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Update magnetic.py
Browse files- magnetic.py +951 -907
magnetic.py
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@@ -1,907 +1,951 @@
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import math
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import pandas as pd
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import numpy as np
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import json
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import requests
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import datetime
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from datetime import timedelta
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from PIL import Image
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# alternative to PIL
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import matplotlib.pyplot as plt
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import matplotlib.image as mpimg
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import os
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import matplotlib.dates as mdates
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import seaborn as sns
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from IPython.display import Image as image_display
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path = os.getcwd()
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from fastdtw import fastdtw
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from scipy.spatial.distance import euclidean
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from IPython.display import display
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from dateutil import parser
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from Levenshtein import distance
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from sklearn.model_selection import train_test_split
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from sklearn.metrics import confusion_matrix
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from stqdm import stqdm
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stqdm.pandas()
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import streamlit.components.v1 as components
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from dateutil import parser
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from sentence_transformers import SentenceTransformer
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import torch
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import squarify
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import matplotlib.colors as mcolors
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import textwrap
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import datamapplot
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|
|
|
| 1 |
+
|
| 2 |
+
import math
|
| 3 |
+
import pandas as pd
|
| 4 |
+
import numpy as np
|
| 5 |
+
import json
|
| 6 |
+
import requests
|
| 7 |
+
import datetime
|
| 8 |
+
from datetime import timedelta
|
| 9 |
+
from PIL import Image
|
| 10 |
+
# alternative to PIL
|
| 11 |
+
import matplotlib.pyplot as plt
|
| 12 |
+
import matplotlib.image as mpimg
|
| 13 |
+
import os
|
| 14 |
+
import matplotlib.dates as mdates
|
| 15 |
+
import seaborn as sns
|
| 16 |
+
from IPython.display import Image as image_display
|
| 17 |
+
path = os.getcwd()
|
| 18 |
+
from fastdtw import fastdtw
|
| 19 |
+
from scipy.spatial.distance import euclidean
|
| 20 |
+
from IPython.display import display
|
| 21 |
+
from dateutil import parser
|
| 22 |
+
from Levenshtein import distance
|
| 23 |
+
from sklearn.model_selection import train_test_split
|
| 24 |
+
from sklearn.metrics import confusion_matrix
|
| 25 |
+
from stqdm import stqdm
|
| 26 |
+
stqdm.pandas()
|
| 27 |
+
import streamlit.components.v1 as components
|
| 28 |
+
from dateutil import parser
|
| 29 |
+
from sentence_transformers import SentenceTransformer
|
| 30 |
+
import torch
|
| 31 |
+
import squarify
|
| 32 |
+
import matplotlib.colors as mcolors
|
| 33 |
+
import textwrap
|
| 34 |
+
import datamapplot
|
| 35 |
+
import streamlit as st
|
| 36 |
+
|
| 37 |
+
|
| 38 |
+
if 'form_submitted' not in st.session_state:
|
| 39 |
+
st.session_state['form_submitted'] = False
|
| 40 |
+
|
| 41 |
+
|
| 42 |
+
st.title('Magnetic Correlations Dashboard')
|
| 43 |
+
|
| 44 |
+
st.set_option('deprecation.showPyplotGlobalUse', False)
|
| 45 |
+
|
| 46 |
+
|
| 47 |
+
from pandas.api.types import (
|
| 48 |
+
is_categorical_dtype,
|
| 49 |
+
is_datetime64_any_dtype,
|
| 50 |
+
is_numeric_dtype,
|
| 51 |
+
is_object_dtype,
|
| 52 |
+
)
|
| 53 |
+
|
| 54 |
+
|
| 55 |
+
def plot_treemap(df, column, top_n=32):
|
| 56 |
+
# Get the value counts and the top N labels
|
| 57 |
+
value_counts = df[column].value_counts()
|
| 58 |
+
top_labels = value_counts.iloc[:top_n].index
|
| 59 |
+
|
| 60 |
+
# Use np.where to replace all values not in the top N with 'Other'
|
| 61 |
+
revised_column = f'{column}_revised'
|
| 62 |
+
df[revised_column] = np.where(df[column].isin(top_labels), df[column], 'Other')
|
| 63 |
+
|
| 64 |
+
# Get the value counts including the 'Other' category
|
| 65 |
+
sizes = df[revised_column].value_counts().values
|
| 66 |
+
labels = df[revised_column].value_counts().index
|
| 67 |
+
|
| 68 |
+
# Get a gradient of colors
|
| 69 |
+
# colors = list(mcolors.TABLEAU_COLORS.values())
|
| 70 |
+
|
| 71 |
+
n_colors = len(sizes)
|
| 72 |
+
colors = plt.cm.Oranges(np.linspace(0.3, 0.9, n_colors))[::-1]
|
| 73 |
+
|
| 74 |
+
|
| 75 |
+
# Get % of each category
|
| 76 |
+
