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Upload 9 files
Browse files- Lab_report_analysis.py +72 -0
- README.md +261 -10
- debug_analyzer.py +43 -0
- index.html +585 -0
- lab_analyzer.py +178 -0
- main.py +161 -0
- models.py +27 -0
- requirements.txt +14 -0
- test_client.py +83 -0
Lab_report_analysis.py
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import base64
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import os
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from huggingface_hub import InferenceClient
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from tkinter import Tk, filedialog
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def select_image():
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root = Tk()
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root.withdraw()
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file_path = filedialog.askopenfilename(
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title="Select a Lab Report Image",
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filetypes=[("Image Files", "*.jpg;*.jpeg;*.png;*.bmp;*.tiff;*.webp")]
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)
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return file_path
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client = InferenceClient(
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provider="nebius",
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api_key=os.getenv("HUGGINGFACE_API_KEY", "your-api-key-here"),
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)
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img = select_image()
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with open(img, "rb") as f:
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image_bytes = f.read()
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image_b64 = base64.b64encode(image_bytes).decode("utf-8")
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prompt = """
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You are a medical analysis assistant.
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Analyze the following lab report image and give a structured, professional summary
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following these steps:
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1. Extract the results (with normal ranges if available).
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2. Highlight abnormal values clearly.
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3. Explain what the results suggest in simple terms.
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4. Provide an overall summary of health findings.
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5. End with the disclaimer:
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"This analysis is for educational purposes only and should not replace professional medical advice."
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If the image is unreadable, respond: "The image text is unclear."
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"""
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completion = client.chat.completions.create(
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model="google/gemma-3-27b-it",
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messages=[
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{
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"role": "user",
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"content": [
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{"type": "text", "text": """
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Analyze this lab report and give me a brief, structured summary.
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Format your response as follows:
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Summary: (2–3 sentences explaining what the report shows)
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Key Findings: (3–5 bullet points with main abnormal or notable values)
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Interpretation: (1–2 sentences explaining what the findings suggest)
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Note: (One line disclaimer that it’s not medical advice)
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Keep it short, clear, and professional — like a medical summary written for quick review.
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"""},
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{
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"type": "image_url",
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"image_url": {
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"url": f"data:image/jpeg;base64,{image_b64}"
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}
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}
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]
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}
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],
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)
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print(completion.choices[0].message.content.strip())
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README.md
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# Lab Report Analysis API
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A FastAPI-based web service for analyzing lab report images using AI. This service accepts lab report images and provides structured medical analysis with key findings, interpretations, and health insights.
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## Features
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- 🖼️ Image upload support (JPG, PNG, BMP, TIFF, WEBP)
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- 🔍 AI-powered lab report analysis
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- 📊 Structured response with summary, key findings, and interpretation
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- 🌐 RESTful API with automatic documentation
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- 🧪 Built-in test client and web interface
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- ⚡ Async processing for better performance
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## Project Structure
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```
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Lab_analysis/
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├── main.py # FastAPI application
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├── lab_analyzer.py # Core analysis logic
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├── models.py # Pydantic models
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├── test_client.py # API test client
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├── index.html # Web interface
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├── requirements.txt # Dependencies
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├── Lab_report_analysis.py # Original script
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└── README.md # This file
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```
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## Installation
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1. **Clone or navigate to the project directory:**
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```bash
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cd "e:\E-JUST Assignments\Projects\HealthCare\Lab_analysis"
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```
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2. **Create a virtual environment (recommended):**
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```bash
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python -m venv venv
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venv\Scripts\activate # On Windows
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```
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3. **Install dependencies:**
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```bash
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pip install -r requirements.txt
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```
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## Running the API
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### Method 1: Using Python directly
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```bash
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python main.py
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```
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### Method 2: Using Uvicorn
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```bash
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uvicorn main:app --host 0.0.0.0 --port 8000 --reload
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```
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The API will be available at:
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- **API Endpoints**: http://localhost:8000
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- **Interactive Docs**: http://localhost:8000/docs
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- **ReDoc**: http://localhost:8000/redoc
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## API Endpoints
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### Health Check
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- **GET** `/health`
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- Returns service status
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### Analyze Lab Report (File Upload)
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- **POST** `/analyze`
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- Upload an image file for analysis
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- Accepts: `multipart/form-data` with `file` field
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### Analyze Lab Report (Base64)
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- **POST** `/analyze-base64`
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- Send base64 encoded image for analysis
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- Accepts: JSON with `image` field containing base64 string
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## Usage Examples
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### Using cURL
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1. **Health check:**
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```bash
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curl http://localhost:8000/health
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```
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2. **Analyze image file:**
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```bash
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curl -X POST "http://localhost:8000/analyze" \
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-H "accept: application/json" \
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-H "Content-Type: multipart/form-data" \
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-F "file=@your_lab_report.jpg"
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```
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3. **Analyze base64 image:**
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```bash
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curl -X POST "http://localhost:8000/analyze-base64" \
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-H "Content-Type: application/json" \
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-d '{"image": "your_base64_encoded_image_here"}'
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```
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### Using Python Test Client
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```python
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from test_client import LabReportAPIClient
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client = LabReportAPIClient()
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# Health check
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health = client.health_check()
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print(health)
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# Analyze image
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result = client.analyze_image_file("path/to/your/lab_report.jpg")
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print(result)
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```
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### Using the Web Interface
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1. Start the API server
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2. Open `index.html` in your web browser
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3. Drag and drop or select a lab report image
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4. Click "Analyze Report" to get results
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## Response Format
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Successful analysis returns:
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```json
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{
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"success": true,
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"filename": "lab_report.jpg",
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"analysis": {
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"error": false,
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"summary": "Brief summary of the lab report",
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"key_findings": ["Finding 1", "Finding 2", "Finding 3"],
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"interpretation": "Medical interpretation",
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"note": "Disclaimer about medical advice",
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"raw_response": "Complete AI response"
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}
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}
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```
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## Configuration
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| 156 |
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### Environment Variables
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| 158 |
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| 159 |
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You can set these environment variables to customize the behavior:
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| 160 |
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- `API_HOST`: Host to bind to (default: "0.0.0.0")
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- `API_PORT`: Port to bind to (default: 8000)
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| 163 |
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- `HF_API_KEY`: Hugging Face API key (currently hardcoded in `lab_analyzer.py`)
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| 165 |
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### Updating API Key
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| 166 |
+
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| 167 |
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To use your own Hugging Face API key, modify the `lab_analyzer.py` file:
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| 168 |
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| 169 |
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```python
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| 170 |
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self.client = InferenceClient(
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| 171 |
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provider="nebius",
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| 172 |
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api_key="your_api_key_here", # Replace with your API key
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| 173 |
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)
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| 174 |
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```
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| 175 |
+
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| 176 |
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## Development
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| 177 |
+
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| 178 |
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### Running in Development Mode
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| 179 |
+
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| 180 |
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```bash
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| 181 |
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uvicorn main:app --reload --host 0.0.0.0 --port 8000
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| 182 |
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```
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| 183 |
+
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| 184 |
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### Testing
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| 185 |
+
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| 186 |
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Run the test client:
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| 187 |
+
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| 188 |
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```bash
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| 189 |
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python test_client.py
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| 190 |
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```
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| 191 |
+
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| 192 |
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### Adding New Features
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| 193 |
+
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| 194 |
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1. Add new endpoints to `main.py`
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| 195 |
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2. Update models in `models.py` if needed
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| 196 |
+
3. Extend the analyzer in `lab_analyzer.py`
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| 197 |
+
4. Update documentation
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| 198 |
+
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| 199 |
+
## Deployment
|
| 200 |
+
|
| 201 |
+
### Docker (Optional)
|
| 202 |
+
|
| 203 |
+
Create a `Dockerfile`:
|
| 204 |
+
|
| 205 |
+
```dockerfile
|
| 206 |
+
FROM python:3.9-slim
|
| 207 |
+
|
| 208 |
+
WORKDIR /app
|
| 209 |
+
COPY requirements.txt .
|
| 210 |
+
RUN pip install -r requirements.txt
|
| 211 |
+
|
| 212 |
+
COPY . .
