Spaces:
Sleeping
Sleeping
File size: 5,723 Bytes
aff3c6f |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 |
"""
Copyright © 2025 Howard Hughes Medical Institute, Authored by Carsen Stringer , Michael Rariden and Marius Pachitariu.
"""
from qtpy.QtWidgets import QAction
from . import io
def mainmenu(parent):
main_menu = parent.menuBar()
file_menu = main_menu.addMenu("&File")
# load processed data
loadImg = QAction("&Load image (*.tif, *.png, *.jpg)", parent)
loadImg.setShortcut("Ctrl+L")
loadImg.triggered.connect(lambda: io._load_image(parent))
file_menu.addAction(loadImg)
parent.autoloadMasks = QAction("Autoload masks from _masks.tif file", parent,
checkable=True)
parent.autoloadMasks.setChecked(False)
file_menu.addAction(parent.autoloadMasks)
parent.disableAutosave = QAction("Disable autosave _seg.npy file", parent,
checkable=True)
parent.disableAutosave.setChecked(False)
file_menu.addAction(parent.disableAutosave)
parent.loadMasks = QAction("Load &masks (*.tif, *.png, *.jpg)", parent)
parent.loadMasks.setShortcut("Ctrl+M")
parent.loadMasks.triggered.connect(lambda: io._load_masks(parent))
file_menu.addAction(parent.loadMasks)
parent.loadMasks.setEnabled(False)
loadManual = QAction("Load &processed/labelled image (*_seg.npy)", parent)
loadManual.setShortcut("Ctrl+P")
loadManual.triggered.connect(lambda: io._load_seg(parent))
file_menu.addAction(loadManual)
parent.saveSet = QAction("&Save masks and image (as *_seg.npy)", parent)
parent.saveSet.setShortcut("Ctrl+S")
parent.saveSet.triggered.connect(lambda: io._save_sets(parent))
file_menu.addAction(parent.saveSet)
parent.saveSet.setEnabled(False)
parent.savePNG = QAction("Save masks as P&NG/tif", parent)
parent.savePNG.setShortcut("Ctrl+N")
parent.savePNG.triggered.connect(lambda: io._save_png(parent))
file_menu.addAction(parent.savePNG)
parent.savePNG.setEnabled(False)
parent.saveOutlines = QAction("Save &Outlines as text for imageJ", parent)
parent.saveOutlines.setShortcut("Ctrl+O")
parent.saveOutlines.triggered.connect(lambda: io._save_outlines(parent))
file_menu.addAction(parent.saveOutlines)
parent.saveOutlines.setEnabled(False)
parent.saveROIs = QAction("Save outlines as .zip archive of &ROI files for ImageJ",
parent)
parent.saveROIs.setShortcut("Ctrl+R")
parent.saveROIs.triggered.connect(lambda: io._save_rois(parent))
file_menu.addAction(parent.saveROIs)
parent.saveROIs.setEnabled(False)
parent.saveFlows = QAction("Save &Flows and cellprob as tif", parent)
parent.saveFlows.setShortcut("Ctrl+F")
parent.saveFlows.triggered.connect(lambda: io._save_flows(parent))
file_menu.addAction(parent.saveFlows)
parent.saveFlows.setEnabled(False)
def editmenu(parent):
main_menu = parent.menuBar()
edit_menu = main_menu.addMenu("&Edit")
parent.undo = QAction("Undo previous mask/trace", parent)
parent.undo.setShortcut("Ctrl+Z")
parent.undo.triggered.connect(parent.undo_action)
parent.undo.setEnabled(False)
edit_menu.addAction(parent.undo)
parent.redo = QAction("Undo remove mask", parent)
parent.redo.setShortcut("Ctrl+Y")
parent.redo.triggered.connect(parent.undo_remove_action)
parent.redo.setEnabled(False)
edit_menu.addAction(parent.redo)
parent.ClearButton = QAction("Clear all masks", parent)
parent.ClearButton.setShortcut("Ctrl+0")
parent.ClearButton.triggered.connect(parent.clear_all)
parent.ClearButton.setEnabled(False)
edit_menu.addAction(parent.ClearButton)
parent.remcell = QAction("Remove selected cell (Ctrl+CLICK)", parent)
parent.remcell.setShortcut("Ctrl+Click")
parent.remcell.triggered.connect(parent.remove_action)
parent.remcell.setEnabled(False)
edit_menu.addAction(parent.remcell)
parent.mergecell = QAction("FYI: Merge cells by Alt+Click", parent)
parent.mergecell.setEnabled(False)
edit_menu.addAction(parent.mergecell)
def modelmenu(parent):
main_menu = parent.menuBar()
io._init_model_list(parent)
model_menu = main_menu.addMenu("&Models")
parent.addmodel = QAction("Add custom torch model to GUI", parent)
#parent.addmodel.setShortcut("Ctrl+A")
parent.addmodel.triggered.connect(parent.add_model)
parent.addmodel.setEnabled(True)
model_menu.addAction(parent.addmodel)
parent.removemodel = QAction("Remove selected custom model from GUI", parent)
#parent.removemodel.setShortcut("Ctrl+R")
parent.removemodel.triggered.connect(parent.remove_model)
parent.removemodel.setEnabled(True)
model_menu.addAction(parent.removemodel)
parent.newmodel = QAction("&Train new model with image+masks in folder", parent)
parent.newmodel.setShortcut("Ctrl+T")
parent.newmodel.triggered.connect(parent.new_model)
parent.newmodel.setEnabled(False)
model_menu.addAction(parent.newmodel)
openTrainHelp = QAction("Training instructions", parent)
openTrainHelp.triggered.connect(parent.train_help_window)
model_menu.addAction(openTrainHelp)
def helpmenu(parent):
main_menu = parent.menuBar()
help_menu = main_menu.addMenu("&Help")
openHelp = QAction("&Help with GUI", parent)
openHelp.setShortcut("Ctrl+H")
openHelp.triggered.connect(parent.help_window)
help_menu.addAction(openHelp)
openGUI = QAction("&GUI layout", parent)
openGUI.setShortcut("Ctrl+G")
openGUI.triggered.connect(parent.gui_window)
help_menu.addAction(openGUI)
openTrainHelp = QAction("Training instructions", parent)
openTrainHelp.triggered.connect(parent.train_help_window)
help_menu.addAction(openTrainHelp)
|