONERROR)\b)",
]
self.patterns = [re.compile(pattern, re.IGNORECASE) for pattern in self.sql_patterns]
def sanitize(self, value: Any) -> Any:
if not isinstance(value, str):
return value
# Flag suspicious content
for pattern in self.patterns:
if pattern.search(value):
logger.warning(f"Potential SQL injection detected: {value[:100]}")
# Remove or escape dangerous characters
value = re.sub(r"[;'\"\\]", "", value)
return value
class ValidationSchema:
"""Validation schema for request/response data."""
def __init__(self):
self.rules: dict[str, list[ValidationRule]] = {}
self.sanitizers: list[SanitizationRule] = []
self.required_fields: list[str] = []
def add_field(self, field_name: str, rules: list[ValidationRule] = None, required: bool = False):
"""Add field validation rules."""
if rules:
self.rules[field_name] = rules
if required:
self.required_fields.append(field_name)
def add_sanitizer(self, sanitizer: SanitizationRule):
"""Add a sanitization rule."""
self.sanitizers.append(sanitizer)
def validate(self, data: dict[str, Any]) -> dict[str, list[str]]:
"""Validate data against schema."""
errors = {}
# Check required fields
for field in self.required_fields:
if field not in data or data[field] is None:
errors[field] = errors.get(field, [])
errors[field].append("Field is required")
# Validate each field
for field, rules in self.rules.items():
if field in data:
value = data[field]
for rule in rules:
if not rule.validate(value):
errors[field] = errors.get(field, [])
errors[field].append(rule.message)
return errors
def sanitize(self, data: dict[str, Any]) -> dict[str, Any]:
"""Sanitize data."""
sanitized = data.copy()
# Apply field-specific sanitization
for field, value in sanitized.items():
if isinstance(value, str):
for sanitizer in self.sanitizers:
sanitized[field] = sanitizer.sanitize(value)
return sanitized
class RequestValidationMiddleware(BaseHTTPMiddleware):
"""Middleware for request validation."""
def __init__(
self,
app,
schemas: dict[str, ValidationSchema] = None,
strict_mode: bool = True,
sanitize_all: bool = True
):
super().__init__(app)
self.schemas = schemas or {}
self.strict_mode = strict_mode
self.sanitize_all = sanitize_all
# Default sanitizers
self.default_sanitizers = [
HTMLSanitizationRule(),
SQLInjectionSanitizationRule()
]
async def dispatch(self, request: Request, call_next):
"""Validate and sanitize request."""
# Only validate POST, PUT, PATCH requests
if request.method not in ["POST", "PUT", "PATCH"]:
return await call_next(request)
try:
# Get request body
body = await request.body()
if not body:
return await call_next(request)
# Parse JSON
try:
data = json.loads(body.decode())
except json.JSONDecodeError:
raise HTTPException(
status_code=status.HTTP_400_BAD_REQUEST,
detail="Invalid JSON in request body"
)
# Get schema for this endpoint
schema = self._get_schema_for_request(request)
if schema:
# Validate data
errors = schema.validate(data)
if errors:
raise HTTPException(
status_code=status.HTTP_422_UNPROCESSABLE_ENTITY,
detail={
"error": "Validation failed",
"details": errors
}
)
# Sanitize data
if self.sanitize_all:
data = schema.sanitize(data)
# Update request body
request._body = json.dumps(data).encode()
# Add validation metadata
request.state.validated = True
request.state.sanitized = self.sanitize_all
return await call_next(request)
except HTTPException:
raise
except Exception as e:
logger.error(f"Request validation error: {e}")
if self.strict_mode:
raise HTTPException(
status_code=status.HTTP_400_BAD_REQUEST,
detail="Request validation failed"
)
else:
return await call_next(request)
def _get_schema_for_request(self, request: Request) -> ValidationSchema | None:
"""Get validation schema for request endpoint."""
path = request.url.path
method = request.method.lower()
# Try to match schema by path and method
schema_key = f"{method}:{path}"
return self.schemas.get(schema_key)
class ResponseValidationMiddleware(BaseHTTPMiddleware):
"""Middleware for response validation."""
def __init__(
self,
app,
schemas: dict[str, ValidationSchema] = None,
validate_success_only: bool = True
):
super().__init__(app)
self.schemas = schemas or {}
self.validate_success_only = validate_success_only
async def dispatch(self, request: Request, call_next):
"""Validate response."""
response = await call_next(request)
# Only validate JSON responses
if response.headers.get("content-type") != "application/json":
return response
# Skip error responses if configured
if self.validate_success_only and response.status_code >= 400:
return response
try:
# Get response body
body = b""
async for chunk in response.body_iterator:
body += chunk
# Parse JSON
data = json.loads(body.decode())
# Get schema for this endpoint
schema = self._get_schema_for_request(request)
if schema:
# Validate response data
errors = schema.validate(data)
if errors:
logger.error(f"Response validation failed: {errors}")
# Return error response
return JSONResponse(
status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
content={
"error": "Internal server error",
"message": "Response validation failed"
}
)
# Recreate response with validated body
return Response(
content=body,
status_code=response.status_code,
headers=dict(response.headers),
media_type="application/json"
)
except Exception as e:
logger.error(f"Response validation error: {e}")
return response
def _get_schema_for_request(self, request: Request) -> ValidationSchema | None:
"""Get validation schema for response endpoint."""
path = request.url.path
method = request.method.lower()
schema_key = f"{method}:{path}:response"
return self.schemas.get(schema_key)
# Predefined schemas for common endpoints
class CommonSchemas:
"""Common validation schemas."""