|
| 213 |
+
|
| 214 |
+
EXPOSE 8000
|
| 215 |
+
CMD ["uvicorn", "main:app", "--host", "0.0.0.0", "--port", "8000"]
|
| 216 |
+
```
|
| 217 |
+
|
| 218 |
+
Build and run:
|
| 219 |
+
|
| 220 |
+
```bash
|
| 221 |
+
docker build -t lab-analysis-api .
|
| 222 |
+
docker run -p 8000:8000 lab-analysis-api
|
| 223 |
+
```
|
| 224 |
+
|
| 225 |
+
### Production Considerations
|
| 226 |
+
|
| 227 |
+
- Use environment variables for API keys
|
| 228 |
+
- Set up proper CORS origins
|
| 229 |
+
- Add rate limiting
|
| 230 |
+
- Use HTTPS
|
| 231 |
+
- Add authentication if needed
|
| 232 |
+
- Set up logging and monitoring
|
| 233 |
+
|
| 234 |
+
## Troubleshooting
|
| 235 |
+
|
| 236 |
+
### Common Issues
|
| 237 |
+
|
| 238 |
+
1. **Import errors**: Make sure all dependencies are installed
|
| 239 |
+
2. **Port conflicts**: Change the port in the uvicorn command
|
| 240 |
+
3. **API key issues**: Verify your Hugging Face API key is valid
|
| 241 |
+
4. **Image format errors**: Ensure images are in supported formats
|
| 242 |
+
|
| 243 |
+
### Logs
|
| 244 |
+
|
| 245 |
+
The application logs important events. Check console output for debugging information.
|
| 246 |
+
|
| 247 |
+
## License
|
| 248 |
+
|
| 249 |
+
This project is for educational purposes. Please ensure you have proper licenses for any AI models used.
|
| 250 |
+
|
| 251 |
+
## Contributing
|
| 252 |
+
|
| 253 |
+
1. Fork the repository
|
| 254 |
+
2. Create a feature branch
|
| 255 |
+
3. Make your changes
|
| 256 |
+
4. Test thoroughly
|
| 257 |
+
5. Submit a pull request
|
| 258 |
+
|
| 259 |
+
---
|
| 260 |
+
|
| 261 |
+
**Note**: This analysis is for educational purposes only and should not replace professional medical advice.
|
debug_analyzer.py
ADDED
|
@@ -0,0 +1,43 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import asyncio
|
| 2 |
+
import sys
|
| 3 |
+
import os
|
| 4 |
+
|
| 5 |
+
# Add current directory to Python path
|
| 6 |
+
sys.path.append(os.path.dirname(os.path.abspath(__file__)))
|
| 7 |
+
|
| 8 |
+
from lab_analyzer import LabReportAnalyzer
|
| 9 |
+
|
| 10 |
+
async def test_analyzer():
|
| 11 |
+
"""Test the analyzer with a dummy base64 string to see the response structure"""
|
| 12 |
+
analyzer = LabReportAnalyzer()
|
| 13 |
+
|
| 14 |
+
# Create a small dummy base64 image (1x1 white pixel PNG)
|
| 15 |
+
dummy_image_b64 = "iVBORw0KGgoAAAANSUhEUgAAAAEAAAABCAYAAAAfFcSJAAAADUlEQVR42mP8/5+hHgAHggJ/PchI7wAAAABJRU5ErkJggg=="
|
| 16 |
+
|
| 17 |
+
print("Testing analyzer with dummy image...")
|
| 18 |
+
try:
|
| 19 |
+
result = await analyzer.analyze_report(dummy_image_b64)
|
| 20 |
+
print("\nAnalysis result structure:")
|
| 21 |
+
print("=" * 50)
|
| 22 |
+
print(f"Result type: {type(result)}")
|
| 23 |
+
print(f"Keys: {result.keys() if isinstance(result, dict) else 'Not a dict'}")
|
| 24 |
+
print("\nFull result:")
|
| 25 |
+
print(result)
|
| 26 |
+
|
| 27 |
+
# Check if it has the expected structure
|
| 28 |
+
if isinstance(result, dict):
|
| 29 |
+
print("\nStructure analysis:")
|
| 30 |
+
print(f"Has 'error' key: {'error' in result}")
|
| 31 |
+
print(f"Has 'summary' key: {'summary' in result}")
|
| 32 |
+
print(f"Has 'key_findings' key: {'key_findings' in result}")
|
| 33 |
+
print(f"Has 'interpretation' key: {'interpretation' in result}")
|
| 34 |
+
print(f"Has 'note' key: {'note' in result}")
|
| 35 |
+
print(f"Has 'raw_response' key: {'raw_response' in result}")
|
| 36 |
+
|
| 37 |
+
except Exception as e:
|
| 38 |
+
print(f"Error testing analyzer: {str(e)}")
|
| 39 |
+
import traceback
|
| 40 |
+
traceback.print_exc()
|
| 41 |
+
|
| 42 |
+
if __name__ == "__main__":
|
| 43 |
+
asyncio.run(test_analyzer())
|
index.html
ADDED
|
@@ -0,0 +1,585 @@
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|
|
| 1 |
+
<!DOCTYPE html>
|
| 2 |
+
<html lang="en">
|
| 3 |
+
<head>
|
| 4 |
+
<meta charset="UTF-8" />
|
| 5 |
+
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
|
| 6 |
+
<title>Lab Report Analysis</title>
|
| 7 |
+
<style>
|
| 8 |
+
* {
|
| 9 |
+
margin: 0;
|
| 10 |
+
padding: 0;
|
| 11 |
+
box-sizing: border-box;
|
| 12 |
+
}
|
| 13 |
+
|
| 14 |
+
body {
|
| 15 |
+
font-family: "Segoe UI", Tahoma, Geneva, Verdana, sans-serif;
|
| 16 |
+
background: linear-gradient(135deg, #667eea 0%, #764ba2 100%);
|
| 17 |
+
min-height: 100vh;
|
| 18 |
+
padding: 20px;
|
| 19 |
+
}
|
| 20 |
+
|
| 21 |
+
.container {
|
| 22 |
+
max-width: 900px;
|
| 23 |
+
margin: 0 auto;
|
| 24 |
+
background: white;
|
| 25 |
+
border-radius: 15px;
|
| 26 |
+
box-shadow: 0 10px 30px rgba(0, 0, 0, 0.2);
|
| 27 |
+
overflow: hidden;
|
| 28 |
+
}
|
| 29 |
+
|
| 30 |
+
.header {
|
| 31 |
+
background: linear-gradient(135deg, #4facfe 0%, #00f2fe 100%);
|
| 32 |
+
color: white;
|
| 33 |
+
text-align: center;
|
| 34 |
+
padding: 30px 20px;
|
| 35 |
+
}
|
| 36 |
+
|
| 37 |
+
.header h1 {
|
| 38 |
+
font-size: 2.5rem;
|
| 39 |
+
margin-bottom: 10px;
|
| 40 |
+
}
|
| 41 |
+
|
| 42 |
+
.header p {
|
| 43 |
+
font-size: 1.1rem;
|
| 44 |
+
opacity: 0.9;
|
| 45 |
+
}
|
| 46 |
+
|
| 47 |
+
.content {
|
| 48 |
+
padding: 40px;
|
| 49 |
+
}
|
| 50 |
+
|
| 51 |
+
.upload-section {
|
| 52 |
+
text-align: center;
|
| 53 |
+
margin-bottom: 30px;
|
| 54 |
+
}
|
| 55 |
+
|
| 56 |
+
.upload-area {
|
| 57 |
+
border: 3px dashed #4facfe;
|
| 58 |
+
border-radius: 15px;
|
| 59 |
+
padding: 50px 20px;
|
| 60 |
+
margin-bottom: 20px;
|
| 61 |
+
background: #f8fbff;
|
| 62 |
+
transition: all 0.3s ease;
|
| 63 |
+
cursor: pointer;
|
| 64 |
+
}
|
| 65 |
+
|
| 66 |
+
.upload-area:hover {
|
| 67 |
+
background: #e8f4ff;
|
| 68 |
+
border-color: #0084ff;
|
| 69 |
+
}
|
| 70 |
+
|
| 71 |
+
.upload-area.dragover {
|
| 72 |
+
background: #e8f4ff;
|
| 73 |
+
border-color: #0084ff;
|
| 74 |
+
transform: scale(1.02);
|
| 75 |
+
}
|
| 76 |
+
|
| 77 |
+
