Rajan Sharma
Update app.py
c99015b verified
raw
history blame
9.55 kB
# app.py
# app.py
from __future__ import annotations
import os
import traceback
import regex as re2
from typing import List, Tuple, Dict, Any
import gradio as gr
import pandas as pd
# New additions for data analysis agent
from langchain.agents.agent_types import AgentType
from langchain_community.chat_models import ChatCohere
from langchain_experimental.agents.agent_toolkits import create_pandas_dataframe_agent
# ---- Local modules
from settings import (
HEALTHCARE_SETTINGS, GENERAL_CONVERSATION_PROMPT, USE_SCENARIO_ENGINE, DEBUG_PLAN,
COHERE_MODEL_PRIMARY, COHERE_TIMEOUT_S, USE_OPEN_FALLBACKS
)
from audit_log import log_event
from privacy import safety_filter, refusal_reply
from data_registry import DataRegistry
from upload_ingest import extract_text_from_files
from healthcare_analysis import HealthcareAnalyzer
from scenario_planner import parse_to_plan
from scenario_engine import ScenarioEngine
from rag import RAGIndex
from llm_router import generate_narrative, cohere_chat, open_fallback_chat, _co_client, cohere_embed
from narrative_safetynet import build_narrative
# ---------------- Utilities ----------------
def _sanitize_text(s: str) -> str:
if not isinstance(s, str):
return s
# remove non-printing/control chars except newlines & tabs
return re2.sub(r'[\p{C}--[\n\t]]+', '', s)
def _dataset_catalog(results: Dict[str, Any]) -> Dict[str, List[str]]:
"""Simple catalog of dataset columns for the planner prompt; dynamic & scenario-agnostic."""
cat: Dict[str, List[str]] = {}
for k, v in results.items():
if isinstance(v, pd.DataFrame):
cat[k] = v.columns.tolist()
return cat
def is_healthcare_scenario(text: str, has_files: bool) -> bool:
"""
Dynamic detection: require uploaded files AND either structured scenario sections
or healthcare keywords (configured in settings).
"""
t = (text or "").lower()
kws = HEALTHCARE_SETTINGS["healthcare_keywords"]
structured = any(s in t for s in ["background", "situation", "tasks", "deliverables"])
return has_files and (structured or any(k in t for k in kws))
def _append_msg(history_messages: List[Dict[str, str]], role: str, content: str) -> List[Dict[str, str]]:
return (history_messages or []) + [{"role": role, "content": content}]
def ping_cohere() -> str:
"""Lightweight health check against Cohere (embeddings call)."""
try:
cli = _co_client()
if not cli:
return "Cohere client not initialized. Is COHERE_API_KEY set?"
vecs = cohere_embed(["hello", "world"])
if vecs and len(vecs) == 2:
return f"Cohere OK ✅ (model={COHERE_MODEL_PRIMARY}, timeout={COHERE_TIMEOUT_S}s)"
return "Cohere reachable, but embeddings returned no vectors."
except Exception as e:
return f"Cohere ping failed: {e}"
# ---------------- Core handler ----------------
def handle(user_msg: str, history_messages: List[Dict[str, str]], files: list) -> Tuple[List[Dict[str, str]], str]:
"""
One entrypoint for both healthcare scenarios and general conversation.
- NEW: If files are uploaded, a data-aware agent is used to perform analysis.
- Scenario mode (no files): planner -> deterministic executor -> LLM narrative (Cohere).
- General mode: direct to Cohere with a light system prompt.
"""
try:
# Safety filter for user input
safe_in, blocked_in, reason_in = safety_filter(user_msg, mode="input")
if blocked_in:
reply = refusal_reply(reason_in)
new_hist = _append_msg(history_messages, "user", user_msg)
new_hist = _append_msg(new_hist, "assistant", reply)
return new_hist, ""
file_paths: List[str] = [getattr(f, "name", None) or f for f in (files or [])]
# --- NEW LOGIC: Activate data agent if files are uploaded ---
if file_paths:
try:
