Spaces:
Sleeping
Sleeping
File size: 18,282 Bytes
492569d 5d68d4f 16b5d3f e8e5773 5d68d4f eb5677d 16b5d3f eb5677d 16b5d3f eb5677d 5d68d4f 16b5d3f 5d68d4f 16b5d3f 5d68d4f 16b5d3f 5d68d4f 492569d 5d68d4f 16b5d3f 5d68d4f 492569d 16b5d3f 492569d 5d68d4f 492569d 5d68d4f 16b5d3f eb5677d 492569d eb5677d 16b5d3f 492569d 16b5d3f 5d68d4f 16b5d3f eb5677d 16b5d3f e8e5773 16b5d3f e8e5773 16b5d3f e8e5773 16b5d3f 5d68d4f 16b5d3f 5d68d4f 16b5d3f 492569d 16b5d3f 5d68d4f eb5677d 16b5d3f 5d68d4f 16b5d3f eb5677d 16b5d3f eb5677d 16b5d3f eb5677d 16b5d3f 5d68d4f 16b5d3f 5d68d4f 16b5d3f 492569d 16b5d3f 5d68d4f 16b5d3f eb5677d 16b5d3f eb5677d 16b5d3f 5d68d4f 16b5d3f 5d68d4f 16b5d3f eb5677d 16b5d3f eb5677d 16b5d3f eb5677d 16b5d3f eb5677d 16b5d3f 5d68d4f 16b5d3f eb5677d 16b5d3f 492569d 16b5d3f eb5677d 16b5d3f 492569d 16b5d3f 492569d eb5677d 16b5d3f 492569d 16b5d3f 492569d 16b5d3f 5d68d4f 16b5d3f 492569d |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 |
# scenario_engine.py
from __future__ import annotations
from typing import Dict, List, Any, Tuple, Optional, Iterable
import re, math, ast
import numpy as np
import pandas as pd
# ========= Robust role/column resolver (safe with pandas.Index) =========
try:
# If you have an external, richer resolver, we will use it automatically.
from column_resolver import resolve_one as _ext_resolve_one, resolve_cols as _ext_resolve_cols # type: ignore
_HAS_EXT_RESOLVER = True
except Exception:
_HAS_EXT_RESOLVER = False
_ROLE_SYNONYMS_FALLBACK = {
"facility": ["facility", "hospital", "centre", "center", "clinic", "site", "provider",
"settlement", "community", "location"],
"community": ["community", "settlement", "reserve", "town", "village", "city", "region", "area"],
"zone": ["zone", "region", "district", "area", "healthzone"],
"specialty": ["specialty", "programme", "program", "service", "discipline", "department"],
"period": ["period", "quarter", "year", "month", "time", "fiscal", "date"],
"city": ["city", "town", "village"],
"lat": ["latitude", "lat"],
"lon": ["longitude", "lon", "lng"],
"population": ["population", "members", "residents", "census"],
"prevalence": ["prevalence", "rate", "risk", "pct", "percentage"],
"volume": ["count", "visits", "clients", "volume", "n", "cases"],
"cost": ["cost", "expense", "spend", "budget", "perclient", "startup"],
"capacity": ["capacity", "throughput", "slots", "dailycapacity", "clientsperday"],
}
def _canon(s: str) -> str:
return re.sub(r"[^a-z0-9]+", "", (s or "").lower())
def _to_list(x: Iterable | None) -> List:
if x is None:
return []
try:
return list(x)
except Exception:
return [x]
def resolve_one(want: str, columns: Iterable[str]) -> Optional[str]:
"""Return best matching column for a semantic role or exact header. Safe for pandas.Index."""