.upload-icon {
|
| 78 |
+
font-size: 4rem;
|
| 79 |
+
color: #4facfe;
|
| 80 |
+
margin-bottom: 20px;
|
| 81 |
+
}
|
| 82 |
+
|
| 83 |
+
.upload-text {
|
| 84 |
+
font-size: 1.2rem;
|
| 85 |
+
color: #666;
|
| 86 |
+
margin-bottom: 20px;
|
| 87 |
+
}
|
| 88 |
+
|
| 89 |
+
.file-input {
|
| 90 |
+
display: none;
|
| 91 |
+
}
|
| 92 |
+
|
| 93 |
+
.btn {
|
| 94 |
+
background: linear-gradient(135deg, #4facfe 0%, #00f2fe 100%);
|
| 95 |
+
color: white;
|
| 96 |
+
border: none;
|
| 97 |
+
padding: 15px 30px;
|
| 98 |
+
border-radius: 50px;
|
| 99 |
+
font-size: 1.1rem;
|
| 100 |
+
font-weight: 600;
|
| 101 |
+
cursor: pointer;
|
| 102 |
+
transition: all 0.3s ease;
|
| 103 |
+
margin: 10px;
|
| 104 |
+
}
|
| 105 |
+
|
| 106 |
+
.btn:hover {
|
| 107 |
+
transform: translateY(-2px);
|
| 108 |
+
box-shadow: 0 5px 15px rgba(79, 172, 254, 0.4);
|
| 109 |
+
}
|
| 110 |
+
|
| 111 |
+
.btn:disabled {
|
| 112 |
+
background: #ccc;
|
| 113 |
+
cursor: not-allowed;
|
| 114 |
+
transform: none;
|
| 115 |
+
box-shadow: none;
|
| 116 |
+
}
|
| 117 |
+
|
| 118 |
+
.preview-section {
|
| 119 |
+
margin: 20px 0;
|
| 120 |
+
text-align: center;
|
| 121 |
+
}
|
| 122 |
+
|
| 123 |
+
.preview-image {
|
| 124 |
+
max-width: 100%;
|
| 125 |
+
max-height: 300px;
|
| 126 |
+
border-radius: 10px;
|
| 127 |
+
box-shadow: 0 5px 15px rgba(0, 0, 0, 0.1);
|
| 128 |
+
margin-bottom: 15px;
|
| 129 |
+
}
|
| 130 |
+
|
| 131 |
+
.results-section {
|
| 132 |
+
margin-top: 30px;
|
| 133 |
+
display: none;
|
| 134 |
+
}
|
| 135 |
+
|
| 136 |
+
.loading {
|
| 137 |
+
text-align: center;
|
| 138 |
+
padding: 40px;
|
| 139 |
+
color: #4facfe;
|
| 140 |
+
}
|
| 141 |
+
|
| 142 |
+
.loading-spinner {
|
| 143 |
+
border: 4px solid #f3f3f3;
|
| 144 |
+
border-top: 4px solid #4facfe;
|
| 145 |
+
border-radius: 50%;
|
| 146 |
+
width: 50px;
|
| 147 |
+
height: 50px;
|
| 148 |
+
animation: spin 1s linear infinite;
|
| 149 |
+
margin: 0 auto 20px;
|
| 150 |
+
}
|
| 151 |
+
|
| 152 |
+
@keyframes spin {
|
| 153 |
+
0% {
|
| 154 |
+
transform: rotate(0deg);
|
| 155 |
+
}
|
| 156 |
+
100% {
|
| 157 |
+
transform: rotate(360deg);
|
| 158 |
+
}
|
| 159 |
+
}
|
| 160 |
+
|
| 161 |
+
.results-content {
|
| 162 |
+
background: #f8fbff;
|
| 163 |
+
border-radius: 15px;
|
| 164 |
+
padding: 30px;
|
| 165 |
+
border-left: 5px solid #4facfe;
|
| 166 |
+
}
|
| 167 |
+
|
| 168 |
+
.result-title {
|
| 169 |
+
color: #333;
|
| 170 |
+
font-size: 1.8rem;
|
| 171 |
+
margin-bottom: 25px;
|
| 172 |
+
display: flex;
|
| 173 |
+
align-items: center;
|
| 174 |
+
gap: 10px;
|
| 175 |
+
}
|
| 176 |
+
|
| 177 |
+
.analysis-block {
|
| 178 |
+
background: white;
|
| 179 |
+
border-radius: 10px;
|
| 180 |
+
padding: 20px;
|
| 181 |
+
margin-bottom: 20px;
|
| 182 |
+
box-shadow: 0 2px 10px rgba(0, 0, 0, 0.05);
|
| 183 |
+
}
|
| 184 |
+
|
| 185 |
+
.analysis-block h3 {
|
| 186 |
+
color: #4facfe;
|
| 187 |
+
font-size: 1.3rem;
|
| 188 |
+
margin-bottom: 15px;
|
| 189 |
+
display: flex;
|
| 190 |
+
align-items: center;
|
| 191 |
+
gap: 10px;
|
| 192 |
+
}
|
| 193 |
+
|
| 194 |
+
.analysis-block p {
|
| 195 |
+
color: #555;
|
| 196 |
+
line-height: 1.6;
|
| 197 |
+
font-size: 1rem;
|
| 198 |
+
}
|
| 199 |
+
|
| 200 |
+
.findings-list {
|
| 201 |
+
list-style: none;
|
| 202 |
+
padding: 0;
|
| 203 |
+
}
|
| 204 |
+
|
| 205 |
+
.findings-list li {
|
| 206 |
+
background: #f0f8ff;
|
| 207 |
+
margin: 10px 0;
|
| 208 |
+
padding: 15px;
|
| 209 |
+
border-radius: 8px;
|
| 210 |
+
border-left: 4px solid #4facfe;
|
| 211 |
+
color: #333;
|
| 212 |
+
}
|
| 213 |
+
|
| 214 |
+
.findings-list li:before {
|
| 215 |
+
content: "•";
|
| 216 |
+
color: #4facfe;
|
| 217 |
+
font-weight: bold;
|
| 218 |
+
margin-right: 10px;
|
| 219 |
+
}
|
| 220 |
+
|
| 221 |
+
.error-message {
|
| 222 |
+
background: #ffe6e6;
|
| 223 |
+
color: #d63031;
|
| 224 |
+
padding: 20px;
|
| 225 |
+
border-radius: 10px;
|
| 226 |
+
border-left: 5px solid #d63031;
|
| 227 |
+
margin: 20px 0;
|
| 228 |
+
}
|
| 229 |
+
|
| 230 |
+
.success-message {
|
| 231 |
+
background: #e6ffe6;
|
| 232 |
+
color: #00b894;
|
| 233 |
+
padding: 20px;
|
| 234 |
+
border-radius: 10px;
|
| 235 |
+
border-left: 5px solid #00b894;
|
| 236 |
+
margin: 20px 0;
|
| 237 |
+
}
|
| 238 |
+
|
| 239 |
+
.disclaimer {
|
| 240 |
+
background: #fff3cd;
|
| 241 |
+
color: #856404;
|
| 242 |
+
padding: 15px;
|
| 243 |
+
border-radius: 8px;
|
| 244 |
+
border: 1px solid #ffeaa7;
|
| 245 |
+
margin-top: 20px;
|
| 246 |
+
font-style: italic;
|
| 247 |
+
}
|
| 248 |
+
|
| 249 |
+
.raw-response {
|
| 250 |
+
background: #f8f9fa;
|
| 251 |
+
border: 1px solid #e9ecef;
|
| 252 |
+
border-radius: 8px;
|
| 253 |
+
padding: 15px;
|
| 254 |
+
font-family: "Courier New", monospace;
|
| 255 |
+
font-size: 0.9rem;
|
| 256 |
+
white-space: pre-wrap;
|
| 257 |
+
max-height: 300px;
|
| 258 |
+
overflow-y: auto;
|
| 259 |
+
}
|
| 260 |
+
|
| 261 |
+
@media (max-width: 768px) {
|
| 262 |
+
.header h1 {
|
| 263 |
+
font-size: 2rem;
|
| 264 |
+
}
|
| 265 |
+
|
| 266 |
+
.content {
|
| 267 |
+
padding: 20px;
|
| 268 |
+
}
|
| 269 |
+
|
| 270 |
+
.upload-area {
|
| 271 |
+
padding: 30px 15px;
|
| 272 |
+
}
|
| 273 |
+
}
|
| 274 |
+
</style>
|
| 275 |
+
</head>
|
| 276 |
+
<body>
|
| 277 |
+
<div class="container">
|
| 278 |
+
<div class="header">
|
| 279 |
+
<h1>🔬 Lab Report Analysis</h1>
|
| 280 |
+
<p>AI-powered medical lab report analysis service</p>
|
| 281 |
+
</div>
|
| 282 |
+
|
| 283 |
+
<div class="content">
|
| 284 |
+
<div class="upload-section">
|
| 285 |
+
<div
|
| 286 |
+
class="upload-area"
|
| 287 |
+
onclick="document.getElementById('fileInput').click()"
|
| 288 |
+
>
|
| 289 |
+
<div class="upload-icon">📄</div>
|
| 290 |
+
<div class="upload-text">
|
| 291 |
+
Drag and drop your lab report image here<br />
|
| 292 |
+
or click to select a file
