TigerZheng commited on
Commit
cea1007
·
verified ·
1 Parent(s): d819007

Update PFCdevApp.qmd

Browse files
Files changed (1) hide show
  1. PFCdevApp.qmd +7 -0
PFCdevApp.qmd CHANGED
@@ -61,6 +61,8 @@ We collected the whole brain stereo-seq datasets of P1 and Adult mice from [(Han
61
 
62
 
63
 
 
 
64
  , extracted and analyzed the PFC brain region. Users can browse the following content through the spatial page:
65
  </p>
66
 
@@ -339,6 +341,11 @@ plotOutput('p77_geneplot')
339
 
340
  output$p77_geneplot <- renderPlot({
341
  gene_i <- input$sp_gene
 
 
 
 
 
342
  data <- data.frame(
343
  x = sp_p77$x_rotated, y = sp_p77$y_rotated,
344
  gene = scale(sp_p77@assays$RNA$counts[gene_i,])
 
61
 
62
 
63
 
64
+
65
+
66
  , extracted and analyzed the PFC brain region. Users can browse the following content through the spatial page:
67
  </p>
68
 
 
341
 
342
  output$p77_geneplot <- renderPlot({
343
  gene_i <- input$sp_gene
344
+ gene_i_exp <- as.numeric(FetchData(object = sp_p77, vars = gene_i, slot = "counts"))
345
+ data <- data.frame(
346
+ x = sp_p77$x_rotated, y = sp_p77$y_rotated,
347
+ gene = scale(gene_i_exp)
348
+ )
349
  data <- data.frame(
350
  x = sp_p77$x_rotated, y = sp_p77$y_rotated,
351
  gene = scale(sp_p77@assays$RNA$counts[gene_i,])