cols = _to_list(columns)
if _HAS_EXT_RESOLVER:
try:
return _ext_resolve_one(want, cols)
except Exception:
pass
if not cols:
return None
wcanon = _canon(want)
if not wcanon:
return None
canon_cols = { _canon(c): c for c in cols if isinstance(c, str) }
if wcanon in canon_cols:
return canon_cols[wcanon]
syns = _ROLE_SYNONYMS_FALLBACK.get((want or "").lower(), [])
syns_canon = [_canon(s) for s in syns]
best, score = None, -1
for c in cols:
if not isinstance(c, str):
continue
cc = _canon(c)
sc = 0
if wcanon and (cc == wcanon or cc.startswith(wcanon) or wcanon in cc):
sc += 3
for s in syns_canon:
if not s:
continue
if cc == s:
sc += 5
elif cc.startswith(s):
sc += 3
elif s in cc:
sc += 2
if sc > score:
best, score = c, sc
return best if score >= 2 else None
def resolve_cols(requested: Iterable[str], columns: Iterable[str]) -> List[str]:
"""Resolve a list of roles/headers to existing columns, uniquely. Safe for pandas.Index."""
reqs = _to_list(requested)
cols = _to_list(columns)
if _HAS_EXT_RESOLVER:
try:
return _ext_resolve_cols(reqs, cols)
except Exception:
pass
out, seen = [], set()
for r in reqs:
col = resolve_one(r, cols)
if col and col not in seen:
out.append(col)
seen.add(col)
return out
# ========= Safe expression evaluation (filters/derivations) =========
_ALLOWED_FUNCS = {
"abs": abs, "round": round,
"sqrt": np.sqrt, "log": np.log, "exp": np.exp,
"min": np.minimum, "max": np.maximum,
"mean": np.mean, "avg": np.mean, "median": np.median, "sum": np.sum,
"count": lambda x: np.size(x),
"p50": lambda x: np.percentile(x, 50),
"p75": lambda x: np.percentile(x, 75),
"p90": lambda x: np.percentile(x, 90),
"p95": lambda x: np.percentile(x, 95),
}
class _SafeExpr(ast.NodeTransformer):
def __init__(self, allowed): self.allowed = allowed
def visit_Name(self, node):
if node.id not in self.allowed and node.id not in ("True","False","None"):
raise ValueError(f"Unknown name: {node.id}")
return node
def visit_Attribute(self, node):
raise ValueError("Attribute access is not allowed")
def visit_Call(self, node):
if not isinstance(node.func, ast.Name):
raise ValueError("Only simple function calls are allowed")
if node.func.id not in _ALLOWED_FUNCS:
raise ValueError(f"Function not allowed: {node.func.id}")
return self.generic_visit(node)
def generic_visit(self, node):
allowed = (
ast.Expression, ast.BoolOp, ast.BinOp, ast.UnaryOp, ast.Compare, ast.Call, ast.Name,
ast.Load, ast.Constant, ast.And, ast.Or, ast.Not, ast.Add, ast.Sub, ast.Mult, ast.Div,
ast.Mod, ast.Pow, ast.FloorDiv, ast.Eq, ast.NotEq, ast.Lt, ast.LtE, ast.Gt, ast.GtE,
ast.USub, ast.UAdd
)
if not isinstance(node, allowed):
raise ValueError(f"Unsupported syntax: {type(node).__name__}")
return super().generic_visit(node)
def _eval_series_expr(expr: str, df: pd.DataFrame) -> pd.Series:
names = set(df.columns) | {"True","False","None"}
tree = ast.parse(expr, mode="eval")
_SafeExpr(names).visit(tree)
code = compile(tree, "<expr>", "eval")
env = {**{k: df[k] for k in df.columns}, **_ALLOWED_FUNCS}
val = eval(code, {"__builtins__": {}}, env)
if isinstance(val, (pd.Series, np.ndarray, list)):
return pd.Series(val, index=df.index)
if isinstance(val, (bool, np.bool_)):
return pd.Series([val] * len(df), index=df.index)
raise ValueError("Expression must yield a vector or boolean")
# ========= Helpers =========
def _as_df(v: Any) -> Optional[pd.DataFrame]:
if isinstance(v, pd.DataFrame):
return v
if isinstance(v, list):
return pd.DataFrame(v) if v else pd.DataFrame()
if isinstance(v, dict):
flat = all(isinstance(val, (int,float,str,bool,type(None))) for val in v.values())
return pd.DataFrame([v]) if flat else pd.DataFrame()
return None
def _get_df(datasets: Dict[str, Any], key: Optional[str]) -> Optional[pd.DataFrame]:
if key and key in datasets:
v = datasets[key]
else:
v = next((vv for vv in datasets.values() if vv is not None), None)
return _as_df(v) if v is not None else None
def _auto_group_cols(df: pd.DataFrame) -> List[str]:
prefs = ["facility","community","settlement","provider","zone","region","district","specialty","program","service","city"]
for p in prefs:
col = resolve_one(p, _to_list(df.columns))
if col:
return [col]
obj_cols = [c for c in df.columns if df[c].dtype == "object"]
return obj_cols[:1] if obj_cols else []
def _parse_aggs(spec: Optional[str]) -> List[Tuple[str, str]]:
"""
"mean(wait_days), p90(wait_days), count(*)" -> [("mean_wait_days","mean(wait_days)"), ...]