percents = sizes / sizes.sum()
|
| 77 |
+
|
| 78 |
+
# Prepare labels with percentages
|
| 79 |
+
labels = [f'{label}\n {percent:.1%}' for label, percent in zip(labels, percents)]
|
| 80 |
+
|
| 81 |
+
fig, ax = plt.subplots(figsize=(20, 12))
|
| 82 |
+
|
| 83 |
+
# Plot the treemap
|
| 84 |
+
squarify.plot(sizes=sizes, label=labels, alpha=0.7, pad=True, color=colors, text_kwargs={'fontsize': 10})
|
| 85 |
+
|
| 86 |
+
ax = plt.gca()
|
| 87 |
+
# Iterate over text elements and rectangles (patches) in the axes for color adjustment
|
| 88 |
+
for text, rect in zip(ax.texts, ax.patches):
|
| 89 |
+
background_color = rect.get_facecolor()
|
| 90 |
+
r, g, b, _ = mcolors.to_rgba(background_color)
|
| 91 |
+
brightness = np.average([r, g, b])
|
| 92 |
+
text.set_color('white' if brightness < 0.5 else 'black')
|
| 93 |
+
|
| 94 |
+
|
| 95 |
+
def plot_hist(df, column, bins=10, kde=True):
|
| 96 |
+
fig, ax = plt.subplots(figsize=(12, 6))
|
| 97 |
+
sns.histplot(data=df, x=column, kde=True, bins=bins,color='orange')
|
| 98 |
+
# set the ticks and frame in orange
|
| 99 |
+
ax.spines['bottom'].set_color('orange')
|
| 100 |
+
ax.spines['top'].set_color('orange')
|
| 101 |
+
ax.spines['right'].set_color('orange')
|
| 102 |
+
ax.spines['left'].set_color('orange')
|
| 103 |
+
ax.xaxis.label.set_color('orange')
|
| 104 |
+
ax.yaxis.label.set_color('orange')
|
| 105 |
+
ax.tick_params(axis='x', colors='orange')
|
| 106 |
+
ax.tick_params(axis='y', colors='orange')
|
| 107 |
+
ax.title.set_color('orange')
|
| 108 |
+
|
| 109 |
+
# Set transparent background
|
| 110 |
+
fig.patch.set_alpha(0)
|
| 111 |
+
ax.patch.set_alpha(0)
|
| 112 |
+
return fig
|
| 113 |
+
|
| 114 |
+
|
| 115 |
+
|
| 116 |
+
|
| 117 |
+
def plot_line(df, x_column, y_columns, figsize=(12, 10), color='orange', title=None, rolling_mean_value=2):
|
| 118 |
+
import matplotlib.cm as cm
|
| 119 |
+
# Sort the dataframe by the date column
|
| 120 |
+
df = df.sort_values(by=x_column)
|
| 121 |
+
|
| 122 |
+
# Calculate rolling mean for each y_column
|
| 123 |
+
if rolling_mean_value:
|
| 124 |
+
df[y_columns] = df[y_columns].rolling(len(df) // rolling_mean_value).mean()
|
| 125 |
+
|
| 126 |
+
# Create the plot
|
| 127 |
+
fig, ax = plt.subplots(figsize=figsize)
|
| 128 |
+
|
| 129 |
+
colors = cm.Oranges(np.linspace(0.2, 1, len(y_columns)))
|
| 130 |
+
|
| 131 |
+
# Plot each y_column as a separate line with a different color
|
| 132 |
+
for i, y_column in enumerate(y_columns):
|
| 133 |
+
df.plot(x=x_column, y=y_column, ax=ax, color=colors[i], label=y_column, linewidth=.5)
|
| 134 |
+
|
| 135 |
+
# Rotate x-axis labels
|
| 136 |
+
ax.set_xticklabels(ax.get_xticklabels(), rotation=30, ha='right')
|
| 137 |
+
|
| 138 |
+
# Format x_column as date if it is
|
| 139 |
+
if np.issubdtype(df[x_column].dtype, np.datetime64) or np.issubdtype(df[x_column].dtype, np.timedelta64):
|
| 140 |
+
df[x_column] = pd.to_datetime(df[x_column]).dt.date
|
| 141 |
+
|
| 142 |
+
# Set title, labels, and legend
|
| 143 |
+
ax.set_title(title or f'{", ".join(y_columns)} over {x_column}', color=color, fontweight='bold')
|
| 144 |
+
ax.set_xlabel(x_column, color=color)
|
| 145 |
+
ax.set_ylabel(', '.join(y_columns), color=color)
|
| 146 |
+
ax.spines['bottom'].set_color('orange')
|
| 147 |
+
ax.spines['top'].set_color('orange')
|
| 148 |
+
ax.spines['right'].set_color('orange')
|
| 149 |
+
ax.spines['left'].set_color('orange')
|
| 150 |
+
ax.xaxis.label.set_color('orange')
|
| 151 |
+
ax.yaxis.label.set_color('orange')
|
| 152 |
+
ax.tick_params(axis='x', colors='orange')
|
| 153 |
+
ax.tick_params(axis='y', colors='orange')
|
| 154 |
+
ax.title.set_color('orange')
|
| 155 |
+
|
| 156 |
+
ax.legend(loc='upper right', bbox_to_anchor=(1, 1), facecolor='black', framealpha=.4, labelcolor='orange', edgecolor='orange')
|
| 157 |
+
|
| 158 |
+
# Remove background
|
| 159 |
+
fig.patch.set_alpha(0)
|
| 160 |
+
ax.patch.set_alpha(0)
|
| 161 |
+
|
| 162 |
+
return fig
|
| 163 |
+
|
| 164 |
+
def plot_bar(df, x_column, y_column, figsize=(12, 10), color='orange', title=None, rotation=45):
|
| 165 |
+
fig, ax = plt.subplots(figsize=figsize)
|
| 166 |
+
|
| 167 |
+
sns.barplot(data=df, x=x_column, y=y_column, color=color, ax=ax)
|
| 168 |
+
|
| 169 |
+
ax.set_title(title if title else f'{y_column} by {x_column}', color=color, fontweight='bold')
|
| 170 |
+
ax.set_xlabel(x_column, color=color)
|
| 171 |
+
ax.set_ylabel(y_column, color=color)
|
| 172 |
+
|
| 173 |
+
ax.tick_params(axis='x', colors=color)
|
| 174 |
+
ax.tick_params(axis='y', colors=color)
|
| 175 |
+
|
| 176 |
+
plt.xticks(rotation=rotation)
|
| 177 |
+
|
| 178 |
+
# Remove background
|
| 179 |
+
fig.patch.set_alpha(0)
|
| 180 |
+
ax.patch.set_alpha(0)
|
| 181 |
+
ax.spines['bottom'].set_color('orange')
|
| 182 |
+
ax.spines['top'].set_color('orange')
|
| 183 |
+
ax.spines['right'].set_color('orange')
|
| 184 |
+
ax.spines['left'].set_color('orange')
|
| 185 |
+
ax.xaxis.label.set_color('orange')
|
| 186 |
+
ax.yaxis.label.set_color('orange')
|
| 187 |
+
ax.tick_params(axis='x', colors='orange')
|
| 188 |
+
ax.tick_params(axis='y', colors='orange')
|
| 189 |
+
ax.title.set_color('orange')
|
| 190 |
+
ax.legend(loc='upper right', bbox_to_anchor=(1, 1), facecolor='black', framealpha=.4, labelcolor='orange', edgecolor='orange')
|
| 191 |
+
|
| 192 |
+
return fig
|
| 193 |
+
|
| 194 |
+
def plot_grouped_bar(df, x_columns, y_column, figsize=(12, 10), colors=None, title=None):
|
| 195 |
+
fig, ax = plt.subplots(figsize=figsize)
|
| 196 |
+
|
| 197 |
+
width = 0.8 / len(x_columns) # the width of the bars
|
| 198 |
+
x = np.arange(len(df)) # the label locations
|
| 199 |
+
|
| 200 |
+
