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Rajan Sharma
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Update healthcare_analysis.py
Browse files- healthcare_analysis.py +87 -62
healthcare_analysis.py
CHANGED
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@@ -82,11 +82,12 @@ class HealthcareAnalyzer:
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# Look for region names in the scenario
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regions = []
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#
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region_patterns = [
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r'([A-Z][a-z]+ (Zone|Region|Area|District))',
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r'(North|South|East|West|Central
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r'(
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]
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import re
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@@ -115,13 +116,13 @@ class HealthcareAnalyzer:
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if df is None or df.empty:
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continue
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# Filter data based on geographic scope
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filtered_df = self._filter_by_geography(df, geographic_scope, regions)
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if filtered_df.empty:
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continue
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# Facility type distribution
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type_col = self._find_column(filtered_df, ['type', 'category', 'class', 'facility_type', 'odhf_facility_type'])
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if type_col:
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# Ensure we're working with string data
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@@ -133,7 +134,7 @@ class HealthcareAnalyzer:
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diversity = self._calculate_diversity_index(type_dist)
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results["facility_diversity"] = diversity
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# Geographic distribution
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geo_col = self._find_column(filtered_df, ['province', 'state', 'region', 'zone', 'area'])
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if geo_col:
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# Ensure we're working with string data
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@@ -145,7 +146,7 @@ class HealthcareAnalyzer:
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gini = self._calculate_gini(list(geo_dist.values()))
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results["geographic_inequality"] = gini
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# City distribution
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city_col = self._find_column(filtered_df, ['city', 'municipality', 'town'])
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if city_col:
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# Ensure we're working with string data
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@@ -179,13 +180,13 @@ class HealthcareAnalyzer:
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if df is None or df.empty:
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continue
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# Filter data based on geographic scope
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filtered_df = self._filter_by_geography(df, geographic_scope, regions)
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if filtered_df.empty:
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continue
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# Current capacity
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capacity_col = self._find_column(filtered_df, ['capacity', 'beds', 'current_capacity', 'beds_current'])
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if capacity_col:
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# Ensure we're working with numeric data
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@@ -212,7 +213,7 @@ class HealthcareAnalyzer:
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utilization_by_type = filtered_df.groupby(type_col)[utilization_col].mean().to_dict()
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results["utilization_by_type"] = utilization_by_type
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# Capacity trends
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time_cols = [col for col in filtered_df.columns if any(year in col.lower() for year in ['2020', '2021', '2022', '2023', '2024'])]
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if len(time_cols) >= 2:
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trend_data = {}
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@@ -230,7 +231,7 @@ class HealthcareAnalyzer:
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growth_rate = (trend_data[latest] - trend_data[earliest]) / trend_data[earliest] * 100
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results["capacity_growth_rate"] = growth_rate
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# Bed change analysis
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prev_col = self._find_column(filtered_df, ['prev', 'previous', '2022', 'beds_prev', 'previous_beds'])
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current_col = self._find_column(filtered_df, ['current', '2023', '2024', 'beds_current', 'staffed_beds', 'capacity'])
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@@ -248,7 +249,7 @@ class HealthcareAnalyzer:
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axis=1
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)
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# Zone/Region-level analysis
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zone_col = self._find_column(filtered_df, ['zone', 'region', 'area', 'district'])
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if zone_col:
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# Ensure we're working with string data
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@@ -289,67 +290,86 @@ class HealthcareAnalyzer:
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return results
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def _filter_by_geography(self, df: pd.DataFrame, geographic_scope: str, regions: List[str]) -> pd.DataFrame:
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"""Filter dataframe based on geographic scope and regions"""
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if geographic_scope == "Unknown" and not regions:
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return df.copy()
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# Try to find a geographic column
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geo_col = self._find_column(df, ['province', 'state', 'region', 'zone', 'area', 'district'])
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if geo_col is None:
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return df.copy()
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# Ensure we're working with string data
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-
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# Create filters
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filters = []
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# Add geographic scope filter
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if geographic_scope != "Unknown":
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# Create a list of possible values for the geographic scope
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scope_values = [geographic_scope.lower()]
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# Add common abbreviations
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abbreviations = {
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-
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"british columbia": "bc",
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"
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"
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}
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if geographic_scope.lower() in abbreviations:
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scope_values.append(abbreviations[geographic_scope.lower()])
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-
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# Add region filters
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if regions:
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# Apply filters
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if filters:
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return df.copy()
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def analyze_resource_allocation(self, relevant_data: List[str]) -> Dict[str, Any]:
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"""Analyze resource allocation patterns"""
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results = {}
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for data_name in relevant_data:
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@@ -357,7 +377,7 @@ class HealthcareAnalyzer:
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if df is None or df.empty:
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continue
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# Staff analysis
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staff_col = self._find_column(df, ['staff', 'employees', 'fte'])
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if staff_col:
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# Ensure we're working with numeric data
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@@ -374,7 +394,7 @@ class HealthcareAnalyzer:
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avg_staff_per_bed = df['staff_per_bed'].mean()
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results["staff_per_bed_ratio"] = avg_staff_per_bed
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# Equipment analysis
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equipment_cols = [col for col in df.columns if 'equipment' in col.lower()]
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if equipment_cols:
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equipment_summary = {}
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@@ -387,7 +407,7 @@ class HealthcareAnalyzer:
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return results
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def analyze_trends(self, relevant_data: List[str]) -> Dict[str, Any]:
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"""Analyze trends in healthcare data"""
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results = {}
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for data_name in relevant_data:
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if df is None or df.empty:
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continue
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# Find time-based columns
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time_cols = [col for col in df.columns if any(year in col.lower() for year in ['2020', '2021', '2022', '2023', '2024'])]
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if len(time_cols) >= 2:
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return results
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def generate_recommendations(self, analysis_results: Dict[str, Any], requirements: Dict[str, Any]) -> List[Dict[str, str]]:
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"""Generate data-driven operational recommendations"""
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recommendations = []
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geographic_scope = requirements.get("geographic_scope", "the region")
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"data_source": "Capacity trend analysis"
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})
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# Zone-specific recommendations
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if "max_percentage_decrease" in capacity and isinstance(capacity["max_percentage_decrease"], dict):
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decrease = capacity["max_percentage_decrease"].get("percent_change", 0)
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if
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recommendations.append({
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"title": f"Address Capacity Decline in {
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"description": f"{
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"priority": "High",
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"data_source": "Zone capacity analysis"
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})
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return recommendations
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def identify_integration_opportunities(self, analysis_results: Dict[str, Any]) -> Dict[str, Any]:
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"""Identify opportunities for AI integration and data enhancement"""
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opportunities = {
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"data_integration": [],
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"ai_applications": [],