# For this example, we'll load the first CSV file.
# This can be extended to handle multiple DataFrames.
df = pd.read_csv(file_paths[0])
# Initialize the Cohere Chat LLM for the agent
llm = ChatCohere(model=COHERE_MODEL_PRIMARY, temperature=0)
# Create the pandas DataFrame agent, powered by Cohere
agent = create_pandas_dataframe_agent(
llm,
df,
agent_type=AgentType.OPENAI_FUNCTIONS, # Recommended for reliability
verbose=True # Set to False in production
)
# Run the agent with the user's scenario text. The agent will
# write and execute code to answer the query based on the dataframe.
reply = agent.run(safe_in)
reply = _sanitize_text(reply)
except Exception as e:
tb = traceback.format_exc()
log_event("agent_error", None, {"err": str(e), "tb": tb})
reply = f"An error occurred while analyzing the data: {e}"
# --- ORIGINAL LOGIC: Fallback for scenarios without files or general chat ---
elif is_healthcare_scenario(safe_in, bool(file_paths)) and USE_SCENARIO_ENGINE:
# This block now primarily handles scenarios where no data files are provided,
# relying on the original deterministic analysis logic.
registry = DataRegistry() # This part might be simplified if files always trigger the agent
rag = RAGIndex()
try:
ing = extract_text_from_files(file_paths) # For text extraction from markdown/txt
rag.add(ing.get("chunks", []))
except Exception as e:
log_event("rag_ingest_error", None, {"err": str(e)})
analyzer = HealthcareAnalyzer(registry)
datasets = analyzer.comprehensive_analysis(safe_in)
catalog = _dataset_catalog(datasets)
plan = parse_to_plan(safe_in, catalog)
structured_md = ScenarioEngine.execute_plan(plan, datasets)
rag_hits = [txt for txt, _ in rag.retrieve(safe_in, k=6)]
narrative = generate_narrative(safe_in, structured_md, rag_hits)
if not narrative or "Unable to generate narrative" in narrative:
narrative = build_narrative(
scenario_text=safe_in, datasets=datasets, structured_tables=None,
metric_hints=["surgery_median", "consult_median", "wait", "median", "p90", "90th"],
group_hints=["facility", "specialty", "zone", "hospital", "city", "region"],
min_sample=5
)
debug_note = f"\n\n> **Planner note:** {getattr(plan, 'notes', '')}" if DEBUG_PLAN and getattr(plan, "notes", None) else ""
reply = _sanitize_text(f"{structured_md}\n\n# Narrative & Recommendations\n\n{narrative}{debug_note}")
else:
# General conversation mode (no files, not a structured scenario)
prompt = f"{GENERAL_CONVERSATION_PROMPT}\n\nUser: {safe_in}\nAssistant:"
reply = cohere_chat(prompt) or open_fallback_chat(prompt) or "How can I help further?"
reply = _sanitize_text(reply)
# Append interaction to chat history
new_hist = _append_msg(history_messages, "user", user_msg)
new_hist = _append_msg(new_hist, "assistant", reply)
return new_hist, ""
except Exception as e:
tb = traceback.format_exc()
log_event("app_error", None, {"err": str(e), "tb": tb})
new_hist = _append_msg(history_messages, "user", user_msg)
new_hist = _append_msg(new_hist, "assistant", f"A critical error occurred: {e}\n\n{tb}")
return new_hist, ""
# ---------------- UI ----------------
with gr.Blocks(analytics_enabled=False) as demo:
gr.Markdown("## Canadian Healthcare AI • Cohere API • Scenario-Agnostic • Deterministic Analytics")
with gr.Row():
chat = gr.Chatbot(label="Chat History", type="messages", height=520)
files = gr.Files(
label="Upload Data Files (CSV recommended)",
file_count="multiple",
type="filepath",
file_types=HEALTHCARE_SETTINGS["supported_file_types"]
)
msg = gr.Textbox(label="Prompt", placeholder="Paste any scenario (Background / Situation / Tasks / Deliverables) or just chat.")
with gr.Row():
send = gr.Button("Send")
clear = gr.Button("Clear")
ping_btn = gr.Button("Ping Cohere")
ping_out = gr.Markdown()
def _on_send(m, h, f):
h2, _ = handle(m, h or [], f or [])
return h2, ""
send.click(_on_send, inputs=[msg, chat, files], outputs=[chat, msg])
msg.submit(_on_send, inputs=[msg, chat, files], outputs=[chat, msg])
clear.click(lambda: ([], "", None), outputs=[chat, msg, files])
ping_btn.click(lambda: ping_cohere(), outputs=[ping_out])
if __name__ == "__main__":
# Ensure you have your COHERE_API_KEY set as an environment variable
if not os.getenv("COHERE_API_KEY"):
print("🔴 COHERE_API_KEY environment variable not set. Application may not function correctly.")
log_event("startup", None, {
"cohere_key_present": bool(os.getenv("COHERE_API_KEY")),
"cohere_model": COHERE_MODEL_PRIMARY,
"open_fallbacks": USE_OPEN_FALLBACKS,
"timeout_s": COHERE_TIMEOUT_S
})
demo.launch(server_name="0.0.0.0", server_port=int(os.getenv("PORT", "7860")))