|
| 293 |
+
</div>
|
| 294 |
+
<div class="supported-formats">
|
| 295 |
+
<small>Supports: JPG, PNG, BMP, TIFF, WEBP</small>
|
| 296 |
+
</div>
|
| 297 |
+
</div>
|
| 298 |
+
|
| 299 |
+
<input
|
| 300 |
+
type="file"
|
| 301 |
+
id="fileInput"
|
| 302 |
+
class="file-input"
|
| 303 |
+
accept="image/*"
|
| 304 |
+
/>
|
| 305 |
+
|
| 306 |
+
<button
|
| 307 |
+
class="btn"
|
| 308 |
+
id="analyzeBtn"
|
| 309 |
+
disabled
|
| 310 |
+
onclick="analyzeReport()"
|
| 311 |
+
>
|
| 312 |
+
🔍 Analyze Lab Report
|
| 313 |
+
</button>
|
| 314 |
+
</div>
|
| 315 |
+
|
| 316 |
+
<div class="preview-section" id="previewSection" style="display: none">
|
| 317 |
+
<h3>Selected File:</h3>
|
| 318 |
+
<div id="imagePreview"></div>
|
| 319 |
+
</div>
|
| 320 |
+
|
| 321 |
+
<div class="results-section" id="resultsSection">
|
| 322 |
+
<div class="loading" id="loadingDiv" style="display: none">
|
| 323 |
+
<div class="loading-spinner"></div>
|
| 324 |
+
<h3>Analyzing your lab report...</h3>
|
| 325 |
+
<p>Please wait while our AI processes your image</p>
|
| 326 |
+
</div>
|
| 327 |
+
|
| 328 |
+
<div id="resultsContent"></div>
|
| 329 |
+
</div>
|
| 330 |
+
</div>
|
| 331 |
+
</div>
|
| 332 |
+
|
| 333 |
+
<script>
|
| 334 |
+
const API_URL = "http://localhost:8000";
|
| 335 |
+
let selectedFile = null;
|
| 336 |
+
|
| 337 |
+
// Get DOM elements
|
| 338 |
+
const fileInput = document.getElementById("fileInput");
|
| 339 |
+
const uploadArea = document.querySelector(".upload-area");
|
| 340 |
+
const analyzeBtn = document.getElementById("analyzeBtn");
|
| 341 |
+
const previewSection = document.getElementById("previewSection");
|
| 342 |
+
const imagePreview = document.getElementById("imagePreview");
|
| 343 |
+
const resultsSection = document.getElementById("resultsSection");
|
| 344 |
+
const loadingDiv = document.getElementById("loadingDiv");
|
| 345 |
+
const resultsContent = document.getElementById("resultsContent");
|
| 346 |
+
|
| 347 |
+
// Event listeners
|
| 348 |
+
fileInput.addEventListener("change", handleFileSelect);
|
| 349 |
+
uploadArea.addEventListener("dragover", handleDragOver);
|
| 350 |
+
uploadArea.addEventListener("dragleave", handleDragLeave);
|
| 351 |
+
uploadArea.addEventListener("drop", handleDrop);
|
| 352 |
+
|
| 353 |
+
function handleFileSelect(event) {
|
| 354 |
+
const file = event.target.files[0];
|
| 355 |
+
if (file && file.type.startsWith("image/")) {
|
| 356 |
+
selectedFile = file;
|
| 357 |
+
showPreview(file);
|
| 358 |
+
analyzeBtn.disabled = false;
|
| 359 |
+
} else {
|
| 360 |
+
showError("Please select a valid image file");
|
| 361 |
+
}
|
| 362 |
+
}
|
| 363 |
+
|
| 364 |
+
function handleDragOver(event) {
|
| 365 |
+
event.preventDefault();
|
| 366 |
+
uploadArea.classList.add("dragover");
|
| 367 |
+
}
|
| 368 |
+
|
| 369 |
+
function handleDragLeave(event) {
|
| 370 |
+
event.preventDefault();
|
| 371 |
+
uploadArea.classList.remove("dragover");
|
| 372 |
+
}
|
| 373 |
+
|
| 374 |
+
function handleDrop(event) {
|
| 375 |
+
event.preventDefault();
|
| 376 |
+
uploadArea.classList.remove("dragover");
|
| 377 |
+
|
| 378 |
+
const files = event.dataTransfer.files;
|
| 379 |
+
if (files.length > 0 && files[0].type.startsWith("image/")) {
|
| 380 |
+
selectedFile = files[0];
|
| 381 |
+
showPreview(files[0]);
|
| 382 |
+
analyzeBtn.disabled = false;
|
| 383 |
+
} else {
|
| 384 |
+
showError("Please drop a valid image file");
|
| 385 |
+
}
|
| 386 |
+
}
|
| 387 |
+
|
| 388 |
+
function showPreview(file) {
|
| 389 |
+
const reader = new FileReader();
|
| 390 |
+
reader.onload = function (e) {
|
| 391 |
+
imagePreview.innerHTML = `
|
| 392 |
+
<img src="${
|
| 393 |
+
e.target.result
|
| 394 |
+
}" alt="Lab Report Preview" class="preview-image">
|
| 395 |
+
<p><strong>File:</strong> ${file.name} (${(
|
| 396 |
+
file.size /
|
| 397 |
+
1024 /
|
| 398 |
+
1024
|
| 399 |
+
).toFixed(2)} MB)</p>
|
| 400 |
+
`;
|
| 401 |
+
previewSection.style.display = "block";
|
| 402 |
+
};
|
| 403 |
+
reader.readAsDataURL(file);
|
| 404 |
+
}
|
| 405 |
+
|
| 406 |
+
async function analyzeReport() {
|
| 407 |
+
if (!selectedFile) {
|
| 408 |
+
showError("Please select an image file first");
|
| 409 |
+
return;
|
| 410 |
+
}
|
| 411 |
+
|
| 412 |
+
// Show loading
|
| 413 |
+
resultsSection.style.display = "block";
|
| 414 |
+
loadingDiv.style.display = "block";
|
| 415 |
+
resultsContent.innerHTML = "";
|
| 416 |
+
analyzeBtn.disabled = true;
|
| 417 |
+
|
| 418 |
+
try {
|
| 419 |
+
console.log("🔄 Sending file to API:", selectedFile.name);
|
| 420 |
+
|
| 421 |
+
const formData = new FormData();
|
| 422 |
+
formData.append("file", selectedFile);
|
| 423 |
+
|
| 424 |
+
const response = await fetch(`${API_URL}/analyze`, {
|
| 425 |
+
method: "POST",
|
| 426 |
+
body: formData,
|
| 427 |
+
});
|
| 428 |
+
|
| 429 |
+
console.log("📡 Response status:", response.status);
|
| 430 |
+
const responseData = await response.json();
|
| 431 |
+
console.log("📊 Full response data:", responseData);
|
| 432 |
+
|
| 433 |
+
loadingDiv.style.display = "none";
|
| 434 |
+
|
| 435 |
+
if (response.ok && responseData.success) {
|
| 436 |
+
console.log("✅ Analysis successful, displaying results");
|
| 437 |
+
displayResults(responseData.analysis);
|
| 438 |
+
} else {
|
| 439 |
+
console.error("❌ Analysis failed:", responseData);
|
| 440 |
+
showError(
|
| 441 |
+
responseData.detail || responseData.message || "Analysis failed"
|
| 442 |
+
);
|
| 443 |
+
}
|
| 444 |
+
} catch (error) {
|
| 445 |
+
console.error("🚨 Connection error:", error);
|
| 446 |
+
loadingDiv.style.display = "none";
|
| 447 |
+
showError(
|
| 448 |
+
`Connection error: ${error.message}. Make sure the API server is running on http://localhost:8000`
|
| 449 |
+
);
|
| 450 |
+
}
|
| 451 |
+
|
| 452 |
+
analyzeBtn.disabled = false;