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# Helper methods
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def _find_column(self, df, patterns):
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"""Find the first column matching any pattern"""
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if df is None or df.empty:
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return None
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for col in df.columns:
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return None
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def _calculate_gini(self, values):
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"""Calculate Gini coefficient for inequality measurement"""
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if not values or len(values) < 2:
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return 0
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return gini
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def _calculate_diversity_index(self, distribution):
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"""Calculate Shannon diversity index"""
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if not distribution:
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return 0
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return -sum(p * np.log(p) for p in proportions)
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def _extract_geographic_scope(self, text):
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"""Extract geographic scope from text"""
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# Look for province/state names
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provinces = [
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"alberta", "british columbia", "ontario", "quebec", "manitoba",
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"saskatchewan", "nova scotia", "new brunswick", "prince edward island",
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return "Unknown"
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def _extract_time_period(self, text):
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"""Extract time period from text"""
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# Look for year patterns
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import re
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years = re.findall(r'\b(20\d{2})\b', text)
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return "Unknown"
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def _extract_facility_types(self, text):
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"""Extract facility types from text"""
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types = []
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if "hospital" in text.lower():
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types.append("Hospitals")
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return types
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def _extract_metrics(self, text):
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"""Extract required metrics from text"""
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metrics = []
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if "bed" in text.lower():
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metrics.append("Bed capacity")
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return metrics
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def _identify_relevant_data(self, text):
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"""Identify relevant datasets for the scenario"""
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# Use data registry's find_related_datasets method
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keywords = ["facility", "bed", "capacity", "healthcare", "hospital"]
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return [item["name"] for item in self.data_registry.find_related_datasets(keywords)]
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# Look for region names in the scenario
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regions = []
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# Generic region patterns - works for any healthcare scenario
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region_patterns = [
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r'([A-Z][a-z]+ (Zone|Region|Area|District))',
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r'(North|South|East|West|Central)',
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r'([A-Z][a-z]+ (City|County|State|Province))',
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r'([A-Z][a-z]+)'
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]
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import re
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if df is None or df.empty:
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continue
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# Filter data based on geographic scope - generic approach
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filtered_df = self._filter_by_geography(df, geographic_scope, regions)
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if filtered_df.empty:
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continue
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# Facility type distribution - generic column finding
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type_col = self._find_column(filtered_df, ['type', 'category', 'class', 'facility_type', 'odhf_facility_type'])
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if type_col:
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# Ensure we're working with string data
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diversity = self._calculate_diversity_index(type_dist)
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results["facility_diversity"] = diversity
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# Geographic distribution - generic column finding
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geo_col = self._find_column(filtered_df, ['province', 'state', 'region', 'zone', 'area'])
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if geo_col:
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# Ensure we're working with string data
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gini = self._calculate_gini(list(geo_dist.values()))
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results["geographic_inequality"] = gini
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# City distribution - generic column finding
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city_col = self._find_column(filtered_df, ['city', 'municipality', 'town'])
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if city_col:
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# Ensure we're working with string data
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if df is None or df.empty:
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continue
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# Filter data based on geographic scope - generic approach
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filtered_df = self._filter_by_geography(df, geographic_scope, regions)
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if filtered_df.empty:
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continue
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# Current capacity - generic column finding
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capacity_col = self._find_column(filtered_df, ['capacity', 'beds', 'current_capacity', 'beds_current'])
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if capacity_col:
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# Ensure we're working with numeric data
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utilization_by_type = filtered_df.groupby(type_col)[utilization_col].mean().to_dict()
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results["utilization_by_type"] = utilization_by_type
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# Capacity trends - generic approach for time columns
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time_cols = [col for col in filtered_df.columns if any(year in col.lower() for year in ['2020', '2021', '2022', '2023', '2024'])]
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if len(time_cols) >= 2:
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trend_data = {}
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growth_rate = (trend_data[latest] - trend_data[earliest]) / trend_data[earliest] * 100
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results["capacity_growth_rate"] = growth_rate
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# Bed change analysis - generic column finding
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prev_col = self._find_column(filtered_df, ['prev', 'previous', '2022', 'beds_prev', 'previous_beds'])
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current_col = self._find_column(filtered_df, ['current', '2023', '2024', 'beds_current', 'staffed_beds', 'capacity'])
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axis=1
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)
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# Zone/Region-level analysis - generic column finding
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zone_col = self._find_column(filtered_df, ['zone', 'region', 'area', 'district'])
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if zone_col:
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# Ensure we're working with string data
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return results
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def _filter_by_geography(self, df: pd.DataFrame, geographic_scope: str, regions: List[str]) -> pd.DataFrame:
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"""Filter dataframe based on geographic scope and regions - generic approach"""
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if geographic_scope == "Unknown" and not regions:
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return df.copy()
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# Try to find a geographic column - generic approach
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geo_col = self._find_column(df, ['province', 'state', 'region', 'zone', 'area', 'district'])
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if geo_col is None:
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return df.copy()
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# Ensure we're working with string data
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try:
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df[geo_col] = df[geo_col].astype(str)
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except Exception as e:
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logger.warning(f"Error converting column {geo_col} to string: {str(e)}")
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return df.copy()
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# Create filters
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filters = []
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# Add geographic scope filter - generic approach
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if geographic_scope != "Unknown":
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# Create a list of possible values for the geographic scope
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scope_values = [geographic_scope.lower()]
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# Add common abbreviations - generic for any region
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abbreviations = {
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# Canadian provinces
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"alberta": "ab", "british columbia": "bc", "ontario": "on", "quebec": "qc",
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"manitoba": "mb", "saskatchewan": "sk", "nova scotia": "ns", "new brunswick": "nb",
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"prince edward island": "pe", "newfoundland": "nl", "yukon": "yt",
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"northwest territories": "nt", "nunavut": "nu",
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# US states
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"alabama": "al", "alaska": "ak", "arizona": "az", "arkansas": "ar",
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"california": "ca", "colorado": "co", "connecticut": "ct", "delaware": "de",
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"florida": "fl", "georgia": "ga", "hawaii": "hi", "idaho": "id",
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"illinois": "il", "indiana": "in", "iowa": "ia", "kansas": "ks",
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"kentucky": "ky", "louisiana": "la", "maine": "me", "maryland": "md",
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"massachusetts": "ma", "michigan": "mi", "minnesota": "mn", "mississippi": "ms",
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"missouri": "mo", "montana": "mt", "nebraska": "ne", "nevada": "nv",
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"new hampshire": "nh", "new jersey": "nj", "new mexico": "nm", "new york": "ny",
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"north carolina": "nc", "north dakota": "nd", "ohio": "oh", "oklahoma": "ok",
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"oregon": "or", "pennsylvania": "pa", "rhode island": "ri", "south carolina": "sc",
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| 336 |