@staticmethod
def biomarker_schema() -> ValidationSchema:
"""Schema for biomarker data."""
schema = ValidationSchema()
# Add sanitizers
schema.add_sanitizer(HTMLSanitizationRule())
schema.add_sanitizer(SQLInjectionSanitizationRule())
schema.add_sanitizer(PHIValidationRule(allow_phi=False))
# Biomarker name rules
schema.add_field("name", [
RequiredRule(),
TypeRule(str),
LengthRule(min_length=1, max_length=100),
PatternRule(r"^[a-zA-Z\s]+$")
], required=True)
# Biomarker value rules
schema.add_field("value", [
RequiredRule(),
TypeRule((int, float, str)),
RangeRule(min_val=0, max_val=10000)
], required=True)
# Unit rules
schema.add_field("unit", [
TypeRule(str),
LengthRule(max_length=20)
])
# Timestamp rules
schema.add_field("timestamp", [
TypeRule(str),
PatternRule(r"^\d{4}-\d{2}-\d{2}T\d{2}:\d{2}:\d{2}(\.\d+)?Z?$")
])
return schema
@staticmethod
def patient_info_schema() -> ValidationSchema:
"""Schema for patient information."""
schema = ValidationSchema()
# Add PHI-aware sanitizers
schema.add_sanitizer(HTMLSanitizationRule())
schema.add_sanitizer(SQLInjectionSanitizationRule())
schema.add_sanitizer(PHIValidationRule(allow_phi=True)) # Allow PHI in patient context
# Age validation
schema.add_field("age", [
TypeRule(int),
RangeRule(min_val=0, max_val=150)
])
# Gender validation
schema.add_field("gender", [
TypeRule(str),
PatternRule(r"^(male|female|other)$", re.IGNORECASE)
])
# Symptoms validation
schema.add_field("symptoms", [
TypeRule(list),
LengthRule(max_length=10)
])
# Medical history
schema.add_field("medical_history", [
TypeRule(str),
LengthRule(max_length=1000)
])
return schema
@staticmethod
def analysis_request_schema() -> ValidationSchema:
"""Schema for analysis requests."""
schema = ValidationSchema()
# Add sanitizers
schema.add_sanitizer(HTMLSanitizationRule())
schema.add_sanitizer(SQLInjectionSanitizationRule())
schema.add_sanitizer(PHIValidationRule(allow_phi=False))
# Biomarkers array
schema.add_field("biomarkers", [
RequiredRule(),
TypeRule(dict),
LengthRule(min_length=1, max_length=50)
], required=True)
# Patient context
schema.add_field("patient_context", [
TypeRule(dict)
])
# Analysis type
schema.add_field("analysis_type", [
TypeRule(str),
PatternRule(r"^(basic|comprehensive|detailed)$")
])
return schema
# Validation decorator
def validate_request(schema: ValidationSchema):
"""Decorator for request validation."""
def decorator(func):
if asyncio.iscoroutinefunction(func):
@wraps(func)
async def async_wrapper(request: Request, *args, **kwargs):
# Check if already validated
if getattr(request.state, 'validated', False):
return await func(request, *args, **kwargs)
# Get request body
body = await request.body()
data = json.loads(body.decode())
# Validate
errors = schema.validate(data)
if errors:
raise HTTPException(
status_code=status.HTTP_422_UNPROCESSABLE_ENTITY,
detail={"validation_errors": errors}
)
# Sanitize
data = schema.sanitize(data)
return await func(request, *args, **kwargs)
return async_wrapper
else:
@wraps(func)
def sync_wrapper(*args, **kwargs):
return func(*args, **kwargs)
return sync_wrapper
return decorator
# Utility functions
def create_validation_config() -> dict[str, ValidationSchema]:
"""Create default validation configuration."""
return {
"post:/analyze/structured": CommonSchemas.analysis_request_schema(),
"post:/analyze/natural": CommonSchemas.analysis_request_schema(),
"post:/ask": ValidationSchema(), # Basic schema for questions
"post:/search": ValidationSchema(), # Basic schema for search
"post:/patient/register": CommonSchemas.patient_info_schema(),
"put:/patient/update": CommonSchemas.patient_info_schema(),
}
def sanitize_input(text: str, allow_html: bool = False) -> str:
"""Quick sanitization function."""
if not isinstance(text, str):
return str(text)
# Remove potential SQL injection
text = re.sub(r"[;'\"\\]", "", text)
# Remove HTML if not allowed
if not allow_html:
text = bleach.clean(text, tags=[], strip=True)
return text.strip()
def validate_email(email: str) -> bool:
"""Validate email format."""
pattern = r'^[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}$'
return bool(re.match(pattern, email))
def validate_phone(phone: str) -> bool:
"""Validate phone number format."""
pattern = r'^\+?1?-?\.?\s?\(?([0-9]{3})\)?[\s.-]?([0-9]{3})[\s.-]?([0-9]{4})$'
return bool(re.match(pattern, phone))
def detect_phi(text: str) -> list[str]:
"""Detect potential PHI in text."""
phi_types = []
phi_patterns = [
(r'\b\d{3}-\d{2}-\d{4}\b', 'SSN'),
(r'\b\d{10}\b', 'Phone Number'),
(r'\b[A-Z]{2}\d{4}\b', 'Medical Record'),
(r'\b\d{1,2}[/-]\d{1,2}[/-]\d{2,4}\b', 'Date of Birth'),
]
for pattern, phi_type in phi_patterns:
if re.search(pattern, text):
phi_types.append(phi_type)
return phi_types