Spaces:
Sleeping
Sleeping
Upload src/embed_index.py with huggingface_hub
Browse files- src/embed_index.py +148 -0
src/embed_index.py
ADDED
|
@@ -0,0 +1,148 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""
|
| 2 |
+
Embeddings + FAISS index build/save/load.
|
| 3 |
+
"""
|
| 4 |
+
from typing import List
|
| 5 |
+
from pathlib import Path
|
| 6 |
+
import os
|
| 7 |
+
import platform
|
| 8 |
+
|
| 9 |
+
# On macOS, FAISS and PyTorch both ship libomp and loading both copies without
|
| 10 |
+
# telling LibOMP they're duplicates aborts the interpreter. Setting this flag
|
| 11 |
+
# before importing either library prevents the crash when building embeddings.
|
| 12 |
+
if platform.system() == "Darwin":
|
| 13 |
+
os.environ.setdefault("KMP_DUPLICATE_LIB_OK", "TRUE")
|
| 14 |
+
|
| 15 |
+
import numpy as np
|
| 16 |
+
# Import FAISS before torch/sentence-transformers so libomp loads in a safe order on macOS.
|
| 17 |
+
import faiss
|
| 18 |
+
from sentence_transformers import SentenceTransformer
|
| 19 |
+
import pandas as pd
|
| 20 |
+
|
| 21 |
+
|
| 22 |
+
def embed_texts(texts: List[str], model_name: str):
|
| 23 |
+
"""
|
| 24 |
+
Return matrix of embeddings for texts.
|
| 25 |
+
|
| 26 |
+
# TODO hints:
|
| 27 |
+
# - Load SentenceTransformer by name; encode with normalize_embeddings=True if available.
|
| 28 |
+
# - Batch encode; return numpy array (n, d).
|
| 29 |
+
|
| 30 |
+
# Acceptance:
|
| 31 |
+
# - Returns embeddings and model reference (if needed).
|
| 32 |
+
"""
|
| 33 |
+
model = SentenceTransformer(model_name)
|
| 34 |
+
embeddings = model.encode(texts, normalize_embeddings=True, show_progress_bar=True)
|
| 35 |
+
# Ensure numpy array and float32 for FAISS compatibility
|
| 36 |
+
embeddings = np.array(embeddings, dtype=np.float32)
|
| 37 |
+
return embeddings, model
|
| 38 |
+
|
| 39 |
+
|
| 40 |
+
def build_faiss_index(embeddings):
|
| 41 |
+
"""
|
| 42 |
+
Build a FAISS index and return it.
|
| 43 |
+
|
| 44 |
+
# TODO hints:
|
| 45 |
+
# - Use IndexFlatIP or L2; ensure vectors are normalized if using IP.
|
| 46 |
+
|
| 47 |
+
# Acceptance:
|
| 48 |
+
# - Returns a FAISS index ready for add/search.
|
| 49 |
+
"""
|
| 50 |
+
# Ensure embeddings are numpy array and float32
|
| 51 |
+
if not isinstance(embeddings, np.ndarray):
|
| 52 |
+
embeddings = np.array(embeddings, dtype=np.float32)
|
| 53 |
+
if embeddings.dtype != np.float32:
|
| 54 |
+
embeddings = embeddings.astype(np.float32)
|
| 55 |
+
|
| 56 |
+
# Make a copy before normalizing to avoid in-place modification issues
|
| 57 |
+
# (normalize_L2 modifies the array in-place)
|
| 58 |
+
embeddings = embeddings.copy()
|
| 59 |
+
|
| 60 |
+
# Ensure embeddings are normalized for IndexFlatIP (inner product = cosine similarity)
|
| 61 |
+
# Note: embeddings should already be normalized from embed_texts, but normalize_L2 is idempotent
|
| 62 |
+
faiss.normalize_L2(embeddings)
|
| 63 |
+
|
| 64 |
+
# Create IndexFlatIP (Inner Product) for normalized vectors
|
| 65 |
+
dimension = embeddings.shape[1]
|
| 66 |
+
index = faiss.IndexFlatIP(dimension)
|
| 67 |
+
index.add(embeddings)
|
| 68 |
+
|
| 69 |
+
return index
|
| 70 |
+
|
| 71 |
+
|
| 72 |
+
def save_index(index, meta_rows, out_dir: str):
|
| 73 |
+
"""
|
| 74 |
+
Persist FAISS index + metadata (CSV/Parquet) to data/index/.