+
"south dakota": "sd", "tennessee": "tn", "texas": "tx", "utah": "ut",
|
| 337 |
+
"vermont": "vt", "virginia": "va", "washington": "wa", "west virginia": "wv",
|
| 338 |
+
"wisconsin": "wi", "wyoming": "wy"
|
| 339 |
}
|
| 340 |
|
| 341 |
if geographic_scope.lower() in abbreviations:
|
| 342 |
scope_values.append(abbreviations[geographic_scope.lower()])
|
| 343 |
|
| 344 |
+
try:
|
| 345 |
+
scope_filter = df[geo_col].str.lower().isin(scope_values)
|
| 346 |
+
filters.append(scope_filter)
|
| 347 |
+
except Exception as e:
|
| 348 |
+
logger.warning(f"Error creating scope filter: {str(e)}")
|
| 349 |
|
| 350 |
+
# Add region filters - generic approach
|
| 351 |
if regions:
|
| 352 |
+
try:
|
| 353 |
+
region_filter = df[geo_col].str.lower().isin([r.lower() for r in regions])
|
| 354 |
+
filters.append(region_filter)
|
| 355 |
+
except Exception as e:
|
| 356 |
+
logger.warning(f"Error creating region filter: {str(e)}")
|
| 357 |
|
| 358 |
# Apply filters
|
| 359 |
if filters:
|
| 360 |
+
try:
|
| 361 |
+
combined_filter = filters[0]
|
| 362 |
+
for f in filters[1:]:
|
| 363 |
+
combined_filter = combined_filter | f
|
| 364 |
+
|
| 365 |
+
return df[combined_filter].copy()
|
| 366 |
+
except Exception as e:
|
| 367 |
+
logger.warning(f"Error applying filters: {str(e)}")
|
| 368 |
|
| 369 |
return df.copy()
|
| 370 |
|
| 371 |
def analyze_resource_allocation(self, relevant_data: List[str]) -> Dict[str, Any]:
|
| 372 |
+
"""Analyze resource allocation patterns - generic approach"""
|
| 373 |
results = {}
|
| 374 |
|
| 375 |
for data_name in relevant_data:
|
|
|
|
| 377 |
if df is None or df.empty:
|
| 378 |
continue
|
| 379 |
|
| 380 |
+
# Staff analysis - generic column finding
|
| 381 |
staff_col = self._find_column(df, ['staff', 'employees', 'fte'])
|
| 382 |
if staff_col:
|
| 383 |
# Ensure we're working with numeric data
|
|
|
|
| 394 |
avg_staff_per_bed = df['staff_per_bed'].mean()
|
| 395 |
results["staff_per_bed_ratio"] = avg_staff_per_bed
|
| 396 |
|
| 397 |
+
# Equipment analysis - generic approach
|
| 398 |
equipment_cols = [col for col in df.columns if 'equipment' in col.lower()]
|
| 399 |
if equipment_cols:
|
| 400 |
equipment_summary = {}
|
|
|
|
| 407 |
return results
|
| 408 |
|
| 409 |
def analyze_trends(self, relevant_data: List[str]) -> Dict[str, Any]:
|
| 410 |
+
"""Analyze trends in healthcare data - generic approach"""
|
| 411 |
results = {}
|
| 412 |
|
| 413 |
for data_name in relevant_data:
|
|
|
|
| 415 |
if df is None or df.empty:
|
| 416 |
continue
|
| 417 |
|
| 418 |
+
# Find time-based columns - generic approach
|
| 419 |
time_cols = [col for col in df.columns if any(year in col.lower() for year in ['2020', '2021', '2022', '2023', '2024'])]
|
| 420 |
|
| 421 |
if len(time_cols) >= 2:
|
|
|
|
| 445 |
return results
|
| 446 |
|
| 447 |
def generate_recommendations(self, analysis_results: Dict[str, Any], requirements: Dict[str, Any]) -> List[Dict[str, str]]:
|
| 448 |
+
"""Generate data-driven operational recommendations - generic approach"""
|
| 449 |
recommendations = []
|
| 450 |
geographic_scope = requirements.get("geographic_scope", "the region")
|
| 451 |
|
|
|
|
| 471 |
"data_source": "Capacity trend analysis"
|
| 472 |
})
|
| 473 |
|
| 474 |
+
# Zone-specific recommendations - generic approach
|
| 475 |
if "max_percentage_decrease" in capacity and isinstance(capacity["max_percentage_decrease"], dict):
|
| 476 |
+
# Try to find the zone name using multiple possible keys
|
| 477 |
+
zone_name = "a zone"
|
| 478 |
+
for key in ["zone", "Zone", "ZONE", "region", "Region", "REGION"]:
|
| 479 |
+
if key in capacity["max_percentage_decrease"]:
|
| 480 |
+
zone_name = capacity["max_percentage_decrease"][key]
|
| 481 |
+
break
|
| 482 |
+
|
| 483 |
decrease = capacity["max_percentage_decrease"].get("percent_change", 0)
|
| 484 |
|
| 485 |
+
if zone_name and decrease:
|
| 486 |
recommendations.append({
|
| 487 |
+
"title": f"Address Capacity Decline in {zone_name}",
|
| 488 |
+
"description": f"{zone_name} shows a {decrease:.1f}% decrease in bed capacity. Investigate causes and implement recovery strategies.",
|
| 489 |
"priority": "High",
|
| 490 |
"data_source": "Zone capacity analysis"
|
| 491 |
})
|
|
|
|
| 521 |
return recommendations
|
| 522 |
|
| 523 |
def identify_integration_opportunities(self, analysis_results: Dict[str, Any]) -> Dict[str, Any]:
|
| 524 |
+
"""Identify opportunities for AI integration and data enhancement - generic approach"""
|
| 525 |
opportunities = {
|
| 526 |
"data_integration": [],
|
| 527 |
"ai_applications": [],
|
|
|
|
| 571 |
|
| 572 |
# Helper methods
|
| 573 |
def _find_column(self, df, patterns):
|
| 574 |
+
"""Find the first column matching any pattern - generic approach"""
|
| 575 |
if df is None or df.empty:
|
| 576 |
return None
|
| 577 |
for col in df.columns:
|
|
|
|
| 580 |
return None
|
| 581 |
|
| 582 |
def _calculate_gini(self, values):
|
| 583 |
+
"""Calculate Gini coefficient for inequality measurement - generic approach"""
|
| 584 |
if not values or len(values) < 2:
|
| 585 |
return 0
|
| 586 |
|
|
|
|
| 596 |
return gini
|
| 597 |
|
| 598 |
def _calculate_diversity_index(self, distribution):
|
| 599 |
+
"""Calculate Shannon diversity index - generic approach"""
|
| 600 |
if not distribution:
|
| 601 |
return 0
|
| 602 |
|
|
|
|
| 611 |
return -sum(p * np.log(p) for p in proportions)
|
| 612 |
|
| 613 |
def _extract_geographic_scope(self, text):
|
| 614 |
+
"""Extract geographic scope from text - generic approach"""
|
| 615 |
+
# Look for province/state names - generic for any region
|
| 616 |
provinces = [
|
| 617 |
"alberta", "british columbia", "ontario", "quebec", "manitoba",
|
| 618 |
"saskatchewan", "nova scotia", "new brunswick", "prince edward island",
|
|
|
|
| 653 |
return "Unknown"
|
| 654 |
|
| 655 |
def _extract_time_period(self, text):
|
| 656 |
+
"""Extract time period from text - generic approach"""
|
| 657 |
# Look for year patterns
|
| 658 |
import re
|
| 659 |
years = re.findall(r'\b(20\d{2})\b', text)
|
|
|
|
| 662 |
return "Unknown"
|
| 663 |
|
| 664 |
def _extract_facility_types(self, text):
|
| 665 |
+
"""Extract facility types from text - generic approach"""
|
| 666 |
types = []
|
| 667 |
if "hospital" in text.lower():
|
| 668 |
types.append("Hospitals")
|
|
|
|
| 673 |
return types
|
| 674 |
|
| 675 |
def _extract_metrics(self, text):
|
| 676 |
+
"""Extract required metrics from text - generic approach"""
|
| 677 |
metrics = []
|
| 678 |
if "bed" in text.lower():
|
| 679 |
metrics.append("Bed capacity")
|
|
|
|
| 684 |
return metrics
|
| 685 |
|
| 686 |
def _identify_relevant_data(self, text):
|
| 687 |
+
"""Identify relevant datasets for the scenario - generic approach"""
|
| 688 |
# Use data registry's find_related_datasets method
|
| 689 |
keywords = ["facility", "bed", "capacity", "healthcare", "hospital"]
|
| 690 |
return [item["name"] for item in self.data_registry.find_related_datasets(keywords)]
|