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| # app.py | |
| from __future__ import annotations | |
| import os | |
| import traceback | |
| import regex as re2 | |
| from typing import List, Tuple, Dict, Any | |
| import gradio as gr | |
| import pandas as pd | |
| # New additions for data analysis agent | |
| from langchain.agents.agent_types import AgentType | |
| from langchain_community.chat_models import ChatCohere | |
| from langchain_experimental.agents.agent_toolkits import create_pandas_dataframe_agent | |
| # ---- Local modules | |
| from settings import ( | |
| HEALTHCARE_SETTINGS, GENERAL_CONVERSATION_PROMPT, USE_SCENARIO_ENGINE, DEBUG_PLAN, | |
| COHERE_MODEL_PRIMARY, COHERE_TIMEOUT_S, USE_OPEN_FALLBACKS | |
| ) | |
| from audit_log import log_event | |
| from privacy import safety_filter, refusal_reply | |
| from data_registry import DataRegistry | |
| from upload_ingest import extract_text_from_files | |
| from healthcare_analysis import HealthcareAnalyzer | |
| from scenario_planner import parse_to_plan | |
| from scenario_engine import ScenarioEngine | |
| from rag import RAGIndex | |
| from llm_router import generate_narrative, cohere_chat, open_fallback_chat, _co_client, cohere_embed | |
| from narrative_safetynet import build_narrative | |
| # ---------------- Utilities ---------------- | |
| def _sanitize_text(s: str) -> str: | |
| if not isinstance(s, str): | |
| return s | |
| # remove non-printing/control chars except newlines & tabs | |
| return re2.sub(r'[\p{C}--[\n\t]]+', '', s) | |
| def _dataset_catalog(results: Dict[str, Any]) -> Dict[str, List[str]]: | |
| """Simple catalog of dataset columns for the planner prompt; dynamic & scenario-agnostic.""" | |
| cat: Dict[str, List[str]] = {} | |
| for k, v in results.items(): | |
| if isinstance(v, pd.DataFrame): | |
| cat[k] = v.columns.tolist() | |
| return cat | |
| def is_healthcare_scenario(text: str, has_files: bool) -> bool: | |
| """ | |
| Dynamic detection: require uploaded files AND either structured scenario sections | |
| or healthcare keywords (configured in settings). | |
| """ | |
| t = (text or "").lower() | |
| kws = HEALTHCARE_SETTINGS["healthcare_keywords"] | |
| structured = any(s in t for s in ["background", "situation", "tasks", "deliverables"]) | |
| return has_files and (structured or any(k in t for k in kws)) | |
| def _append_msg(history_messages: List[Dict[str, str]], role: str, content: str) -> List[Dict[str, str]]: | |
| return (history_messages or []) + [{"role": role, "content": content}] | |
| def ping_cohere() -> str: | |
| """Lightweight health check against Cohere (embeddings call).""" | |
| try: | |
| cli = _co_client() | |
| if not cli: | |
| return "Cohere client not initialized. Is COHERE_API_KEY set?" | |
| vecs = cohere_embed(["hello", "world"]) | |
| if vecs and len(vecs) == 2: | |
| return f"Cohere OK ✅ (model={COHERE_MODEL_PRIMARY}, timeout={COHERE_TIMEOUT_S}s)" | |
| return "Cohere reachable, but embeddings returned no vectors." | |
| except Exception as e: | |
| return f"Cohere ping failed: {e}" | |
| # ---------------- Core handler ---------------- | |
| def handle(user_msg: str, history_messages: List[Dict[str, str]], files: list) -> Tuple[List[Dict[str, str]], str]: | |
| """ | |
| One entrypoint for both healthcare scenarios and general conversation. | |
| - NEW: If files are uploaded, a data-aware agent is used to perform analysis. | |
| - Scenario mode (no files): planner -> deterministic executor -> LLM narrative (Cohere). | |
| - General mode: direct to Cohere with a light system prompt. | |
| """ | |
| try: | |
| # Safety filter for user input | |
| safe_in, blocked_in, reason_in = safety_filter(user_msg, mode="input") | |
| if blocked_in: | |
| reply = refusal_reply(reason_in) | |
| new_hist = _append_msg(history_messages, "user", user_msg) | |
| new_hist = _append_msg(new_hist, "assistant", reply) | |
| return new_hist, "" | |
| file_paths: List[str] = [getattr(f, "name", None) or f for f in (files or [])] | |
| # --- NEW LOGIC: Activate data agent if files are uploaded --- | |
| if file_paths: | |
| try: | |
| # Load the first uploaded CSV into a pandas DataFrame. | |
| df = pd.read_csv(file_paths[0]) | |
| # Initialize the Cohere Chat LLM for the agent | |
| llm = ChatCohere(model=COHERE_MODEL_PRIMARY, temperature=0) | |
| # --- AGGRESSIVE PROMPT ENGINEERING FIX --- | |
| # This new prefix explicitly forbids the LLM from outputting an Action and a Final Answer simultaneously. | |
| AGENT_PREFIX = """ | |
| You are a data analysis agent. You have a pandas dataframe named `df`. | |
| You MUST respond in one of two formats. | |
| FORMAT 1: To perform a task. Your response must be a single block of text with ONLY these three sections: | |
| Thought: Your step-by-step reasoning. | |
| Action: python_repl_ast | |
| Action Input: The Python code to run. | |