for i, x_column in enumerate(x_columns):
|
| 201 |
+
sns.barplot(data=df, x=x, y=y_column, color=colors[i] if colors else None, ax=ax, width=width, label=x_column)
|
| 202 |
+
x += width # add the width of the bar to the x position for the next bar
|
| 203 |
+
|
| 204 |
+
ax.set_title(title if title else f'{y_column} by {", ".join(x_columns)}', color='orange', fontweight='bold')
|
| 205 |
+
ax.set_xlabel('Groups', color='orange')
|
| 206 |
+
ax.set_ylabel(y_column, color='orange')
|
| 207 |
+
|
| 208 |
+
ax.set_xticks(x - width * len(x_columns) / 2)
|
| 209 |
+
ax.set_xticklabels(df.index)
|
| 210 |
+
|
| 211 |
+
ax.tick_params(axis='x', colors='orange')
|
| 212 |
+
ax.tick_params(axis='y', colors='orange')
|
| 213 |
+
|
| 214 |
+
# Remove background
|
| 215 |
+
fig.patch.set_alpha(0)
|
| 216 |
+
ax.patch.set_alpha(0)
|
| 217 |
+
ax.spines['bottom'].set_color('orange')
|
| 218 |
+
ax.spines['top'].set_color('orange')
|
| 219 |
+
ax.spines['right'].set_color('orange')
|
| 220 |
+
ax.spines['left'].set_color('orange')
|
| 221 |
+
ax.xaxis.label.set_color('orange')
|
| 222 |
+
ax.yaxis.label.set_color('orange')
|
| 223 |
+
ax.title.set_color('orange')
|
| 224 |
+
ax.legend(loc='upper right', bbox_to_anchor=(1, 1), facecolor='black', framealpha=.4, labelcolor='orange', edgecolor='orange')
|
| 225 |
+
|
| 226 |
+
return fig
|
| 227 |
+
|
| 228 |
+
|
| 229 |
+
def filter_dataframe(df: pd.DataFrame) -> pd.DataFrame:
|
| 230 |
+
"""
|
| 231 |
+
Adds a UI on top of a dataframe to let viewers filter columns
|
| 232 |
+
|
| 233 |
+
Args:
|
| 234 |
+
df (pd.DataFrame): Original dataframe
|
| 235 |
+
|
| 236 |
+
Returns:
|
| 237 |
+
pd.DataFrame: Filtered dataframe
|
| 238 |
+
"""
|
| 239 |
+
|
| 240 |
+
title_font = "Arial"
|
| 241 |
+
body_font = "Arial"
|
| 242 |
+
title_size = 32
|
| 243 |
+
colors = ["red", "green", "blue"]
|
| 244 |
+
interpretation = False
|
| 245 |
+
extract_docx = False
|
| 246 |
+
title = "My Chart"
|
| 247 |
+
regex = ".*"
|
| 248 |
+
img_path = 'default_image.png'
|
| 249 |
+
|
| 250 |
+
|
| 251 |
+
#try:
|
| 252 |
+
# modify = st.checkbox("Add filters on raw data")
|
| 253 |
+
#except:
|
| 254 |
+
# try:
|
| 255 |
+
# modify = st.checkbox("Add filters on processed data")
|
| 256 |
+
# except:
|
| 257 |
+
# try:
|
| 258 |
+
# modify = st.checkbox("Add filters on parsed data")
|
| 259 |
+
# except:
|
| 260 |
+
# pass
|
| 261 |
+
|
| 262 |
+
#if not modify:
|
| 263 |
+
# return df
|
| 264 |
+
|
| 265 |
+
df_ = df.copy()
|
| 266 |
+
# Try to convert datetimes into a standard format (datetime, no timezone)
|
| 267 |
+
|
| 268 |
+
#modification_container = st.container()
|
| 269 |
+
|
| 270 |
+
#with modification_container:
|
| 271 |
+
to_filter_columns = st.multiselect("Filter dataframe on", df_.columns)
|
| 272 |
+
|
| 273 |
+
date_column = None
|
| 274 |
+
filtered_columns = []
|
| 275 |
+
|
| 276 |
+
for column in to_filter_columns:
|
| 277 |
+
left, right = st.columns((1, 20))
|
| 278 |
+
# Treat columns with < 200 unique values as categorical if not date or numeric
|
| 279 |
+
if is_categorical_dtype(df_[column]) or (df_[column].nunique() < 120 and not is_datetime64_any_dtype(df_[column]) and not is_numeric_dtype(df_[column])):
|
| 280 |
+
user_cat_input = right.multiselect(
|
| 281 |
+
f"Values for {column}",
|
| 282 |
+
df_[column].value_counts().index.tolist(),
|
| 283 |
+
default=list(df_[column].value_counts().index)
|
| 284 |
+
)
|
| 285 |
+
df_ = df_[df_[column].isin(user_cat_input)]
|
| 286 |
+
filtered_columns.append(column)
|
| 287 |
+
|
| 288 |
+
with st.status(f"Category Distribution: {column}", expanded=False) as stat:
|
| 289 |
+
st.pyplot(plot_treemap(df_, column))
|
| 290 |
+
|
| 291 |
+
elif is_numeric_dtype(df_[column]):
|
| 292 |
+
_min = float(df_[column].min())
|
| 293 |
+
_max = float(df_[column].max())
|
| 294 |
+
step = (_max - _min) / 100
|
| 295 |
+
user_num_input = right.slider(
|
| 296 |
+
f"Values for {column}",
|
| 297 |
+
min_value=_min,
|
| 298 |
+
max_value=_max,
|
| 299 |
+
value=(_min, _max),
|
| 300 |
+
step=step,
|
| 301 |
+
)
|
| 302 |
+
df_ = df_[df_[column].between(*user_num_input)]
|
| 303 |
+
filtered_columns.append(column)
|
| 304 |
+
|
| 305 |
+
# Chart_GPT = ChartGPT(df_, title_font, body_font, title_size,
|
| 306 |
+
# colors, interpretation, extract_docx, img_path)
|
| 307 |
+
|
| 308 |
+
with st.status(f"Numerical Distribution: {column}", expanded=False) as stat_:
|
| 309 |
+
st.pyplot(plot_hist(df_, column, bins=int(round(len(df_[column].unique())-1)/2)))
|
| 310 |
+
|
| 311 |
+
elif is_object_dtype(df_[column]):
|
| 312 |
+
try:
|
| 313 |
+
df_[column] = pd.to_datetime(df_[column], infer_datetime_format=True, errors='coerce')
|
| 314 |
+
except Exception:
|
| 315 |
+
try:
|
| 316 |
+
df_[column] = df_[column].apply(parser.parse)
|
| 317 |
+
except Exception:
|
| 318 |
+
pass
|
| 319 |
+
|
| 320 |
+
if is_datetime64_any_dtype(df_[column]):
|
| 321 |
+
df_[column] = df_[column].dt.tz_localize(None)
|
| 322 |
+
min_date = df_[column].min().date()
|
| 323 |
+
max_date = df_[column].max().date()
|
| 324 |
+
user_date_input = right.date_input(
|
| 325 |
+
f"Values for {column}",
|
| 326 |
+
value=(min_date, max_date),
|
| 327 |
+
min_value=min_date,
|
| 328 |
+
max_value=max_date,
|
| 329 |
+
)
|
| 330 |
+
|
| 331 |
+
|
| 332 |
+
if len(user_date_input) == 2:
|
| 333 |
+
user_date_input = tuple(map(pd.to_datetime, user_date_input))
|
| 334 |
+
start_date, end_date = user_date_input
|
| 335 |
+
|
| 336 |
+
# Determine the most appropriate time unit for plot
|
| 337 |
+
time_units = {
|
| 338 |
+
'year': df_[column].dt.year,
|
| 339 |
+
'month': df_[column].dt.to_period('M'),
|
| 340 |
+
'day': df_[column].dt.date
