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Runtime error
add nb_shots and make request work
Browse files- app.py +16 -1
- requirements.txt +3 -1
- src/display/utils.py +1 -0
- src/leaderboard/read_evals.py +39 -50
- src/populate.py +3 -3
app.py
CHANGED
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@@ -25,6 +25,7 @@ from src.display.utils import (
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Precision,
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generate_column_name
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)
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from src.envs import API, EVAL_REQUESTS_PATH, EVAL_RESULTS_PATH, QUEUE_REPO, REPO_ID, RESULTS_REPO, HF_TOKEN
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from src.populate import get_evaluation_queue_df, get_leaderboard_df
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from src.submission.submit import add_new_eval
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@@ -53,7 +54,7 @@ except Exception:
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restart_space()
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-
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leaderboard_df = original_df.copy()
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(
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@@ -89,6 +90,7 @@ def select_columns(df: pd.DataFrame, columns: list, phenotypes: list, metrics:li
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always_here_cols = [
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AutoEvalColumn.model_type_symbol.name,
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AutoEvalColumn.model.name,
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]
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task_cols = []
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@@ -197,6 +199,13 @@ with demo:
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elem_id="search-bar",
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)
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with gr.Column(min_width=320):
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filter_columns_type = gr.CheckboxGroup(
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label="Model types",
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choices=[t.to_str() for t in ModelType],
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@@ -234,6 +243,12 @@ with demo:
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interactive=False,
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visible=True,
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)
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# Dummy leaderboard for handling the case when the user uses backspace key
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hidden_leaderboard_table_for_search = gr.components.Dataframe(
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Precision,
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generate_column_name
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)
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+
from src.display.plot_curves import plot_curves
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from src.envs import API, EVAL_REQUESTS_PATH, EVAL_RESULTS_PATH, QUEUE_REPO, REPO_ID, RESULTS_REPO, HF_TOKEN
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from src.populate import get_evaluation_queue_df, get_leaderboard_df
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from src.submission.submit import add_new_eval
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restart_space()
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results, original_df = get_leaderboard_df(EVAL_RESULTS_PATH, COLS)
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leaderboard_df = original_df.copy()
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(
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always_here_cols = [
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AutoEvalColumn.model_type_symbol.name,
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AutoEvalColumn.model.name,
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AutoEvalColumn.nb_shots.name,
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]
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task_cols = []
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elem_id="search-bar",
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)
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with gr.Column(min_width=320):
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filter_nb_shots = gr.CheckboxGroup(
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label="Number of shots",
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choices=["Zero-shot", "10-shot", "All"],
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value=["Zero-shot", "10-shot", "All"],
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interactive=True,
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elem_id="filter-nb-shots",
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)
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filter_columns_type = gr.CheckboxGroup(
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label="Model types",
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choices=[t.to_str() for t in ModelType],
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interactive=False,
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visible=True,
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)
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# Plotting the curves
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# gr.Plot(
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# plot_curves(),
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# elem_id="plot-curves"
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# )
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# Dummy leaderboard for handling the case when the user uses backspace key
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hidden_leaderboard_table_for_search = gr.components.Dataframe(
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requirements.txt
CHANGED
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@@ -15,4 +15,6 @@ transformers==4.35.2
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tokenizers>=0.15.0
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git+https://github.com/EleutherAI/lm-evaluation-harness.git@b281b0921b636bc36ad05c0b0b0763bd6dd43463#egg=lm-eval
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accelerate==0.24.1
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-
sentencepiece
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tokenizers>=0.15.0
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git+https://github.com/EleutherAI/lm-evaluation-harness.git@b281b0921b636bc36ad05c0b0b0763bd6dd43463#egg=lm-eval
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accelerate==0.24.1
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+
sentencepiece
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python-dotenv==1.0.1
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plotly==5.22.0
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src/display/utils.py
CHANGED
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@@ -30,6 +30,7 @@ auto_eval_column_dict = []
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# Init
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auto_eval_column_dict.append(["model_type_symbol", ColumnContent, ColumnContent("T", "str", True, never_hidden=True)])
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auto_eval_column_dict.append(["model", ColumnContent, ColumnContent("Model", "markdown", True, never_hidden=True)])
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#Scores
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auto_eval_column_dict.append(["average_auroc", ColumnContent, ColumnContent("Average AUROC ⬆️", "number", True)])
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auto_eval_column_dict.append(["average_auprc", ColumnContent, ColumnContent("Average AUPRC ⬆️", "number", True)])
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# Init
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auto_eval_column_dict.append(["model_type_symbol", ColumnContent, ColumnContent("T", "str", True, never_hidden=True)])
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auto_eval_column_dict.append(["model", ColumnContent, ColumnContent("Model", "markdown", True, never_hidden=True)])
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auto_eval_column_dict.append(["nb_shots", ColumnContent, ColumnContent("#Shots", "number", True, never_hidden=True)])
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#Scores
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auto_eval_column_dict.append(["average_auroc", ColumnContent, ColumnContent("Average AUROC ⬆️", "number", True)])
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auto_eval_column_dict.append(["average_auprc", ColumnContent, ColumnContent("Average AUPRC ⬆️", "number", True)])
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src/leaderboard/read_evals.py
CHANGED
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@@ -15,13 +15,14 @@ from src.submission.check_validity import is_model_on_hub
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class EvalResult:
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"""Represents one full evaluation. Built from a combination of the result and request file for a given run.