bare token "wait_days" becomes mean(wait_days)
"""
if not spec:
return []
out: List[Tuple[str,str]] = []
for it in [x.strip() for x in spec.split(",") if x.strip()]:
if it.lower() in ("count", "count(*)"):
out.append(("count_*", "count(*)")); continue
m = re.match(r'([a-zA-Z_][a-zA-Z0-9_]*)\(([^)]+)\)', it)
if not m:
arg = it
out.append((f"mean_{arg}", f"mean({arg})"))
continue
func, arg = m.group(1).lower(), m.group(2).strip()
out.append((f"{func}_{arg}", f"{func}({arg})"))
return out
def _apply_agg_call(df: pd.DataFrame, call: str):
call = call.strip().lower()
if call in ("count", "count(*)"):
return int(len(df))
m = re.match(r'([a-z_][a-z0-9_]*)\(([^)]+)\)', call)
if not m:
arg = call
if arg not in df.columns: return None
col = pd.to_numeric(df[arg], errors="coerce").dropna()
return float(col.mean()) if len(col) else float("nan")
func, arg = m.group(1), m.group(2).strip()
if arg not in df.columns:
return None
col = pd.to_numeric(df[arg], errors="coerce").dropna()
if not len(col):
return float("nan")
if func in ("avg","mean"): return float(col.mean())
if func == "median": return float(np.median(col))
if func == "sum": return float(col.sum())
if func in ("min","max"): return float(getattr(np, func)(col))
if func.startswith("p") and func[1:].isdigit(): return float(np.percentile(col, int(func[1:])))
return None
def _apply_filter(df: pd.DataFrame, expr: str) -> pd.DataFrame:
m = _eval_series_expr(expr, df)
return df.loc[m.astype(bool)].copy()
def _apply_derive(df: pd.DataFrame, spec: str) -> pd.DataFrame:
# supports "newcol = expr, other = expr2"
parts = re.split(r'[;,]\s*', spec)
for p in parts:
if "=" in p:
col, expr = p.split("=", 1)
df[col.strip()] = _eval_series_expr(expr.strip(), df)
return df
def _render_table(df: pd.DataFrame) -> str:
if df is None or df.empty:
return "_No rows._"
dff = df.copy()
for c in dff.columns:
if pd.api.types.is_float_dtype(dff[c]) or pd.api.types.is_integer_dtype(dff[c]):
dff[c] = dff[c].apply(lambda v: "NaN" if (isinstance(v,float) and math.isnan(v)) else f"{v:,.4g}")
header = "| " + " | ".join(map(str, dff.columns)) + " |"
sep = "|" + "|".join(["---"] * len(dff.columns)) + "|"
rows = ["| " + " | ".join(map(str, r)) + " |" for r in dff.to_numpy().tolist()]
return "\n".join([header, sep, *rows])
def _small_n_flags(df: pd.DataFrame, count_col: Optional[str] = None, threshold: int = 5) -> Optional[pd.Series]:
if df is None or df.empty:
return None
if count_col and count_col in df.columns:
return df[count_col].apply(lambda n: " (interpret cautiously: small n)" if pd.notnull(n) and float(n) < threshold else "")
return None
def _missingness(df: pd.DataFrame, metric_cols: List[str]) -> List[str]:
notes = []
for c in metric_cols:
if c in df.columns:
miss = df[c].isna().mean()
if miss > 0:
notes.append(f"{c}: missing {miss:.1%}")
return notes
# ========= Scenario Engine =========
class ScenarioEngine:
"""
Execute a ScenarioPlan (or dict) consisting of tasks that specify:
- data_key: name of dataset in `datasets`
- filter: boolean/vectorized expression (safe-eval)
- derive: "new = expr, ..."
