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Upload app.py
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app.py
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@@ -14,6 +14,7 @@ import torch.nn as nn
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import torchvision.models as models
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import torchvision.transforms as transforms
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from sklearn.metrics.pairwise import cosine_similarity
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import cv2
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def square_padd(original_data, square_size=(120,152, 184), order = 1):
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@@ -534,7 +535,7 @@ with gr.Blocks() as demo:
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with gr.Column(scale=1):
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gr.Markdown("### Step 4: Visualizing Allen Brain Cell Types Atlas")
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gallery = gr.Gallery(label="ABC Atlas", value = gallery_images,columns = 5, height = 450)
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gr.Markdown("### Step 5: Run cell type
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with gr.Row():
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run_button = gr.Button("Map My Sections")
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reg_button = gr.Button("Run Registration (Optional)", visible=False)
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import torchvision.models as models
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import torchvision.transforms as transforms
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from sklearn.metrics.pairwise import cosine_similarity
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from skimage.transform import resize
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import cv2
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def square_padd(original_data, square_size=(120,152, 184), order = 1):
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with gr.Column(scale=1):
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gr.Markdown("### Step 4: Visualizing Allen Brain Cell Types Atlas")
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gallery = gr.Gallery(label="ABC Atlas", value = gallery_images,columns = 5, height = 450)
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gr.Markdown("### Step 5: Run cell type mapping and/or registeration. ")
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with gr.Row():
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run_button = gr.Button("Map My Sections")
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reg_button = gr.Button("Run Registration (Optional)", visible=False)
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