|
| 453 |
+
}
|
| 454 |
+
|
| 455 |
+
function displayResults(analysis) {
|
| 456 |
+
console.log("🎨 Displaying analysis results:", analysis);
|
| 457 |
+
|
| 458 |
+
if (analysis.error) {
|
| 459 |
+
showError(analysis.message || "Analysis failed");
|
| 460 |
+
return;
|
| 461 |
+
}
|
| 462 |
+
|
| 463 |
+
let html = `
|
| 464 |
+
<div class="results-content">
|
| 465 |
+
<h2 class="result-title">📋 Analysis Results</h2>
|
| 466 |
+
`;
|
| 467 |
+
|
| 468 |
+
// Summary
|
| 469 |
+
if (analysis.summary && analysis.summary.trim()) {
|
| 470 |
+
console.log("📝 Adding summary:", analysis.summary);
|
| 471 |
+
html += `
|
| 472 |
+
<div class="analysis-block">
|
| 473 |
+
<h3>📝 Summary</h3>
|
| 474 |
+
<p>${analysis.summary}</p>
|
| 475 |
+
</div>
|
| 476 |
+
`;
|
| 477 |
+
}
|
| 478 |
+
|
| 479 |
+
// Key Findings
|
| 480 |
+
if (
|
| 481 |
+
analysis.key_findings &&
|
| 482 |
+
Array.isArray(analysis.key_findings) &&
|
| 483 |
+
analysis.key_findings.length > 0
|
| 484 |
+
) {
|
| 485 |
+
console.log("🔍 Adding key findings:", analysis.key_findings);
|
| 486 |
+
html += `
|
| 487 |
+
<div class="analysis-block">
|
| 488 |
+
<h3>🔍 Key Findings</h3>
|
| 489 |
+
<ul class="findings-list">
|
| 490 |
+
${analysis.key_findings
|
| 491 |
+
.map((finding) => `<li>${finding}</li>`)
|
| 492 |
+
.join("")}
|
| 493 |
+
</ul>
|
| 494 |
+
</div>
|
| 495 |
+
`;
|
| 496 |
+
}
|
| 497 |
+
|
| 498 |
+
// Interpretation
|
| 499 |
+
if (analysis.interpretation && analysis.interpretation.trim()) {
|
| 500 |
+
console.log("💡 Adding interpretation:", analysis.interpretation);
|
| 501 |
+
html += `
|
| 502 |
+
<div class="analysis-block">
|
| 503 |
+
<h3>💡 Interpretation</h3>
|
| 504 |
+
<p>${analysis.interpretation}</p>
|
| 505 |
+
</div>
|
| 506 |
+
`;
|
| 507 |
+
}
|
| 508 |
+
|
| 509 |
+
// Note/Disclaimer
|
| 510 |
+
if (analysis.note && analysis.note.trim()) {
|
| 511 |
+
console.log("⚠️ Adding note:", analysis.note);
|
| 512 |
+
html += `
|
| 513 |
+
<div class="disclaimer">
|
| 514 |
+
<strong>⚠️ Important Note:</strong> ${analysis.note}
|
| 515 |
+
</div>
|
| 516 |
+
`;
|
| 517 |
+
}
|
| 518 |
+
|
| 519 |
+
// If no structured data is available, show raw response
|
| 520 |
+
const hasStructuredData =
|
| 521 |
+
(analysis.summary && analysis.summary.trim()) ||
|
| 522 |
+
(analysis.key_findings && analysis.key_findings.length > 0) ||
|
| 523 |
+
(analysis.interpretation && analysis.interpretation.trim()) ||
|
| 524 |
+
(analysis.note && analysis.note.trim());
|
| 525 |
+
|
| 526 |
+
if (!hasStructuredData) {
|
| 527 |
+
console.log("📄 No structured data found, showing raw response");
|
| 528 |
+
html += `
|
| 529 |
+
<div class="analysis-block">
|
| 530 |
+
<h3>📄 Analysis Result</h3>
|
| 531 |
+
<div class="raw-response">${
|
| 532 |
+
analysis.raw_response ||
|
| 533 |
+
JSON.stringify(analysis, null, 2)
|
| 534 |
+
}</div>
|
| 535 |
+
</div>
|
| 536 |
+
`;
|
| 537 |
+
} else {
|
| 538 |
+
// Always show raw response for debugging
|
| 539 |
+
if (analysis.raw_response) {
|
| 540 |
+
html += `
|
| 541 |
+
<details style="margin-top: 20px;">
|
| 542 |
+
<summary style="cursor: pointer; color: #666; font-size: 0.9rem;">🔧 Show Raw AI Response (Debug)</summary>
|
| 543 |
+
<div class="raw-response" style="margin-top: 10px;">${analysis.raw_response}</div>
|
| 544 |
+
</details>
|
| 545 |
+
`;
|
| 546 |
+
}
|
| 547 |
+
}
|
| 548 |
+
|
| 549 |
+
html += "</div>";
|
| 550 |
+
resultsContent.innerHTML = html;
|
| 551 |
+
console.log("✨ Results displayed successfully");
|
| 552 |
+
}
|
| 553 |
+
|
| 554 |
+
function showError(message) {
|
| 555 |
+
console.error("❌ Showing error:", message);
|
| 556 |
+
resultsContent.innerHTML = `
|
| 557 |
+
<div class="error-message">
|
| 558 |
+
<h3>❌ Error</h3>
|
| 559 |
+
<p>${message}</p>
|
| 560 |
+
</div>
|
| 561 |
+
`;
|
| 562 |
+
resultsSection.style.display = "block";
|
| 563 |
+
}
|
| 564 |
+
|
| 565 |
+
// Check API health on page load
|
| 566 |
+
window.addEventListener("load", async () => {
|
| 567 |
+
try {
|
| 568 |
+
console.log("🏥 Checking API health...");
|
| 569 |
+
const response = await fetch(`${API_URL}/health`);
|
| 570 |
+
if (response.ok) {
|
| 571 |
+
const data = await response.json();
|
| 572 |
+
console.log("✅ API is healthy:", data);
|
| 573 |
+
} else {
|
| 574 |
+
console.warn("⚠️ API health check failed:", response.status);
|
| 575 |
+
}
|
| 576 |
+
} catch (error) {
|
| 577 |
+
console.warn("⚠️ Cannot connect to API:", error.message);
|
| 578 |
+
showError(
|
| 579 |
+
"Cannot connect to the API server. Please make sure the server is running on http://localhost:8000"
|
| 580 |
+
);
|
| 581 |
+
}
|
| 582 |
+
});
|
| 583 |
+
</script>
|
| 584 |
+
</body>
|
| 585 |
+
</html>
|
lab_analyzer.py
ADDED
|
@@ -0,0 +1,178 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import base64
|
| 2 |
+
import os
|
| 3 |
+
from huggingface_hub import InferenceClient
|
| 4 |
+
import asyncio
|
| 5 |
+
from typing import Dict, Any
|
| 6 |
+
import logging
|
| 7 |
+
from dotenv import load_dotenv
|
| 8 |
+
|
| 9 |
+
# Load environment variables from .env file
|
| 10 |
+
load_dotenv()
|
| 11 |
+
|
| 12 |
+
logger = logging.getLogger(__name__)
|
| 13 |
+
|
| 14 |
+
class LabReportAnalyzer:
|
| 15 |
+
"""Lab Report Analysis service using Hugging Face Inference Client"""
|
| 16 |
+
|
| 17 |
+
def __init__(self):
|
| 18 |
+
"""Initialize the analyzer with Hugging Face client"""
|
| 19 |
+
self.client = InferenceClient(
|
| 20 |
+
provider="nebius",
|
| 21 |
+
api_key=os.getenv("HUGGINGFACE_API_KEY", "your-api-key-here"),
|
| 22 |
+
)
|
| 23 |
+
self.model = "google/gemma-3-27b-it"
|
| 24 |
+
|
| 25 |
+
async def analyze_report(self, image_b64: str) -> Dict[str, Any]:
|
| 26 |
+
"""
|
| 27 |
+
Analyze a lab report image and return structured results
|