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"""
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eval_name: str #
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full_model: str # org/model (path on hub)
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org: str
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model: str
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revision: str # commit hash, "" if main
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results: dict
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raw_data: dict
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precision: Precision = Precision.Unknown
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model_type: ModelType = ModelType.Unknown # Pretrained, fine tuned, ...
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weight_type: WeightType = WeightType.Original # Original or Adapter
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@@ -37,28 +38,26 @@ class EvalResult:
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"""Inits the result from the specific model result file"""
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with open(json_filepath) as fp:
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data = json.load(fp)
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-
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config = data.get("config")
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result_key = f"{org}_{model}_{precision.value.name}"
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full_model = "/".join(org_and_model)
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-
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still_on_hub, _, model_config = is_model_on_hub(
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full_model,
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)
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architecture = "?"
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if model_config is not None:
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if architectures:
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architecture = ";".join(architectures)
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# Extract results available in this file (some results are split in several files)
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results = {}
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for task in Tasks:
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task = task.value
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mean = data["results"].get(task.phenotype_key, {}).get("_".join(["mean", task.metric_key]), None)
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lower = data["results"].get(task.phenotype_key, {}).get("_".join(["lower", task.metric_key]), None)
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upper = data["results"].get(task.phenotype_key, {}).get("_".join(["upper", task.metric_key]), None)
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formated_score = f"{mean:.2f} ({lower:.2f}-{upper:.2f})" if mean is not None else None
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results["_".join([task.phenotype_key, task.metric_key])] = formated_score
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return self(
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eval_name=
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full_model=full_model,
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org=
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model=
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results=results,
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raw_data=data,
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precision=precision,
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revision=
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still_on_hub=still_on_hub,
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architecture=architecture
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)
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def update_with_request_file(self, requests_path):
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"""Finds the relevant request file for the current model and updates info with it"""
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request_file = get_request_file_for_model(requests_path, self.full_model, self.precision.value.name)
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try:
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with open(request_file, "r") as f:
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request = json.load(f)
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self.model_type = ModelType.from_str(request.get("model_type", ""))
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self.weight_type = WeightType[request.get("weight_type", "Original")]
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self.license = request.get("license", "?")
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self.likes = request.get("likes", 0)
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self.num_params = request.get("params", 0)
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self.date = request.get("submitted_time", "")
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except Exception:
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print(f"Could not find request file for {self.org}/{self.model} with precision {self.precision.value.name}")
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def to_dict(self):
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"""Converts the Eval Result to a dict compatible with our dataframe display"""
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average_auroc = np.mean(np.array([d["mean_auroc"] for d in self.raw_data["results"].values() if "mean_auroc" in d.keys()]))
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average_auprc = np.mean(np.array([d["mean_auprc"] for d in self.raw_data["results"].values() if "mean_auprc" in d.keys()]))
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data_dict = {
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"eval_name": self.eval_name, # not a column, just a save name,
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AutoEvalColumn.precision.name: self.precision.value.name,
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AutoEvalColumn.model_type.name: self.model_type.value.name,
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AutoEvalColumn.model_type_symbol.name: self.model_type.value.symbol,
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return request_file
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def get_raw_eval_results(results_path: str
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"""From the path of the results folder root, extract all needed info for results"""
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model_result_filepaths = []
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for model_result_filepath in model_result_filepaths:
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# Creation of result
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eval_result = EvalResult.init_from_json_file(model_result_filepath)
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eval_result.update_with_request_file(requests_path)
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# Store results of same eval together
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eval_name = eval_result.eval_name
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class EvalResult:
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"""Represents one full evaluation. Built from a combination of the result and request file for a given run.
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"""
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eval_name: str # org_model_precision_feature-set_nb-shots (uid)
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full_model: str # org/model (path on hub)
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org: str
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model: str
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revision: str # commit hash, "" if main
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results: dict
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raw_data: dict
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nb_shots: int = 0
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precision: Precision = Precision.Unknown
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model_type: ModelType = ModelType.Unknown # Pretrained, fine tuned, ...