|
| 341 |
+
}
|
| 342 |
+
unique_counts = {unit: col.nunique() for unit, col in time_units.items()}
|
| 343 |
+
closest_to_36 = min(unique_counts, key=lambda k: abs(unique_counts[k] - 36))
|
| 344 |
+
|
| 345 |
+
# Group by the most appropriate time unit and count occurrences
|
| 346 |
+
grouped = df_.groupby(time_units[closest_to_36]).size().reset_index(name='count')
|
| 347 |
+
grouped.columns = [column, 'count']
|
| 348 |
+
|
| 349 |
+
# Create a complete date range
|
| 350 |
+
if closest_to_36 == 'year':
|
| 351 |
+
date_range = pd.date_range(start=f"{start_date.year}-01-01", end=f"{end_date.year}-12-31", freq='YS')
|
| 352 |
+
elif closest_to_36 == 'month':
|
| 353 |
+
date_range = pd.date_range(start=start_date.replace(day=1), end=end_date + pd.offsets.MonthEnd(0), freq='MS')
|
| 354 |
+
else: # day
|
| 355 |
+
date_range = pd.date_range(start=start_date, end=end_date, freq='D')
|
| 356 |
+
|
| 357 |
+
# Create a DataFrame with the complete date range
|
| 358 |
+
complete_range = pd.DataFrame({column: date_range})
|
| 359 |
+
|
| 360 |
+
# Convert the date column to the appropriate format based on closest_to_36
|
| 361 |
+
if closest_to_36 == 'year':
|
| 362 |
+
complete_range[column] = complete_range[column].dt.year
|
| 363 |
+
elif closest_to_36 == 'month':
|
| 364 |
+
complete_range[column] = complete_range[column].dt.to_period('M')
|
| 365 |
+
|
| 366 |
+
# Merge the complete range with the grouped data
|
| 367 |
+
final_data = pd.merge(complete_range, grouped, on=column, how='left').fillna(0)
|
| 368 |
+
|
| 369 |
+
with st.status(f"Date Distributions: {column}", expanded=False) as stat:
|
| 370 |
+
try:
|
| 371 |
+
st.pyplot(plot_bar(final_data, column, 'count'))
|
| 372 |
+
except Exception as e:
|
| 373 |
+
st.error(f"Error plotting bar chart: {e}")
|
| 374 |
+
|
| 375 |
+
df_ = df_.loc[df_[column].between(start_date, end_date)]
|
| 376 |
+
|
| 377 |
+
date_column = column
|
| 378 |
+
|
| 379 |
+
if date_column and filtered_columns:
|
| 380 |
+
numeric_columns = [col for col in filtered_columns if is_numeric_dtype(df_[col])]
|
| 381 |
+
if numeric_columns:
|
| 382 |
+
fig = plot_line(df_, date_column, numeric_columns)
|
| 383 |
+
#st.pyplot(fig)
|
| 384 |
+
# now to deal with categorical columns
|
| 385 |
+
categorical_columns = [col for col in filtered_columns if is_categorical_dtype(df_[col])]
|
| 386 |
+
if categorical_columns:
|
| 387 |
+
fig2 = plot_bar(df_, date_column, categorical_columns[0])
|
| 388 |
+
#st.pyplot(fig2)
|
| 389 |
+
with st.status(f"Date Distribution: {column}", expanded=False) as stat:
|
| 390 |
+
try:
|
| 391 |
+
st.pyplot(fig)
|
| 392 |
+
except Exception as e:
|
| 393 |
+
st.error(f"Error plotting line chart: {e}")
|
| 394 |
+
pass
|
| 395 |
+
try:
|
| 396 |
+
st.pyplot(fig2)
|
| 397 |
+
except Exception as e:
|
| 398 |
+
st.error(f"Error plotting bar chart: {e}")
|
| 399 |
+
|
| 400 |
+
|
| 401 |
+
else:
|
| 402 |
+
user_text_input = right.text_input(
|
| 403 |
+
f"Substring or regex in {column}",
|
| 404 |
+
)
|
| 405 |
+
if user_text_input:
|
| 406 |
+
df_ = df_[df_[column].astype(str).str.contains(user_text_input)]
|
| 407 |
+
# write len of df after filtering with % of original
|
| 408 |
+
st.write(f"{len(df_)} rows ({len(df_) / len(df) * 100:.2f}%)")
|
| 409 |
+
return df_
|
| 410 |
+
|
| 411 |
+
|
| 412 |
+
def get_stations():
|
| 413 |
+
base_url = 'https://imag-data.bgs.ac.uk:/GIN_V1/GINServices?Request=GetCapabilities&format=json'
|
| 414 |
+
response = requests.get(base_url)
|
| 415 |
+
data = response.json()
|
| 416 |
+
dataframe_stations = pd.DataFrame.from_dict(data['ObservatoryList'])
|
| 417 |
+
return dataframe_stations
|
| 418 |
+
|
| 419 |
+
def get_haversine_distance(lat1, lon1, lat2, lon2):
|
| 420 |
+
R = 6371
|
| 421 |
+
dlat = math.radians(lat2 - lat1)
|
| 422 |
+
dlon = math.radians(lon2 - lon1)
|
| 423 |
+
a = math.sin(dlat/2) * math.sin(dlat/2) + math.cos(math.radians(lat1)) * math.cos(math.radians(lat2)) * math.sin(dlon/2) * math.sin(dlon/2)
|
| 424 |
+
c = 2 * math.atan2(math.sqrt(a), math.sqrt(1-a))
|
| 425 |
+
d = R * c
|
| 426 |
+
return d
|
| 427 |
+
|
| 428 |
+
def compare_stations(test_lat_lon, data_table, distance=1000, closest=False):
|
| 429 |
+
table_updated = pd.DataFrame()
|
| 430 |
+
distances = dict()
|
| 431 |
+
for lat,lon,names in data_table[['Latitude', 'Longitude', 'Name']].values:
|
| 432 |
+
harv_distance = get_haversine_distance(test_lat_lon[0], test_lat_lon[1], lat, lon)
|
| 433 |
+
if harv_distance < distance:
|
| 434 |
+
#print(f"Station {names} is at {round(harv_distance,2)} km from the test point")
|
| 435 |
+
table_updated = pd.concat([table_updated, data_table[data_table['Name'] == names]])
|
| 436 |
+
distances[names] = harv_distance
|
| 437 |
+
if closest:
|
| 438 |
+
closest_station = min(distances, key=distances.get)
|
| 439 |
+
#print(f"The closest station is {closest_station} at {round(distances[closest_station],2)} km")
|
| 440 |
+
table_updated = data_table[data_table['Name'] == closest_station]
|
| 441 |
+
table_updated['Distance'] = distances[closest_station]
|
| 442 |
+
return table_updated
|
| 443 |
+
|
| 444 |
+
def get_data(IagaCode, start_date, end_date):
|
| 445 |
+
try:
|
| 446 |
+
start_date_ = datetime.datetime.strptime(start_date, '%Y-%m-%d')
|
| 447 |
+
except ValueError as e:
|
| 448 |
+
print(f"Error: {e}")
|
| 449 |
+
start_date_ = pd.to_datetime(start_date)
|
| 450 |
+
try:
|
| 451 |
+
end_date_ = datetime.datetime.strptime(end_date, '%Y-%m-%d')
|
| 452 |
+
except ValueError as e:
|
| 453 |
+
print(f"Error: {e}")
|
| 454 |
+
end_date_ = pd.to_datetime(end_date)
|
| 455 |
+
|
| 456 |
+
duration = end_date_ - start_date_
|
