R/Palettes.R

col_cluster <- list()
col_cluster[["MainType"]] <- c('Excitatory' = "#7570B3FF", 'Inhibitory' = "#E7298AFF",
                  "Oligo"="#614e96", "Astro"="#a90dfd", "NPC"="#84660c",
                  "Endo"="#983f00", "OPC"="#ed30a6", "VLMC"="#cccc01",
                  "Microglia"="#f89279")
col_cluster[["SubType"]] <- c("Im L2/3 IT"="#062e60", "Im L4/5 IT"="#4393c3", "Im L5 IT"="#a6cee3", "Im L6 IT"="#66bd63",
                                 "L2/3 IT"="#342a85", "L4/5 IT"="#0a6ddd", "L5 IT"="#009acd", "L6 IT"="#31b69e",
                                 "L5 PT"="#a1bc6a", "L5 NP"="#f7bc3e", "L6 CT"="#f7fa10",
                                 "Lamp5"="#0e0786", "Pvalb"="#6902a4", "Sst"="#df6361", "Vip"="#f8a635",
                                 "NPC"="#84660c","Astro"="#a90dfd","Endo"="#983f00","Microglia"="#f89279",
                                 "Oligo"="#614e96","OPC"="#ed30a6")
#col_cluster[["gene"]] <- c("#440154FF","#482173FF","#433E85FF","#38598CFF","#2D708EFF","#25858EFF",
#                           "#1E9B8AFF","#2BB07FFF","#51C56AFF","#85D54AFF","#C2DF23FF","#FDE725FF")
col_cluster[["gene"]] <- c("#f7f7f7","#FFF7F3","#FDE0DD","#FCC5C0","#FA9FB5","#F768A1","#DD3497","#AE017E","#7A0177","#49006A")