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weight_type: WeightType = WeightType.Original # Original or Adapter
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"""Inits the result from the specific model result file"""
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with open(json_filepath) as fp:
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data = json.load(fp)
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# Get config
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config = data.get("config")
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full_model = config.get("model")
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org = full_model.split("/")[0]
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model = full_model.split("/")[1]
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precision = Precision.from_str(config.get("precision"))
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revision = config.get("revision", "")
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feature_set = config.get("feature_set", "Unknown")
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nb_shots = config.get("nb_shots", None)
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model_type = ModelType.from_str(config.get("model_type", ""))
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weight_type = WeightType[config.get("weight_type", "Original")]
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license = config.get("license", "?")
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likes = config.get("likes", 0)
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num_params = config.get("params", 0)
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date = config.get("submitted_time", "")
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# Check if model is still on hub
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still_on_hub, _, model_config = is_model_on_hub(
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full_model, revision, trust_remote_code=True, test_tokenizer=False, token=os.environ.get("TOKEN")
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)
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architecture = "?"
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if model_config is not None:
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if architectures:
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architecture = ";".join(architectures)
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results = {}
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for task in Tasks:
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task = task.value
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mean = data["results"].get(task.phenotype_key, {}).get("metrics", {}).get("_".join(["mean", task.metric_key]), None)
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lower = data["results"].get(task.phenotype_key, {}).get("metrics", {}).get("_".join(["lower", task.metric_key]), None)
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upper = data["results"].get(task.phenotype_key, {}).get("metrics", {}).get("_".join(["upper", task.metric_key]), None)
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formated_score = f"{mean:.2f} ({lower:.2f}-{upper:.2f})" if mean is not None else None
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results["_".join([task.phenotype_key, task.metric_key])] = formated_score
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return self(
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eval_name=f"{org}_{model}_{precision.value.name}_{feature_set}_{nb_shots}",
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full_model=full_model,
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org=full_model.split("/")[0],
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model=full_model.split("/")[1],
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results=results,
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raw_data=data,
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nb_shots=nb_shots,
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precision=precision,
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revision=revision,
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still_on_hub=still_on_hub,
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architecture=architecture,
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model_type=model_type,
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weight_type=weight_type,
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license=license,
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likes=likes,
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num_params=num_params,
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date=date
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)
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def to_dict(self):
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"""Converts the Eval Result to a dict compatible with our dataframe display"""
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average_auroc = np.mean(np.array([d["metrics"]["mean_auroc"] for d in self.raw_data["results"].values() if "mean_auroc" in d["metrics"].keys()]))
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average_auprc = np.mean(np.array([d["metrics"]["mean_auprc"] for d in self.raw_data["results"].values() if "mean_auprc" in d["metrics"].keys()]))
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data_dict = {
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"eval_name": self.eval_name, # not a column, just a save name,
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AutoEvalColumn.nb_shots.name: self.nb_shots,
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AutoEvalColumn.precision.name: self.precision.value.name,
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AutoEvalColumn.model_type.name: self.model_type.value.name,
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AutoEvalColumn.model_type_symbol.name: self.model_type.value.symbol,
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return request_file
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def get_raw_eval_results(results_path: str) -> list[EvalResult]:
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"""From the path of the results folder root, extract all needed info for results"""
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model_result_filepaths = []
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for model_result_filepath in model_result_filepaths:
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# Creation of result
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eval_result = EvalResult.init_from_json_file(model_result_filepath)
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# Store results of same eval together
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eval_name = eval_result.eval_name
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src/populate.py
CHANGED
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@@ -5,12 +5,12 @@ import pandas as pd
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from src.display.formatting import has_no_nan_values, make_clickable_model
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from src.display.utils import AutoEvalColumn, EvalQueueColumn
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from src.leaderboard.read_evals import get_raw_eval_results
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def get_leaderboard_df(results_path: str,
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"""Creates a dataframe from all the individual experiment results"""
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raw_data = get_raw_eval_results(results_path
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all_data_json = [v.to_dict() for v in raw_data]
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df = pd.DataFrame.from_records(all_data_json)
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from src.display.formatting import has_no_nan_values, make_clickable_model
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from src.display.utils import AutoEvalColumn, EvalQueueColumn
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from src.leaderboard.read_evals import get_raw_eval_results, EvalResult
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def get_leaderboard_df(results_path: str, cols: list) -> pd.DataFrame:
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"""Creates a dataframe from all the individual experiment results"""
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raw_data = get_raw_eval_results(results_path)
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all_data_json = [v.to_dict() for v in raw_data]
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df = pd.DataFrame.from_records(all_data_json)
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