- group_by: list of roles/column names (resolved dynamically)
- agg: "mean(col), p90(col), count(*)" (bare 'col' => mean(col))
- sort_by / sort_dir
- top
- fields: project/alias output columns by role/name (resolved dynamically)
Returns markdown with:
- task section
- table output
- Assumptions & Mappings
- Data Quality notes
"""
@staticmethod
def _group_agg(df: pd.DataFrame,
group_by: Optional[List[str]],
agg_spec: Optional[str],
mapping_log: List[str]) -> pd.DataFrame:
# Resolve grouping to existing columns; tolerate roles or wrong names
if group_by:
gcols = resolve_cols(group_by, _to_list(df.columns))
for want in (group_by or []):
got = resolve_one(want, _to_list(df.columns))
mapping_log.append(f"group_by: {want} β {got if got else '(unresolved)'}")
else:
gcols = _auto_group_cols(df)
if gcols:
mapping_log.append(f"group_by: (auto) β {gcols[0]}")
else:
mapping_log.append("group_by: (auto) β (none)")
aggs = _parse_aggs(agg_spec or "")
# No grouping & no agg => just preview a slice
if not gcols:
if not aggs:
return df.head(50).copy()
rec = { out_col: _apply_agg_call(df, call) for out_col, call in aggs }
return pd.DataFrame([rec])
if not aggs:
# default: mean of numeric cols + count(*)
num_cols = list(df.select_dtypes(include="number").columns)
gb = df.groupby(gcols, dropna=False)
if not num_cols:
out = gb.size().reset_index(name="count_*")
return out.sort_values("count_*", ascending=False)
out = gb[num_cols].mean(numeric_only=True)
out["count_*"] = gb.size()
return out.reset_index()
# Apply requested aggs
rows = []
gb = df.groupby(gcols, dropna=False)
for keys, g in gb:
if not isinstance(keys, tuple): keys = (keys,)
rec = { gcols[i]: keys[i] for i in range(len(gcols)) }
for out_col, call in aggs:
rec[out_col] = _apply_agg_call(g, call)
rows.append(rec)
return pd.DataFrame(rows)
@staticmethod
def _project_fields(out_df: pd.DataFrame,
fields: Optional[List[str]],
mapping_log: List[str]) -> pd.DataFrame:
if not isinstance(out_df, pd.DataFrame) or out_df.empty or not fields:
return out_df
cols = resolve_cols(fields, _to_list(out_df.columns))
for want in fields:
got = resolve_one(want, _to_list(out_df.columns))
mapping_log.append(f"field: {want} β {got if got else '(unresolved)'}")
if cols:
return out_df[cols]
return out_df
@staticmethod
def _data_quality_notes(out_df: pd.DataFrame) -> List[str]:
notes: List[str] = []
if out_df is None or out_df.empty:
return notes
# small-n flag if a count column exists
cnt_col = None
for c in out_df.columns:
if c.lower() in ("count", "count_*", "n", "records"):
cnt_col = c; break
sn = _small_n_flags(out_df, count_col=cnt_col, threshold=5)
if sn is not None and sn.any():
n_small = (sn != "").sum()
if n_small > 0:
notes.append(f"{n_small} row(s) flagged as small-n (interpret cautiously).")