| 457 |
+
# Define the parameters for the request
|
| 458 |
+
params = {
|
| 459 |
+
'Request': 'GetData',
|
| 460 |
+
'format': 'PNG',
|
| 461 |
+
'testObsys': '0',
|
| 462 |
+
'observatoryIagaCode': IagaCode,
|
| 463 |
+
'samplesPerDay': 'minute',
|
| 464 |
+
'publicationState': 'Best available',
|
| 465 |
+
'dataStartDate': start_date,
|
| 466 |
+
# make substraction
|
| 467 |
+
'dataDuration': duration.days,
|
| 468 |
+
'traceList': '1234',
|
| 469 |
+
'colourTraces': 'true',
|
| 470 |
+
'pictureSize': 'Automatic',
|
| 471 |
+
'dataScale': 'Automatic',
|
| 472 |
+
'pdfSize': '21,29.7',
|
| 473 |
+
}
|
| 474 |
+
|
| 475 |
+
base_url_json = 'https://imag-data.bgs.ac.uk:/GIN_V1/GINServices?Request=GetData&format=json'
|
| 476 |
+
#base_url_img = 'https://imag-data.bgs.ac.uk:/GIN_V1/GINServices?Request=GetData&format=png'
|
| 477 |
+
|
| 478 |
+
for base_url in [base_url_json]:#, base_url_img]:
|
| 479 |
+
response = requests.get(base_url, params=params)
|
| 480 |
+
if response.status_code == 200:
|
| 481 |
+
content_type = response.headers.get('Content-Type')
|
| 482 |
+
if 'image' in content_type:
|
| 483 |
+
# f"custom_plot_{new_dataset.iloc[0]['IagaCode']}_{str_date.replace(':', '_')}.png"
|
| 484 |
+
# output_image_path = "plot_image.png"
|
| 485 |
+
# with open(output_image_path, 'wb') as file:
|
| 486 |
+
# file.write(response.content)
|
| 487 |
+
# print(f"Image successfully saved as {output_image_path}")
|
| 488 |
+
|
| 489 |
+
# # Display the image
|
| 490 |
+
# img = mpimg.imread(output_image_path)
|
| 491 |
+
# plt.imshow(img)
|
| 492 |
+
# plt.axis('off') # Hide axes
|
| 493 |
+
# plt.show()
|
| 494 |
+
# img_answer = Image.open(output_image_path)
|
| 495 |
+
img_answer = None
|
| 496 |
+
else:
|
| 497 |
+
print(f"Unexpected content type: {content_type}")
|
| 498 |
+
#print("Response content:")
|
| 499 |
+
#print(response.content.decode('utf-8')) # Attempt to print response as text
|
| 500 |
+
# return json
|
| 501 |
+
answer = response.json()
|
| 502 |
+
else:
|
| 503 |
+
print(f"Failed to retrieve data. HTTP Status code: {response.status_code}")
|
| 504 |
+
print("Response content:")
|
| 505 |
+
print(response.content.decode('utf-8'))
|
| 506 |
+
return answer#, img_answer
|
| 507 |
+
|
| 508 |
+
|
| 509 |
+
# def get_data(IagaCode, start_date, end_date):
|
| 510 |
+
# # Convert dates to datetime
|
| 511 |
+
# try:
|
| 512 |
+
# start_date_ = pd.to_datetime(start_date)
|
| 513 |
+
# end_date_ = pd.to_datetime(end_date)
|
| 514 |
+
# except ValueError as e:
|
| 515 |
+
# print(f"Error: {e}")
|
| 516 |
+
# return None, None
|
| 517 |
+
|
| 518 |
+
# duration = (end_date_ - start_date_).days
|
| 519 |
+
|
| 520 |
+
# # Define the parameters for the request
|
| 521 |
+
# params = {
|
| 522 |
+
# 'Request': 'GetData',
|
| 523 |
+
# 'format': 'json',
|
| 524 |
+
# 'testObsys': '0',
|
| 525 |
+
# 'observatoryIagaCode': IagaCode,
|
| 526 |
+
# 'samplesPerDay': 'minute',
|
| 527 |
+
# 'publicationState': 'Best available',
|
| 528 |
+
# 'dataStartDate': start_date_.strftime('%Y-%m-%d'),
|
| 529 |
+
# 'dataDuration': duration,
|
| 530 |
+
# 'traceList': '1234',
|
| 531 |
+
# 'colourTraces': 'true',
|
| 532 |
+
# 'pictureSize': 'Automatic',
|
| 533 |
+
# 'dataScale': 'Automatic',
|
| 534 |
+
# 'pdfSize': '21,29.7',
|
| 535 |
+
# }
|
| 536 |
+
|
| 537 |
+
# base_url_json = 'https://imag-data.bgs.ac.uk:/GIN_V1/GINServices?Request=GetData&format=json'
|
| 538 |
+
# base_url_img = 'https://imag-data.bgs.ac.uk:/GIN_V1/GINServices?Request=GetData&format=png'
|
| 539 |
+
|
| 540 |
+
# try:
|
| 541 |
+
# # Request JSON data
|
| 542 |
+
# response_json = requests.get(base_url_json, params=params)
|
| 543 |
+
# response_json.raise_for_status() # Raises an error for bad status codes
|
| 544 |
+
# data = response_json.json()
|
| 545 |
+
|
| 546 |
+
# # Request Image
|
| 547 |
+
# params['format'] = 'png'
|
| 548 |
+
# response_img = requests.get(base_url_img, params=params)
|
| 549 |
+
# response_img.raise_for_status()
|
| 550 |
+
|
| 551 |
+
# # Save and display image if response is successful
|
| 552 |
+
# if 'image' in response_img.headers.get('Content-Type'):
|
| 553 |
+
# output_image_path = "plot_image.png"
|
| 554 |
+
# with open(output_image_path, 'wb') as file:
|
| 555 |
+
# file.write(response_img.content)
|
| 556 |
+
# print(f"Image successfully saved as {output_image_path}")
|
| 557 |
+
|
| 558 |
+
# img = mpimg.imread(output_image_path)
|
| 559 |
+
# plt.imshow(img)
|
| 560 |
+
# plt.axis('off')
|
| 561 |
+
# plt.show()
|
| 562 |
+
# img_answer = Image.open(output_image_path)
|
| 563 |
+
# else:
|
| 564 |
+
# img_answer = None
|
| 565 |
+
|
| 566 |
+
# return data, img_answer
|
| 567 |
+
|
| 568 |
+
# except requests.RequestException as e:
|
| 569 |
+
# print(f"Request failed: {e}")
|
| 570 |
+
# return None, None
|
| 571 |
+
# except ValueError as e:
|
| 572 |
+
# print(f"JSON decode error: {e}")
|
| 573 |
+
# return None, None
|
| 574 |
+
|
| 575 |
+
def clean_uap_data(dataset, lat, lon, date):
|
| 576 |
+
# Assuming 'nuforc' is already defined
|
| 577 |
+
processed = dataset[dataset[[lat, lon, date]].notnull().all(axis=1)]
|
| 578 |
+
# Converting 'Lat' and 'Long' columns to floats, handling errors
|
| 579 |
+
processed[lat] = pd.to_numeric(processed[lat], errors='coerce')
|
| 580 |
+
processed[lon] = pd.to_numeric(processed[lon], errors='coerce')
|
| 581 |
+
|
| 582 |
+
# if processed[date].min() < pd.to_datetime('1677-09-22'):
|
| 583 |
+
# processed.loc[processed[date] < pd.to_datetime('1677-09-22'), 'corrected_date'] = pd.to_datetime('1677-09-22 00:00:00')
|
| 584 |
+
|
| 585 |
+
procesed = processed[processed[date] >= '1677-09-22']
|
| 586 |