| 28 |
+
|
| 29 |
+
Args:
|
| 30 |
+
image_b64: Base64 encoded image string
|
| 31 |
+
|
| 32 |
+
Returns:
|
| 33 |
+
Dictionary containing structured analysis results
|
| 34 |
+
"""
|
| 35 |
+
try:
|
| 36 |
+
prompt = self._get_analysis_prompt()
|
| 37 |
+
|
| 38 |
+
# Run the inference in a thread pool to avoid blocking
|
| 39 |
+
loop = asyncio.get_event_loop()
|
| 40 |
+
completion = await loop.run_in_executor(
|
| 41 |
+
None,
|
| 42 |
+
self._run_inference,
|
| 43 |
+
image_b64,
|
| 44 |
+
prompt
|
| 45 |
+
)
|
| 46 |
+
|
| 47 |
+
# Extract and parse the response
|
| 48 |
+
analysis_text = completion.choices[0].message.content.strip()
|
| 49 |
+
|
| 50 |
+
# Parse the structured response
|
| 51 |
+
parsed_result = self._parse_analysis_result(analysis_text)
|
| 52 |
+
|
| 53 |
+
return parsed_result
|
| 54 |
+
|
| 55 |
+
except Exception as e:
|
| 56 |
+
logger.error(f"Error in analyze_report: {str(e)}")
|
| 57 |
+
return {
|
| 58 |
+
"error": True,
|
| 59 |
+
"message": f"Analysis failed: {str(e)}",
|
| 60 |
+
"raw_response": ""
|
| 61 |
+
}
|
| 62 |
+
|
| 63 |
+
def _run_inference(self, image_b64: str, prompt: str):
|
| 64 |
+
"""Run the Hugging Face inference synchronously"""
|
| 65 |
+
return self.client.chat.completions.create(
|
| 66 |
+
model=self.model,
|
| 67 |
+
messages=[
|
| 68 |
+
{
|
| 69 |
+
"role": "user",
|
| 70 |
+
"content": [
|
| 71 |
+
{"type": "text", "text": prompt},
|
| 72 |
+
{
|
| 73 |
+
"type": "image_url",
|
| 74 |
+
"image_url": {
|
| 75 |
+
"url": f"data:image/jpeg;base64,{image_b64}"
|
| 76 |
+
}
|
| 77 |
+
}
|
| 78 |
+
]
|
| 79 |
+
}
|
| 80 |
+
],
|
| 81 |
+
)
|
| 82 |
+
|
| 83 |
+
def _get_analysis_prompt(self) -> str:
|
| 84 |
+
"""Get the structured analysis prompt"""
|
| 85 |
+
return """
|
| 86 |
+
You are a medical analysis assistant.
|
| 87 |
+
|
| 88 |
+
Analyze the following lab report image and give a structured, professional summary
|
| 89 |
+
following these steps:
|
| 90 |
+
|
| 91 |
+
1. Extract the results (with normal ranges if available).
|
| 92 |
+
2. Highlight abnormal values clearly.
|
| 93 |
+
3. Explain what the results suggest in simple terms.
|
| 94 |
+
4. Provide an overall summary of health findings.
|
| 95 |
+
5. End with the disclaimer:
|
| 96 |
+
"This analysis is for educational purposes only and should not replace professional medical advice."
|
| 97 |
+
|
| 98 |
+
If the image is unreadable, respond: "The image text is unclear."
|
| 99 |
+
|
| 100 |
+
Format your response as follows:
|
| 101 |
+
|
| 102 |
+
Summary: (2–3 sentences explaining what the report shows)
|
| 103 |
+
Key Findings: (3–5 bullet points with main abnormal or notable values)
|
| 104 |
+
Interpretation: (1–2 sentences explaining what the findings suggest)
|
| 105 |
+
Note: (One line disclaimer that it's not medical advice)
|
| 106 |
+
|
| 107 |
+
Keep it short, clear, and professional — like a medical summary written for quick review.
|
| 108 |
+
"""
|
| 109 |
+
|
| 110 |
+
def _parse_analysis_result(self, analysis_text: str) -> Dict[str, Any]:
|
| 111 |
+
"""
|
| 112 |
+
Parse the structured analysis result into a dictionary
|
| 113 |
+
|
| 114 |
+
Args:
|
| 115 |
+
analysis_text: Raw analysis text from the model
|
| 116 |
+
|
| 117 |
+
Returns:
|
| 118 |
+
Structured dictionary with parsed components
|
| 119 |
+
"""
|
| 120 |
+
try:
|
| 121 |
+
result = {
|
| 122 |
+
"error": False,
|
| 123 |
+
"summary": "",
|
| 124 |
+
"key_findings": [],
|
| 125 |
+
"interpretation": "",
|
| 126 |
+
"note": "",
|
| 127 |
+
"raw_response": analysis_text
|
| 128 |
+
}
|
| 129 |
+
|
| 130 |
+
# Check if image is unreadable
|
| 131 |
+
if "The image text is unclear" in analysis_text:
|
| 132 |
+
result["error"] = True
|
| 133 |
+
result["message"] = "The image text is unclear or unreadable"
|
| 134 |
+
return result
|
| 135 |
+
|
| 136 |
+
lines = analysis_text.split('\n')
|
| 137 |
+
current_section = None
|
| 138 |
+
|
| 139 |
+
for line in lines:
|
| 140 |
+
line = line.strip()
|
| 141 |
+
if not line:
|
| 142 |
+
continue
|
| 143 |
+
|
| 144 |
+
# Identify sections (handle both plain text and markdown formats)
|
| 145 |
+
if line.startswith('Summary:') or line.startswith('**Summary:**'):
|
| 146 |
+
current_section = 'summary'
|
| 147 |
+
result['summary'] = line.replace('**Summary:**', '').replace('Summary:', '').strip()
|
| 148 |
+
elif line.startswith('Key Findings:') or line.startswith('**Key Findings:**'):
|
| 149 |
+
current_section = 'key_findings'
|
| 150 |
+
elif line.startswith('Interpretation:') or line.startswith('**Interpretation:**'):
|
| 151 |
+
current_section = 'interpretation'
|
| 152 |
+
result['interpretation'] = line.replace('**Interpretation:**', '').replace('Interpretation:', '').strip()
|
| 153 |
+
elif line.startswith('Note:') or line.startswith('**Note:**'):
|
| 154 |
+
current_section = 'note'
|
| 155 |
+
result['note'] = line.replace('**Note:**', '').replace('Note:', '').strip()
|
| 156 |
+
else:
|
| 157 |
+
# Continue previous section
|
| 158 |
+
if current_section == 'summary' and not result['summary']:
|
| 159 |
+
result['summary'] = line
|
| 160 |
+
elif current_section == 'key_findings' and (line.startswith(('•', '-', '*')) or line.strip().startswith('*')):
|
| 161 |
+
# Handle both regular bullets and markdown-style bullets
|
| 162 |
+
clean_line = line.lstrip('•-* ').strip()
|
| 163 |
+
if clean_line:
|
| 164 |
+
result['key_findings'].append(clean_line)
|
| 165 |
+
elif current_section == 'interpretation' and not result['interpretation']:
|
| 166 |
+
result['interpretation'] = line
|
| 167 |
+
elif current_section == 'note' and not result['note']:
|
| 168 |
+
result['note'] = line
|
| 169 |
+
|
| 170 |
+
return result
|
| 171 |
+
|
| 172 |
+
except Exception as e:
|
| 173 |
+
logger.error(f"Error parsing analysis result: {str(e)}")
