Taranpreet Singh
Fix: handle numpy labels correctly for small HF demo datasets
94d44dd
import os
import json
import joblib
import logging
import numpy as np
from datetime import datetime
from sklearn.ensemble import RandomForestClassifier
from sklearn.model_selection import StratifiedKFold
from sklearn.metrics import (precision_recall_fscore_support, roc_auc_score,
average_precision_score, confusion_matrix, precision_recall_curve)
logger = logging.getLogger('nids')
class BinaryLabelEncoder:
"""Simple encoder mapping: BENIGN -> 0, anything else -> 1.
Provides transform/inverse_transform and `classes_` compatible attribute.
"""
def __init__(self):
self.classes_ = np.array([0, 1])
def transform(self, y_series):
# accept pandas Series or array-like labels
y_str = np.array(y_series).astype(str)
return (y_str != 'BENIGN').astype(int)
def inverse_transform(self, y_arr):
y = np.array(y_arr).astype(int)
return np.where(y == 0, 'BENIGN', 'ATTACK')
def validate_and_select_features(df, features):
missing = [c for c in features if c not in df.columns]
if missing:
raise ValueError(f"Missing feature columns: {missing}")
X = df[features].copy()
# drop constant features
nunique = X.nunique()
const_cols = nunique[nunique <= 1].index.tolist()
if const_cols:
logger.info('Dropping constant columns: %s', const_cols)
X.drop(columns=const_cols, inplace=True)
return X
def train_model_cv(df, features, target='Label', n_splits=5, n_estimators=100, max_depth=None, seed=42):
"""Train RandomForest with StratifiedKFold and return best model plus metrics.
- Uses class_weight='balanced' to handle class imbalance (no SMOTE).
- Computes precision, recall, F1, PR-AUC, ROC-AUC and confusion matrices per fold.
"""
# explicit binary encoding
encoder = BinaryLabelEncoder()
y_raw = df[target].astype(str)
y = encoder.transform(y_raw)
X = validate_and_select_features(df, features)
skf = StratifiedKFold(n_splits=n_splits, shuffle=True, random_state=seed)
fold_metrics = []
models = []
# collect validation probabilities and labels across folds for PR curve and thresholding
all_val_probas = []
all_val_labels = []
X_arr = X.values
y_arr = np.asarray(y)
for fold, (train_idx, val_idx) in enumerate(skf.split(X_arr, y_arr), start=1):
clf = RandomForestClassifier(
n_estimators=n_estimators,
max_depth=(None if max_depth == 0 else max_depth),
class_weight='balanced',
random_state=seed,
n_jobs=-1,
)
clf.fit(X_arr[train_idx], y_arr[train_idx])
proba = clf.predict_proba(X_arr[val_idx])[:, 1]
preds = (proba >= 0.5).astype(int)
all_val_probas.extend(proba.tolist())
all_val_labels.extend(y_arr[val_idx].tolist())
prec, rec, f1, _ = precision_recall_fscore_support(y_arr[val_idx], preds, average='binary', zero_division=0)
pr_auc = average_precision_score(y_arr[val_idx], proba)
try:
roc = roc_auc_score(y_arr[val_idx], proba)
except Exception:
roc = float('nan')
cm = confusion_matrix(y_arr[val_idx], preds).tolist()
fold_metrics.append({
'fold': fold,
'precision': float(prec),
'recall': float(rec),
'f1': float(f1),
'pr_auc': float(pr_auc),
'roc_auc': float(roc),
'confusion_matrix': cm
})
models.append(clf)
logger.info('Fold %d metrics: prec=%.3f rec=%.3f f1=%.3f pr_auc=%.3f', fold, prec, rec, f1, pr_auc)
# pick best model by f1
best_idx = int(np.argmax([m['f1'] for m in fold_metrics]))
best_model = models[best_idx]
# aggregate metrics
agg = {}
for k in ['precision', 'recall', 'f1', 'pr_auc', 'roc_auc']:
vals = [fm[k] for fm in fold_metrics if not np.isnan(fm[k])]
agg[f'{k}_mean'] = float(np.mean(vals)) if vals else float('nan')
agg[f'{k}_std'] = float(np.std(vals)) if vals else float('nan')
results = {'folds': fold_metrics, 'aggregate': agg}
# compute overall PR curve from CV validation outputs
all_val_probas = np.array(all_val_probas)
all_val_labels = np.array(all_val_labels)
precision, recall, pr_thresholds = precision_recall_curve(all_val_labels, all_val_probas)
results['pr_curve'] = {
'precision': precision.tolist(),
'recall': recall.tolist(),
'thresholds': pr_thresholds.tolist()
}
# artifact hygiene: directories
ts = datetime.utcnow().isoformat() + 'Z'
results['timestamp'] = ts
results['seed'] = int(seed)
results['features'] = list(X.columns)
results['cv_validation_counts'] = int(len(all_val_labels))
models_dir = os.path.join('models')
metrics_dir = os.path.join('metrics')
os.makedirs(models_dir, exist_ok=True)
os.makedirs(metrics_dir, exist_ok=True)
model_path = os.path.join(models_dir, 'rf_model.joblib')
metrics_path = os.path.join(metrics_dir, 'training_metrics.json')
joblib.dump(best_model, model_path)
with open(metrics_path, 'w') as fh:
json.dump(results, fh, indent=2)
logger.info('Training complete. Metrics saved to %s, model saved to %s', metrics_path, model_path)
return best_model, results, X, y, all_val_probas, all_val_labels, encoder