+
|
| 587 |
+
# convert date to str
|
| 588 |
+
#processed[date] = processed[date].astype(str)
|
| 589 |
+
# Dropping rows where 'Lat' or 'Long' conversion failed (i.e., became NaN)
|
| 590 |
+
processed = processed.dropna(subset=[lat, lon])
|
| 591 |
+
return processed
|
| 592 |
+
|
| 593 |
+
|
| 594 |
+
def plot_overlapped_timeseries(data_list, event_times, window_hours=12, save_path=None):
|
| 595 |
+
fig, axs = plt.subplots(4, 1, figsize=(12, 16), sharex=True)
|
| 596 |
+
fig.patch.set_alpha(0) # Make figure background transparent
|
| 597 |
+
|
| 598 |
+
components = ['X', 'Y', 'Z', 'S']
|
| 599 |
+
colors = ['red', 'green', 'blue', 'black']
|
| 600 |
+
|
| 601 |
+
for i, component in enumerate(components):
|
| 602 |
+
axs[i].patch.set_alpha(0) # Make subplot background transparent
|
| 603 |
+
axs[i].set_ylabel(component, color='orange')
|
| 604 |
+
axs[i].grid(True, color='orange', alpha=0.3)
|
| 605 |
+
|
| 606 |
+
for spine in axs[i].spines.values():
|
| 607 |
+
spine.set_color('orange')
|
| 608 |
+
|
| 609 |
+
axs[i].tick_params(axis='both', colors='orange') # Change tick color
|
| 610 |
+
axs[i].set_title(f'{component}', color='orange')
|
| 611 |
+
axs[i].set_xlabel('Time Difference from Event (hours)', color='orange')
|
| 612 |
+
|
| 613 |
+
for j, (df, event_time) in enumerate(zip(data_list, event_times)):
|
| 614 |
+
# Convert datetime column to UTC if it has timezone info, otherwise assume it's UTC
|
| 615 |
+
df['datetime'] = pd.to_datetime(df['datetime']).dt.tz_localize(None)
|
| 616 |
+
|
| 617 |
+
# Convert event_time to UTC if it has timezone info, otherwise assume it's UTC
|
| 618 |
+
event_time = pd.to_datetime(event_time).tz_localize(None)
|
| 619 |
+
|
| 620 |
+
# Calculate time difference from event
|
| 621 |
+
df['time_diff'] = (df['datetime'] - event_time).dt.total_seconds() / 3600 # Convert to hours
|
| 622 |
+
|
| 623 |
+
# Filter data within the specified window
|
| 624 |
+
df_window = df[(df['time_diff'] >= -window_hours) & (df['time_diff'] <= window_hours)]
|
| 625 |
+
|
| 626 |
+
# normalize component data
|
| 627 |
+
df_window[component] = (df_window[component] - df_window[component].mean()) / df_window[component].std()
|
| 628 |
+
|
| 629 |
+
axs[i].plot(df_window['time_diff'], df_window[component], color=colors[i], alpha=0.7, label=f'Event {j+1}', linewidth=1)
|
| 630 |
+
|
| 631 |
+
axs[i].axvline(x=0, color='red', linewidth=2, linestyle='--', label='Event Time')
|
| 632 |
+
axs[i].set_xlim(-window_hours, window_hours)
|
| 633 |
+
#axs[i].legend(loc='upper left', bbox_to_anchor=(1, 1))
|
| 634 |
+
|
| 635 |
+
axs[-1].set_xlabel('Hours from Event', color='orange')
|
| 636 |
+
fig.suptitle('Overlapped Time Series of Components', fontsize=16, color='orange')
|
| 637 |
+
|
| 638 |
+
plt.tight_layout()
|
| 639 |
+
plt.subplots_adjust(top=0.95, right=0.85)
|
| 640 |
+
|
| 641 |
+
if save_path:
|
| 642 |
+
fig.savefig(save_path, transparent=True, bbox_inches='tight')
|
| 643 |
+
plt.close(fig)
|
| 644 |
+
return save_path
|
| 645 |
+
else:
|
| 646 |
+
return fig
|
| 647 |
+
|
| 648 |
+
def plot_average_timeseries(data_list, event_times, window_hours=12, save_path=None):
|
| 649 |
+
fig, axs = plt.subplots(4, 1, figsize=(12, 16), sharex=True)
|
| 650 |
+
fig.patch.set_alpha(0) # Make figure background transparent
|
| 651 |
+
|
| 652 |
+
components = ['X', 'Y', 'Z', 'S']
|
| 653 |
+
colors = ['red', 'green', 'blue', 'black']
|
| 654 |
+
|
| 655 |
+
for i, component in enumerate(components):
|
| 656 |
+
axs[i].patch.set_alpha(0)
|
| 657 |
+
axs[i].set_ylabel(component, color='orange')
|
| 658 |
+
axs[i].grid(True, color='orange', alpha=0.3)
|
| 659 |
+
|
| 660 |
+
for spine in axs[i].spines.values():
|
| 661 |
+
spine.set_color('orange')
|
| 662 |
+
|
| 663 |
+
axs[i].tick_params(axis='both', colors='orange')
|
| 664 |
+
|
| 665 |
+
all_data = []
|
| 666 |
+
time_diffs = []
|
| 667 |
+
|
| 668 |
+
for j, (df, event_time) in enumerate(zip(data_list, event_times)):
|
| 669 |
+
# Convert datetime column to UTC if it has timezone info, otherwise assume it's UTC
|
| 670 |
+
df['datetime'] = pd.to_datetime(df['datetime']).dt.tz_localize(None)
|
| 671 |
+
|
| 672 |
+
# Convert event_time to UTC if it has timezone info, otherwise assume it's UTC
|
| 673 |
+
event_time = pd.to_datetime(event_time).tz_localize(None)
|
| 674 |
+
|
| 675 |
+
# Calculate time difference from event
|
| 676 |
+
df['time_diff'] = (df['datetime'] - event_time).dt.total_seconds() / 3600 # Convert to hours
|
| 677 |
+
|
| 678 |
+
# Filter data within the specified window
|
| 679 |
+
df_window = df[(df['time_diff'] >= -window_hours) & (df['time_diff'] <= window_hours)]
|
| 680 |
+
|
| 681 |
+
# Normalize component data
|
| 682 |
+
df_window[component] = (df_window[component] - df_window[component].mean())# / df_window[component].std()
|
| 683 |
+
|
| 684 |
+
all_data.append(df_window[component].values)
|
| 685 |
+
time_diffs.append(df_window['time_diff'].values)
|
| 686 |
+
|
| 687 |
+
# Calculate average and standard deviation
|
| 688 |
+
try:
|
| 689 |
+
avg_data = np.mean(all_data, axis=0)
|
| 690 |
+
except:
|
| 691 |
+
avg_data = np.zeros_like(all_data[0])
|
| 692 |
+
try:
|
| 693 |
+
std_data = np.std(all_data, axis=0)
|
| 694 |
+
except:
|
| 695 |
+
std_data = np.zeros_like(avg_data)
|
| 696 |
+
|
| 697 |
+
axs[-1].set_xlabel('Hours from Event', color='orange')
|
| 698 |
+
fig.suptitle('Average Time Series of Components', fontsize=16, color='orange')
|
| 699 |
+
|
| 700 |
+
# Plot average line
|
| 701 |
+
axs[i].plot(time_diffs[0], avg_data, color=colors[i], label='Average')
|
| 702 |
+
|
| 703 |
+
# Plot standard deviation as shaded region
|
| 704 |
+
try:
|
| 705 |
+
axs[i].fill_between(time_diffs[0], avg_data - std_data, avg_data + std_data, color=colors[i], alpha=0.2)
|
| 706 |
+
except:
|
| 707 |
+
pass
|
| 708 |
+
|
| 709 |
+
axs[i].axvline(x=0, color='red', linewidth=2, linestyle='--', label='Event Time')
|
| 710 |
+
axs[i].set_xlim(-window_hours, window_hours)
|
| 711 |
+
# orange frame, orange label legend
|
| 712 |
+
axs[i].legend(loc='upper right', bbox_to_anchor=(1, 1), facecolor='black', framealpha=.4, labelcolor='orange', edgecolor='orange')
|
| 713 |
+
|
| 714 |
+
plt.tight_layout()
|
| 715 |
+
plt.subplots_adjust(top=0.95, right=0.85)
|
| 716 |
+
|
| 717 |
+
if save_path:
|
| 718 |
+
fig.savefig(save_path, transparent=True, bbox_inches='tight')
|
| 719 |
+
plt.close(fig)
|
| 720 |
+
return save_path
|
| 721 |
+
else:
|
| 722 |
+
return fig
|
| 723 |
+
|
| 724 |
+
def align_series(reference, series):
|
| 725 |
+
reference = reference.flatten()
|
| 726 |
+
series = series.flatten()
|
| 727 |
+
_, path = fastdtw(reference, series, dist=euclidean)
|
| 728 |
+
aligned = np.zeros(len(reference))
|
| 729 |
+
for ref_idx, series_idx in path:
|
| 730 |
+
aligned[ref_idx] = series[series_idx]
|
| 731 |
+
return aligned
|
| 732 |
+
|
| 733 |
+
def plot_average_timeseries_with_dtw(data_list, event_times, window_hours=12, save_path=None):
|
| 734 |
+
fig, axs = plt.subplots(4, 1, figsize=(12, 16), sharex=True)
|
| 735 |
+
fig.patch.set_alpha(0) # Make figure background transparent
|
| 736 |
+
|
| 737 |
+
components = ['X', 'Y', 'Z', 'S']
|
| 738 |
+
colors = ['red', 'green', 'blue', 'black']
|
| 739 |
+
fig.text(0.02, 0.5, 'Geomagnetic Variation (nT)', va='center', rotation='vertical', color='orange')
|
| 740 |
+
|
| 741 |
+
|
| 742 |
+
for i, component in enumerate(components):
|
| 743 |
+
axs[i].patch.set_alpha(0)
|
| 744 |
+
axs[i].set_ylabel(component, color='orange', rotation=90)
|
| 745 |
+
axs[i].grid(True, color='orange', alpha=0.3)
|
| 746 |
+
|
| 747 |
+
for spine in axs[i].spines.values():
|
| 748 |
+
spine.set_color('orange')
|
| 749 |
+
|
| 750 |
+
axs[i].tick_params(axis='both', colors='orange')
|
| 751 |
+
|
| 752 |
+
all_aligned_data = []
|
| 753 |
+
reference_df = None
|
| 754 |
+
|
| 755 |
+
for j, (df, event_time) in enumerate(zip(data_list, event_times)):
|
| 756 |
+
df['datetime'] = pd.to_datetime(df['datetime']).dt.tz_localize(None)
|
| 757 |
+
event_time = pd.to_datetime(event_time).tz_localize(None)
|
| 758 |
+
df['time_diff'] = (df['datetime'] - event_time).dt.total_seconds() / 3600
|
| 759 |
+
df_window = df[(df['time_diff'] >= -window_hours) & (df['time_diff'] <= window_hours)]
|
| 760 |
+
df_window[component] = (df_window[component] - df_window[component].mean())# / df_window[component].std()
|
| 761 |
+
|
| 762 |
+
if reference_df is None:
|
| 763 |
+
reference_df = df_window
|
| 764 |
+
all_aligned_data.append(reference_df[component].values)
|
| 765 |
+
else:
|
| 766 |
+
try:
|
| 767 |
+
aligned_series = align_series(reference_df[component].values, df_window[component].values)
|
| 768 |
+
all_aligned_data.append(aligned_series)
|
| 769 |
+
except:
|
| 770 |
+
pass
|
| 771 |
+
|
| 772 |
+
# Calculate average and standard deviation of aligned data
|
| 773 |
+
all_aligned_data = np.array(all_aligned_data)
|
| 774 |
+
avg_data = np.mean(all_aligned_data, axis=0)
|
| 775 |
+
|
| 776 |
+
# round float to avoid sqrt errors
|
| 777 |
+
def calculate_std(data):
|
| 778 |
+
if data is not None and len(data) > 0:
|
| 779 |
+
data = np.array(data)
|
| 780 |
+
std_data = np.std(data)
|
| 781 |
+
return std_data
|
| 782 |
+
else:
|
| 783 |
+
return "Data is empty or not a list"
|
| 784 |
+
|
| 785 |
+
std_data = calculate_std(all_aligned_data)
|
| 786 |
+
|
| 787 |
+
# Plot average line
|
| 788 |
+
axs[i].plot(reference_df['time_diff'], avg_data, color=colors[i], label='Average')
|
| 789 |
+
|
| 790 |
+
# Plot standard deviation as shaded region
|
| 791 |
+
try:
|
| 792 |
+
axs[i].fill_between(reference_df['time_diff'], avg_data - std_data, avg_data + std_data, color=colors[i], alpha=0.2)
|
| 793 |
+
except TypeError as e:
|
| 794 |
+
#print(f"Error: {e}")
|
| 795 |
+
pass
|
| 796 |
+
|
| 797 |
+
|
| 798 |
+
axs[i].axvline(x=0, color='red', linewidth=2, linestyle='--', label='Event Time')
|
| 799 |
+
axs[i].set_xlim(-window_hours, window_hours)
|
| 800 |
+
axs[i].legend(loc='upper right', bbox_to_anchor=(1, 1), facecolor='black', framealpha=.2, labelcolor='orange', edgecolor='orange')
|
| 801 |
+
|
| 802 |
+
|
| 803 |
+
axs[-1].set_xlabel('Hours from Event', color='orange')
|
| 804 |
+
fig.suptitle('Average Time Series of Components (FastDTW Aligned)', fontsize=16, color='orange')
|
| 805 |
+
|
| 806 |
+
plt.tight_layout()
|
| 807 |
+
plt.subplots_adjust(top=0.85, right=0.85, left=0.1)
|
| 808 |
+
|
| 809 |
+
if save_path:
|
| 810 |
+
fig.savefig(save_path, transparent=True, bbox_inches='tight')
|
| 811 |
+
plt.close(fig)
|
| 812 |
+
return save_path
|
| 813 |
+
else:
|
| 814 |
+
return fig
|
| 815 |
+
|
| 816 |
+
def plot_data_custom(df, date, save_path=None, subtitle=None):
|
| 817 |
+
df['datetime'] = pd.to_datetime(df['datetime'])
|
| 818 |
+
event = pd.to_datetime(date)
|
| 819 |
+
window = timedelta(hours=12)
|
| 820 |
+
x_min = event - window
|
| 821 |
+
x_max = event + window
|
| 822 |
+
|
| 823 |
+
fig, axs = plt.subplots(4, 1, figsize=(12, 12), sharex=True)
|
| 824 |
+
fig.patch.set_alpha(0) # Make figure background transparent
|
| 825 |
+
|
| 826 |
+
components = ['X', 'Y', 'Z', 'S']
|
| 827 |
+
colors = ['red', 'green', 'blue', 'black']
|
| 828 |
+
|
| 829 |
+
fig.text(0.02, 0.5, 'Geomagnetic Variation (nT)', va='center', rotation='vertical', color='orange')
|
| 830 |
+
|