| FORMAT 2: To give the final answer. Your response must be a single block of text with ONLY these two sections: | |
| Thought: I can now answer the user's query. | |
| Final Answer: The complete answer. | |
| CRITICAL RULE: NEVER, EVER, combine `Action` and `Final Answer` in the same response. Choose one format. | |
| Begin by analyzing the user's query and provide your first thought and action using FORMAT 1. | |
| """ | |
| # Create the pandas DataFrame agent with our new, stricter prefix | |
| agent = create_pandas_dataframe_agent( | |
| llm, | |
| df, | |
| agent_type=AgentType.ZERO_SHOT_REACT_DESCRIPTION, | |
| verbose=True, | |
| allow_dangerous_code=True, | |
| handle_parsing_errors=True, | |
| prefix=AGENT_PREFIX | |
| ) | |
| # Run the agent with the user's scenario text. | |
| reply = agent.run(safe_in) | |
| reply = _sanitize_text(reply) | |
| except Exception as e: | |
| tb = traceback.format_exc() | |
| log_event("agent_error", None, {"err": str(e), "tb": tb}) | |
| reply = f"An error occurred while analyzing the data: {e}" | |
| # --- ORIGINAL LOGIC: Fallback for scenarios without files or general chat --- | |
| elif is_healthcare_scenario(safe_in, bool(file_paths)) and USE_SCENARIO_ENGINE: | |
| registry = DataRegistry() | |
| rag = RAGIndex() | |
| try: | |
| ing = extract_text_from_files(file_paths) | |
| rag.add(ing.get("chunks", [])) | |
| except Exception as e: | |
| log_event("rag_ingest_error", None, {"err": str(e)}) | |
| analyzer = HealthcareAnalyzer(registry) | |
| datasets = analyzer.comprehensive_analysis(safe_in) | |
| catalog = _dataset_catalog(datasets) | |
| plan = parse_to_plan(safe_in, catalog) | |
| structured_md = ScenarioEngine.execute_plan(plan, datasets) | |
| rag_hits = [txt for txt, _ in rag.retrieve(safe_in, k=6)] | |
| narrative = generate_narrative(safe_in, structured_md, rag_hits) | |
| if not narrative or "Unable to generate narrative" in narrative: | |
| narrative = build_narrative( | |
| scenario_text=safe_in, datasets=datasets, structured_tables=None, | |
| metric_hints=["surgery_median", "consult_median", "wait", "median", "p90", "90th"], | |
| group_hints=["facility", "specialty", "zone", "hospital", "city", "region"], | |
| min_sample=5 | |
| ) | |
| debug_note = f"\n\n> **Planner note:** {getattr(plan, 'notes', '')}" if DEBUG_PLAN and getattr(plan, "notes", None) else "" | |
| reply = _sanitize_text(f"{structured_md}\n\n# Narrative & Recommendations\n\n{narrative}{debug_note}") | |
| else: | |
| # General conversation mode (no files, not a structured scenario) | |
| prompt = f"{GENERAL_CONVERSATION_PROMPT}\n\nUser: {safe_in}\nAssistant:" | |
| reply = cohere_chat(prompt) or open_fallback_chat(prompt) or "How can I help further?" | |
| reply = _sanitize_text(reply) | |
| # Append interaction to chat history | |
| new_hist = _append_msg(history_messages, "user", user_msg) | |
| new_hist = _append_msg(new_hist, "assistant", reply) | |
| return new_hist, "" | |
| except Exception as e: | |
| tb = traceback.format_exc() | |
| log_event("app_error", None, {"err": str(e), "tb": tb}) | |
| new_hist = _append_msg(history_messages, "user", user_msg) | |
| new_hist = _append_msg(new_hist, "assistant", f"A critical error occurred: {e}\n\n{tb}") | |
| return new_hist, "" | |
| # ---------------- UI ---------------- | |
| with gr.Blocks(analytics_enabled=False) as demo: | |
| gr.Markdown("## Canadian Healthcare AI • Cohere API • Scenario-Agnostic • Deterministic Analytics") | |
| with gr.Row(): | |
| chat = gr.Chatbot(label="Chat History", type="messages", height=520) | |
| files = gr.Files( | |
| label="Upload Data Files (CSV recommended)", | |
| file_count="multiple", | |
| type="filepath", | |
| file_types=HEALTHCARE_SETTINGS["supported_file_types"] | |
| ) | |
| msg = gr.Textbox(label="Prompt", placeholder="Paste any scenario (Background / Situation / Tasks / Deliverables) or just chat.") | |
| with gr.Row(): | |
| send = gr.Button("Send") | |
| clear = gr.Button("Clear") | |
| ping_btn = gr.Button("Ping Cohere") | |
| ping_out = gr.Markdown() | |
| def _on_send(m, h, f): | |
| h2, _ = handle(m, h, f or []) | |
| return h2, "" | |
| send.click(_on_send, inputs=[msg, chat, files], outputs=[chat, msg]) | |
| msg.submit(_on_send, inputs=[msg, chat, files], outputs=[chat, msg]) | |
| clear.click(lambda: ([], "", None), outputs=[chat, msg, files]) | |
| ping_btn.click(lambda: ping_cohere(), outputs=[ping_out]) | |
| if __name__ == "__main__": | |
| if not os.getenv("COHERE_API_KEY"): | |
| print("🔴 COHERE_API_KEY environment variable not set. Application may not function correctly.") | |
| log_event("startup", None, { | |
| "cohere_key_present": bool(os.getenv("COHERE_API_KEY")), | |
| "cohere_model": COHERE_MODEL_PRIMARY, | |
| "open_fallbacks": USE_OPEN_FALLBACKS, | |
| "timeout_s": COHERE_TIMEOUT_S | |
| }) | |
| demo.launch(server_name="0.0.0.0", server_port=int(os.getenv("PORT", "7860"))) |