|
| 75 |
+
|
| 76 |
+
Args:
|
| 77 |
+
index: FAISS index to save
|
| 78 |
+
meta_rows: List of dicts or DataFrame with metadata (chunk IDs, source info)
|
| 79 |
+
out_dir: Output directory path
|
| 80 |
+
|
| 81 |
+
# TODO hints:
|
| 82 |
+
# - Write index to .faiss and metadata to .parquet with chunk IDs and source info.
|
| 83 |
+
|
| 84 |
+
# Acceptance:
|
| 85 |
+
# - Files exist in data/index/.
|
| 86 |
+
"""
|
| 87 |
+
out_path = Path(out_dir)
|
| 88 |
+
out_path.mkdir(parents=True, exist_ok=True)
|
| 89 |
+
|
| 90 |
+
# Save FAISS index
|
| 91 |
+
index_path = out_path / 'index.faiss'
|
| 92 |
+
faiss.write_index(index, str(index_path))
|
| 93 |
+
|
| 94 |
+
# Convert meta_rows to DataFrame if it's a list
|
| 95 |
+
if isinstance(meta_rows, list):
|
| 96 |
+
meta_df = pd.DataFrame(meta_rows)
|
| 97 |
+
elif isinstance(meta_rows, pd.DataFrame):
|
| 98 |
+
meta_df = meta_rows
|
| 99 |
+
else:
|
| 100 |
+
raise ValueError("meta_rows must be a list of dicts or a pandas DataFrame")
|
| 101 |
+
|
| 102 |
+
# Save metadata
|
| 103 |
+
metadata_path = out_path / 'metadata.parquet'
|
| 104 |
+
meta_df.to_parquet(metadata_path, index=False)
|
| 105 |
+
|
| 106 |
+
print(f"β
Saved index to: {index_path}")
|
| 107 |
+
print(f"β
Saved metadata to: {metadata_path}")
|
| 108 |
+
print(f" Index size: {index.ntotal} vectors")
|
| 109 |
+
print(f" Metadata rows: {len(meta_df)}")
|
| 110 |
+
|
| 111 |
+
|
| 112 |
+
def load_index(in_dir: str):
|
| 113 |
+
"""
|
| 114 |
+
Load FAISS index + metadata.
|
| 115 |
+
|
| 116 |
+
Args:
|
| 117 |
+
in_dir: Input directory path containing index.faiss and metadata.parquet
|
| 118 |
+
|
| 119 |
+
# TODO hints:
|
| 120 |
+
# - Read index and matching metadata frame; sanity-check row counts.
|
| 121 |
+
|
| 122 |
+
# Acceptance:
|
| 123 |
+
# - Returns (index, metadata_df).
|
| 124 |
+
"""
|
| 125 |
+
in_path = Path(in_dir)
|
| 126 |
+
|
| 127 |
+
# Load FAISS index
|
| 128 |
+
index_path = in_path / 'index.faiss'
|
| 129 |
+
if not index_path.exists():
|
| 130 |
+
raise FileNotFoundError(f"Index file not found: {index_path}")
|
| 131 |
+
index = faiss.read_index(str(index_path))
|
| 132 |
+
|
| 133 |
+
# Load metadata
|
| 134 |
+
metadata_path = in_path / 'metadata.parquet'
|
| 135 |
+
if not metadata_path.exists():
|
| 136 |
+
raise FileNotFoundError(f"Metadata file not found: {metadata_path}")
|
| 137 |
+
meta_df = pd.read_parquet(metadata_path)
|
| 138 |
+
|
| 139 |
+
# Sanity check: row counts should match
|
| 140 |
+
if index.ntotal != len(meta_df):
|
| 141 |
+
raise ValueError(
|
| 142 |
+
f"Mismatch: index has {index.ntotal} vectors but metadata has {len(meta_df)} rows"
|
| 143 |
+
)
|
| 144 |
+
|
| 145 |
+
print(f"β
Loaded index: {index.ntotal} vectors, dimension {index.d}")
|
| 146 |
+
print(f"β
Loaded metadata: {len(meta_df)} rows")
|
| 147 |
+
|
| 148 |
+
return index, meta_df
|