|
| 174 |
+
return {
|
| 175 |
+
"error": True,
|
| 176 |
+
"message": f"Failed to parse analysis: {str(e)}",
|
| 177 |
+
"raw_response": analysis_text
|
| 178 |
+
}
|
main.py
ADDED
|
@@ -0,0 +1,161 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
| 1 |
+
from fastapi import FastAPI, File, UploadFile, HTTPException
|
| 2 |
+
from fastapi.responses import JSONResponse
|
| 3 |
+
from fastapi.middleware.cors import CORSMiddleware
|
| 4 |
+
import base64
|
| 5 |
+
import io
|
| 6 |
+
from PIL import Image
|
| 7 |
+
from lab_analyzer import LabReportAnalyzer
|
| 8 |
+
import logging
|
| 9 |
+
|
| 10 |
+
# Configure logging
|
| 11 |
+
logging.basicConfig(level=logging.INFO)
|
| 12 |
+
logger = logging.getLogger(__name__)
|
| 13 |
+
|
| 14 |
+
# Initialize FastAPI app
|
| 15 |
+
app = FastAPI(
|
| 16 |
+
title="Lab Report Analysis API",
|
| 17 |
+
description="AI-powered lab report analysis service",
|
| 18 |
+
version="1.0.0"
|
| 19 |
+
)
|
| 20 |
+
|
| 21 |
+
# Add CORS middleware
|
| 22 |
+
app.add_middleware(
|
| 23 |
+
CORSMiddleware,
|
| 24 |
+
allow_origins=["*"], # Configure this properly for production
|
| 25 |
+
allow_credentials=True,
|
| 26 |
+
allow_methods=["*"],
|
| 27 |
+
allow_headers=["*"],
|
| 28 |
+
)
|
| 29 |
+
|
| 30 |
+
# Initialize the lab analyzer
|
| 31 |
+
analyzer = LabReportAnalyzer()
|
| 32 |
+
|
| 33 |
+
@app.get("/")
|
| 34 |
+
async def root():
|
| 35 |
+
"""Health check endpoint"""
|
| 36 |
+
return {"message": "Lab Report Analysis API is running"}
|
| 37 |
+
|
| 38 |
+
@app.get("/health")
|
| 39 |
+
async def health_check():
|
| 40 |
+
"""Health check endpoint for monitoring"""
|
| 41 |
+
return {"status": "healthy", "service": "lab-report-analyzer"}
|
| 42 |
+
|
| 43 |
+
@app.post("/analyze")
|
| 44 |
+
async def analyze_lab_report(file: UploadFile = File(...)):
|
| 45 |
+
"""
|
| 46 |
+
Analyze a lab report image and return structured results
|
| 47 |
+
|
| 48 |
+
Args:
|
| 49 |
+
file: Uploaded image file (jpg, jpeg, png, bmp, tiff, webp)
|
| 50 |
+
|
| 51 |
+
Returns:
|
| 52 |
+
JSON response with analysis results
|
| 53 |
+
"""
|
| 54 |
+
try:
|
| 55 |
+
# Read file contents first
|
| 56 |
+
contents = await file.read()
|
| 57 |
+
if len(contents) == 0:
|
| 58 |
+
raise HTTPException(status_code=400, detail="Empty file uploaded")
|
| 59 |
+
|
| 60 |
+
# Validate image can be opened (more reliable than content_type)
|
| 61 |
+
try:
|
| 62 |
+
image = Image.open(io.BytesIO(contents))
|
| 63 |
+
image.verify() # Verify it's a valid image
|
| 64 |
+
|
| 65 |
+
# Reset file pointer for re-reading
|
| 66 |
+
contents_for_analysis = contents
|
| 67 |
+
|
| 68 |
+
except Exception as e:
|
| 69 |
+
# Check if content type suggests it might be an image
|
| 70 |
+
allowed_types = ['image/', 'application/octet-stream']
|
| 71 |
+
if file.content_type and not any(t in file.content_type for t in allowed_types):
|
| 72 |
+
raise HTTPException(
|
| 73 |
+
status_code=400,
|
| 74 |
+
detail=f"File must be an image (jpg, jpeg, png, bmp, tiff, webp). Received: {file.content_type}"
|
| 75 |
+
)
|
| 76 |
+
else:
|
| 77 |
+
raise HTTPException(status_code=400, detail=f"Invalid image file: {str(e)}")
|
| 78 |
+
|
| 79 |
+
# Convert to base64 for analysis
|
| 80 |
+
image_b64 = base64.b64encode(contents_for_analysis).decode("utf-8")
|
| 81 |
+
|
| 82 |
+
# Analyze the lab report
|
| 83 |
+
logger.info(f"Analyzing lab report: {file.filename}")
|
| 84 |
+
analysis_result = await analyzer.analyze_report(image_b64)
|
| 85 |
+
|
| 86 |
+
return JSONResponse(
|
| 87 |
+
status_code=200,
|
| 88 |
+
content={
|
| 89 |
+
"success": True,
|
| 90 |
+
"filename": file.filename,
|
| 91 |
+
"analysis": analysis_result
|
| 92 |
+
}
|
| 93 |
+
)
|
| 94 |
+
|
| 95 |
+
except HTTPException:
|
| 96 |
+
raise
|
| 97 |
+
except Exception as e:
|
| 98 |
+
logger.error(f"Error analyzing lab report: {str(e)}")
|
| 99 |
+
raise HTTPException(status_code=500, detail=f"Internal server error: {str(e)}")
|
| 100 |
+
|
| 101 |
+
@app.post("/analyze-base64")
|
| 102 |
+
async def analyze_lab_report_base64(data: dict):
|
| 103 |
+
"""
|
| 104 |
+
Analyze a lab report from base64 encoded image
|
| 105 |
+
|
| 106 |
+
Args:
|
| 107 |
+
data: JSON with 'image' key containing base64 encoded image
|
| 108 |
+
|
| 109 |
+
Returns:
|
| 110 |
+
JSON response with analysis results
|
| 111 |
+
"""
|
| 112 |
+
try:
|
| 113 |
+
if 'image' not in data:
|
| 114 |
+
raise HTTPException(status_code=400, detail="Missing 'image' field in request body")
|
| 115 |
+
|
| 116 |
+
image_b64 = data['image']
|
| 117 |
+
|
| 118 |
+
# Remove data:image/...;base64, prefix if present
|
| 119 |
+
if image_b64.startswith('data:image'):
|
| 120 |
+
image_b64 = image_b64.split(',')[1]
|
| 121 |
+
|
| 122 |
+
# Validate base64 and image
|
| 123 |
+
try:
|
| 124 |
+
image_bytes = base64.b64decode(image_b64)
|
| 125 |
+
image = Image.open(io.BytesIO(image_bytes))
|
| 126 |
+
image.verify()
|
| 127 |
+
except Exception as e:
|
| 128 |
+
raise HTTPException(status_code=400, detail=f"Invalid base64 image: {str(e)}")
|
| 129 |
+
|
| 130 |
+
# Analyze the lab report
|
| 131 |
+
logger.info("Analyzing lab report from base64 data")
|
| 132 |
+
analysis_result = await analyzer.analyze_report(image_b64)
|
| 133 |
+
|
| 134 |
+
return JSONResponse(
|
| 135 |
+
status_code=200,
|
| 136 |
+
content={
|
| 137 |
+
"success": True,
|
| 138 |
+
"analysis": analysis_result
|
| 139 |
+
}
|
| 140 |
+
)
|
| 141 |
+
|
| 142 |
+
except HTTPException:
|
| 143 |
+
raise
|
| 144 |
+
except Exception as e:
|
| 145 |
+
logger.error(f"Error analyzing base64 lab report: {str(e)}")
|
| 146 |
+
raise HTTPException(status_code=500, detail=f"Internal server error: {str(e)}")
|
| 147 |
+
|
| 148 |
+
# Flutter-friendly endpoint aliases
|
| 149 |
+