# missingness for numeric columns
metric_cols = [c for c in out_df.columns if pd.api.types.is_numeric_dtype(out_df[c])]
notes.extend(_missingness(out_df, metric_cols))
return notes
@staticmethod
def _exec_task(t: Any, datasets: Dict[str, Any]) -> str:
title = getattr(t, "title", None) or (isinstance(t, dict) and t.get("title")) or "Task"
section_lines: List[str] = [f"## {title}\n"]
data_key = getattr(t, "data_key", None) or (isinstance(t, dict) and t.get("data_key"))
df = _get_df(datasets, data_key)
if df is None or df.empty:
section_lines.append("_No matching data for this task._")
return "\n".join(section_lines)
# Filter(s)
t_filter = getattr(t, "filter", None) or (isinstance(t, dict) and t.get("filter"))
if t_filter:
try:
df = _apply_filter(df, t_filter)
except Exception as e:
section_lines.append(f"_Warning: filter ignored ({e})._")
# Derive(s)
t_derive = getattr(t, "derive", None) or (isinstance(t, dict) and t.get("derive"))
if t_derive:
for d in (t_derive if isinstance(t_derive, (list, tuple)) else [t_derive]):
try:
df = _apply_derive(df, d)
except Exception as e:
section_lines.append(f"_Warning: derive ignored ({e})._")
# Group/Agg
t_group_by = getattr(t, "group_by", None) or (isinstance(t, dict) and t.get("group_by"))
if isinstance(t_group_by, str):
t_group_by = [t_group_by]
t_agg = getattr(t, "agg", None) or (isinstance(t, dict) and t.get("agg"))
agg_spec = ", ".join(t_agg) if isinstance(t_agg, list) else (t_agg or None)
mapping_log: List[str] = []
out_df = ScenarioEngine._group_agg(df, t_group_by, agg_spec, mapping_log)
# Sort / Top
t_sort_by = getattr(t, "sort_by", None) or (isinstance(t, dict) and t.get("sort_by"))
t_sort_dir = (getattr(t, "sort_dir", None) or (isinstance(t, dict) and t.get("sort_dir")) or "desc").lower()
if isinstance(out_df, pd.DataFrame) and t_sort_by and t_sort_by in out_df.columns:
out_df = out_df.sort_values(t_sort_by, ascending=(t_sort_dir=="asc"))
t_top = getattr(t, "top", None) or (isinstance(t, dict) and t.get("top"))
if isinstance(out_df, pd.DataFrame) and isinstance(t_top, int) and t_top > 0:
out_df = out_df.head(t_top)
# Field projection
t_fields = getattr(t, "fields", None) or (isinstance(t, dict) and t.get("fields"))
if isinstance(t_fields, str):
t_fields = [t_fields]
out_df = ScenarioEngine._project_fields(out_df, t_fields, mapping_log)
# Render
section_lines.append(_render_table(out_df))
# Assumptions & Mappings
if mapping_log:
section_lines.append("\n**Assumptions & Mappings**")
for line in mapping_log:
section_lines.append(f"- {line}")
# Data quality
dq = ScenarioEngine._data_quality_notes(out_df)
if dq:
section_lines.append("\n**Data Quality Notes**")
for n in dq:
section_lines.append(f"- {n}")
return "\n".join(section_lines)
@staticmethod
def execute_plan(plan: Any, datasets: Dict[str, Any]) -> str:
"""
plan: object or dict with `tasks: List[Task]`
Each Task can have: title, data_key, filter, derive, group_by, agg, sort_by, sort_dir, top, fields
"""
sections: List[str] = ["# Scenario Output\n"]
tasks = getattr(plan, "tasks", None) or (isinstance(plan, dict) and plan.get("tasks")) or []
for t in tasks:
sections.append(ScenarioEngine._exec_task(t, datasets))
return "\n".join(sections).strip()
|