| 831 |
+
# if df[component].isnull().all().all():
|
| 832 |
+
# return None
|
| 833 |
+
|
| 834 |
+
for i, component in enumerate(components):
|
| 835 |
+
axs[i].plot(df['datetime'], df[component], label=component, color=colors[i])
|
| 836 |
+
axs[i].axvline(x=event, color='red', linewidth=2, label='Event', linestyle='--')
|
| 837 |
+
axs[i].set_ylabel(component, color='orange', rotation=90)
|
| 838 |
+
axs[i].set_xlim(x_min, x_max)
|
| 839 |
+
axs[i].legend(loc='upper right', bbox_to_anchor=(1, 1), facecolor='black', framealpha=.2, labelcolor='orange', edgecolor='orange')
|
| 840 |
+
axs[i].grid(True, color='orange', alpha=0.3)
|
| 841 |
+
axs[i].patch.set_alpha(0) # Make subplot background transparent
|
| 842 |
+
|
| 843 |
+
for spine in axs[i].spines.values():
|
| 844 |
+
spine.set_color('orange')
|
| 845 |
+
|
| 846 |
+
axs[i].xaxis.set_major_formatter(mdates.DateFormatter('%H:%M'))
|
| 847 |
+
axs[i].xaxis.set_major_locator(mdates.HourLocator(interval=1))
|
| 848 |
+
axs[i].tick_params(axis='both', colors='orange')
|
| 849 |
+
|
| 850 |
+
plt.setp(axs[-1].xaxis.get_majorticklabels(), rotation=45)
|
| 851 |
+
axs[-1].set_xlabel('Hours', color='orange')
|
| 852 |
+
fig.suptitle(f'Time Series of Components with Event Marks\n{subtitle}', fontsize=12, color='orange')
|
| 853 |
+
|
| 854 |
+
plt.tight_layout()
|
| 855 |
+
#plt.subplots_adjust(top=0.85)
|
| 856 |
+
plt.subplots_adjust(top=0.85, right=0.85, left=0.1)
|
| 857 |
+
|
| 858 |
+
|
| 859 |
+
if save_path:
|
| 860 |
+
fig.savefig(save_path, transparent=True)
|
| 861 |
+
plt.close(fig)
|
| 862 |
+
return save_path
|
| 863 |
+
else:
|
| 864 |
+
return fig
|
| 865 |
+
|
| 866 |
+
|
| 867 |
+
def batch_requests(stations, dataset, lon, lat, date, distance=100):
|
| 868 |
+
results = {"station": [], "data": [], "image": [], "custom_image": []}
|
| 869 |
+
all_data = []
|
| 870 |
+
all_event_times = []
|
| 871 |
+
|
| 872 |
+
for lon_, lat_, date_ in dataset[[lon, lat, date]].values:
|
| 873 |
+
test_lat_lon = (lat_, lon_)
|
| 874 |
+
try:
|
| 875 |
+
str_date = pd.to_datetime(date_).strftime('%Y-%m-%dT%H:%M:%S')
|
| 876 |
+
except:
|
| 877 |
+
str_date = date_
|
| 878 |
+
twelve_hours = pd.Timedelta(hours=12)
|
| 879 |
+
forty_eight_hours = pd.Timedelta(hours=48)
|
| 880 |
+
try:
|
| 881 |
+
str_date_start = (pd.to_datetime(str_date) - twelve_hours).strftime('%Y-%m-%dT%H:%M:%S')
|
| 882 |
+
str_date_end = (pd.to_datetime(str_date) + forty_eight_hours).strftime('%Y-%m-%dT%H:%M:%S')
|
| 883 |
+
except Exception as e:
|
| 884 |
+
print(f"Error: {e}")
|
| 885 |
+
pass
|
| 886 |
+
|
| 887 |
+
try:
|
| 888 |
+
new_dataset = compare_stations(test_lat_lon, stations, distance=distance, closest=True)
|
| 889 |
+
station_name = new_dataset['Name']
|
| 890 |
+
station_distance = new_dataset['Distance']
|
| 891 |
+
test_ = get_data(new_dataset.iloc[0]['IagaCode'], str_date_start, str_date_end)
|
| 892 |
+
|
| 893 |
+
if test_:
|
| 894 |
+
results["station"].append(new_dataset.iloc[0]['IagaCode'])
|
| 895 |
+
results["data"].append(test_)
|
| 896 |
+
plotted = pd.DataFrame({
|
| 897 |
+
'datetime': test_['datetime'],
|
| 898 |
+
'X': test_['X'],
|
| 899 |
+
'Y': test_['Y'],
|
| 900 |
+
'Z': test_['Z'],
|
| 901 |
+
'S': test_['S'],
|
| 902 |
+
})
|
| 903 |
+
all_data.append(plotted)
|
| 904 |
+
all_event_times.append(pd.to_datetime(date_))
|
| 905 |
+
# print(date_)
|
| 906 |
+
additional_data = f"Date: {date_}\nLat/Lon: {lat_}, {lon_}\nClosest station: {station_name.values[0]}\n Distance:{round(station_distance.values[0],2)} km"
|
| 907 |
+
fig = plot_data_custom(plotted, date=pd.to_datetime(date_), save_path=None, subtitle =additional_data)
|
| 908 |
+
with st.status(f'Magnetic Data: {date_}', expanded=False) as status:
|
| 909 |
+
st.pyplot(fig)
|
| 910 |
+
status.update(f'Magnetic Data: {date_} - Finished!')
|
| 911 |
+
except Exception as e:
|
| 912 |
+
#print(f"An error occurred: {e}")
|
| 913 |
+
pass
|
| 914 |
+
|
| 915 |
+
if all_data:
|
| 916 |
+
fig_overlapped = plot_overlapped_timeseries(all_data, all_event_times)
|
| 917 |
+
display(fig_overlapped)
|
| 918 |
+
plt.close(fig_overlapped)
|
| 919 |
+
# fig_average = plot_average_timeseries(all_data, all_event_times)
|
| 920 |
+
# st.pyplot(fig_average)
|
| 921 |
+
fig_average_aligned = plot_average_timeseries_with_dtw(all_data, all_event_times)
|
| 922 |
+
with st.status(f'Dynamic Time Warping Data', expanded=False) as stts:
|
| 923 |
+
st.pyplot(fig_average_aligned)
|
| 924 |
+
return results
|
| 925 |
+
|
| 926 |
+
|
| 927 |
+
df = pd.DataFrame()
|
| 928 |
+
|
| 929 |
+
|
| 930 |
+
# Upload dataset
|
| 931 |
+
uploaded_file = st.file_uploader("Choose a file", type=["csv", "xlsx"])
|
| 932 |
+
|
| 933 |
+
if uploaded_file is not None:
|
| 934 |
+
if uploaded_file.name.endswith('.csv'):
|
| 935 |
+
df = pd.read_csv(uploaded_file)
|
| 936 |
+
else:
|
| 937 |
+
df = pd.read_excel(uploaded_file)
|
| 938 |
+
stations = get_stations()
|
| 939 |
+
st.write("Dataset Loaded:")
|
| 940 |
+
df = filter_dataframe(df)
|
| 941 |
+
st.dataframe(df)
|
| 942 |
+
|
| 943 |
+
# Select columns
|
| 944 |
+
with st.form(border=True, key='Select Columns for Analysis'):
|
| 945 |
+
lon_col = st.selectbox("Select Longitude Column", df.columns)
|
| 946 |
+
lat_col = st.selectbox("Select Latitude Column", df.columns)
|
| 947 |
+
date_col = st.selectbox("Select Date Column", df.columns)
|
| 948 |
+
distance = st.number_input("Enter Distance", min_value=0, value=100)
|
| 949 |
+
if st.form_submit_button("Process Data"):
|
| 950 |
+
cases = clean_uap_data(df, lat_col, lon_col, date_col)
|
| 951 |
+
results = batch_requests(stations, cases, lon_col, lat_col, date_col, distance=distance)
|