@app.post("/api/analyze-lab")
|
| 150 |
+
async def analyze_lab_api(file: UploadFile = File(...)):
|
| 151 |
+
"""Flutter-friendly endpoint for lab analysis"""
|
| 152 |
+
return await analyze_lab_report(file)
|
| 153 |
+
|
| 154 |
+
@app.post("/api/analyze-lab-base64")
|
| 155 |
+
async def analyze_lab_base64_api(data: dict):
|
| 156 |
+
"""Flutter-friendly endpoint for base64 lab analysis"""
|
| 157 |
+
return await analyze_lab_report_base64(data)
|
| 158 |
+
|
| 159 |
+
if __name__ == "__main__":
|
| 160 |
+
import uvicorn
|
| 161 |
+
uvicorn.run("main:app", host="0.0.0.0", port=8000, reload=True)
|
models.py
ADDED
|
@@ -0,0 +1,27 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
from pydantic import BaseModel, Field
|
| 2 |
+
from typing import List, Optional, Any
|
| 3 |
+
|
| 4 |
+
class AnalysisRequest(BaseModel):
|
| 5 |
+
"""Request model for base64 image analysis"""
|
| 6 |
+
image: str = Field(..., description="Base64 encoded image string")
|
| 7 |
+
|
| 8 |
+
class AnalysisResponse(BaseModel):
|
| 9 |
+
"""Response model for lab report analysis"""
|
| 10 |
+
success: bool = Field(..., description="Whether the analysis was successful")
|
| 11 |
+
filename: Optional[str] = Field(None, description="Original filename if uploaded via file")
|
| 12 |
+
analysis: dict = Field(..., description="Analysis results")
|
| 13 |
+
|
| 14 |
+
class ParsedAnalysis(BaseModel):
|
| 15 |
+
"""Structured analysis result"""
|
| 16 |
+
error: bool = Field(False, description="Whether an error occurred")
|
| 17 |
+
summary: str = Field("", description="Summary of the lab report")
|
| 18 |
+
key_findings: List[str] = Field(default_factory=list, description="Key findings from the report")
|
| 19 |
+
interpretation: str = Field("", description="Medical interpretation")
|
| 20 |
+
note: str = Field("", description="Disclaimer note")
|
| 21 |
+
raw_response: str = Field("", description="Raw response from the AI model")
|
| 22 |
+
message: Optional[str] = Field(None, description="Error message if any")
|
| 23 |
+
|
| 24 |
+
class HealthResponse(BaseModel):
|
| 25 |
+
"""Health check response"""
|
| 26 |
+
status: str = Field(..., description="Service status")
|
| 27 |
+
service: str = Field(..., description="Service name")
|
requirements.txt
ADDED
|
@@ -0,0 +1,14 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
transformers>=4.44.0
|
| 2 |
+
huggingface-hub>=0.24.0
|
| 3 |
+
torch>=2.2.0
|
| 4 |
+
Pillow>=10.0.0
|
| 5 |
+
opencv-python>=4.9.0
|
| 6 |
+
numpy>=1.26.0
|
| 7 |
+
requests>=2.31.0
|
| 8 |
+
matplotlib>=3.9.0
|
| 9 |
+
ipython>=8.25.0
|
| 10 |
+
pandas>=2.2.0
|
| 11 |
+
fastapi>=0.104.0
|
| 12 |
+
uvicorn>=0.24.0
|
| 13 |
+
python-multipart>=0.0.6
|
| 14 |
+
pydantic>=2.4.0
|
test_client.py
ADDED
|
@@ -0,0 +1,83 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import requests
|
| 2 |
+
import base64
|
| 3 |
+
import json
|
| 4 |
+
from pathlib import Path
|
| 5 |
+
|
| 6 |
+
class LabReportAPIClient:
|
| 7 |
+
"""Client for testing the Lab Report Analysis API"""
|
| 8 |
+
|
| 9 |
+
def __init__(self, base_url: str = "http://localhost:8000"):
|
| 10 |
+
self.base_url = base_url.rstrip('/')
|
| 11 |
+
|
| 12 |
+
def health_check(self):
|
| 13 |
+
"""Check if the API is running"""
|
| 14 |
+
try:
|
| 15 |
+
response = requests.get(f"{self.base_url}/health")
|
| 16 |
+
return response.json()
|
| 17 |
+
except requests.exceptions.RequestException as e:
|
| 18 |
+
return {"error": f"Failed to connect: {str(e)}"}
|
| 19 |
+
|
| 20 |
+
def analyze_image_file(self, image_path: str):
|
| 21 |
+
"""Analyze a lab report image file"""
|
| 22 |
+
try:
|
| 23 |
+
with open(image_path, 'rb') as f:
|
| 24 |
+
files = {'file': (Path(image_path).name, f, 'image/jpeg')}
|
| 25 |
+
response = requests.post(f"{self.base_url}/analyze", files=files)
|
| 26 |
+
|
| 27 |
+
if response.status_code == 200:
|
| 28 |
+
return response.json()
|
| 29 |
+
else:
|
| 30 |
+
return {
|
| 31 |
+
"error": True,
|
| 32 |
+
"status_code": response.status_code,
|
| 33 |
+
"message": response.text
|
| 34 |
+
}
|
| 35 |
+
except Exception as e:
|
| 36 |
+
return {"error": f"Failed to analyze image: {str(e)}"}
|
| 37 |
+
|
| 38 |
+
def analyze_base64_image(self, image_path: str):
|
| 39 |
+
"""Analyze a lab report using base64 encoding"""
|
| 40 |
+
try:
|
| 41 |
+
with open(image_path, 'rb') as f:
|
| 42 |
+
image_b64 = base64.b64encode(f.read()).decode('utf-8')
|
| 43 |
+
|
| 44 |
+
data = {"image": image_b64}
|
| 45 |
+
response = requests.post(
|
| 46 |
+
f"{self.base_url}/analyze-base64",
|
| 47 |
+
json=data,
|
| 48 |
+
headers={'Content-Type': 'application/json'}
|
| 49 |
+
)
|
| 50 |
+
|
| 51 |
+
if response.status_code == 200:
|
| 52 |
+
return response.json()
|
| 53 |
+
else:
|
| 54 |
+
return {
|
| 55 |
+
"error": True,
|
| 56 |
+
"status_code": response.status_code,
|
| 57 |
+
"message": response.text
|
| 58 |
+
}
|
| 59 |
+
except Exception as e:
|
| 60 |
+
return {"error": f"Failed to analyze base64 image: {str(e)}"}
|
| 61 |
+
|
| 62 |
+
def main():
|
| 63 |
+
"""Test the API client"""
|
| 64 |
+
client = LabReportAPIClient()
|
| 65 |
+
|
| 66 |
+
# Health check
|
| 67 |
+
print("🏥 Testing Lab Report Analysis API")
|
| 68 |
+
print("=" * 50)
|
| 69 |
+
|
| 70 |
+
health = client.health_check()
|
| 71 |
+
print(f"Health Check: {health}")
|
| 72 |
+
print()
|
| 73 |
+
|
| 74 |
+
# You can test with an actual image file
|
| 75 |
+
# Uncomment and modify the path below to test with your lab report image
|
| 76 |
+
|
| 77 |
+
# image_path = "your_lab_report_image.jpg" # Replace with actual path
|
| 78 |
+
# print(f"Analyzing image: {image_path}")
|
| 79 |
+
# result = client.analyze_image_file(image_path)
|
| 80 |
+
# print(json.dumps(result, indent=2))
|
| 81 |
+
|
| 82 |
+
if __name__ == "__main__":
|
| 83 |
+
main()
|