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Browse files- .gitattributes +1 -0
- Dockerfile +20 -0
- app_gradio.py +82 -0
- models/efficientnetb0_best/savedmodel/fingerprint.pb +3 -0
- models/efficientnetb0_best/savedmodel/saved_model.pb +3 -0
- models/efficientnetb0_best/savedmodel/variables/variables.data-00000-of-00001 +3 -0
- models/efficientnetb0_best/savedmodel/variables/variables.index +0 -0
- requirements.txt +8 -0
.gitattributes
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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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models/efficientnetb0_best/savedmodel/variables/variables.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
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Dockerfile
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FROM python:3.10-slim
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RUN apt-get update && apt-get install -y --no-install-recommends \
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libjpeg62-turbo \
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&& rm -rf /var/lib/apt/lists/*
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WORKDIR /app
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COPY requirements.txt /app/requirements.txt
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RUN pip install --no-cache-dir -r requirements.txt
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COPY app_gradio.py /app/app_gradio.py
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COPY models /app/models
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EXPOSE 7860
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ENV TF_CPP_MIN_LOG_LEVEL=2
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ENV TF_FORCE_GPU_ALLOW_GROWTH=true
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CMD ["python", "app_gradio.py"]
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app_gradio.py
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import io, numpy as np, tensorflow as tf
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from PIL import Image, UnidentifiedImageError
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import gradio as gr
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SAVEDMODEL_DIR = "/content/drive/MyDrive/Pneumonia_Detection/models/efficientnetb0_best/savedmodel"
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INPUT_SIZE = (224, 224)
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THRESHOLD = 0.61
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loaded = tf.saved_model.load(SAVEDMODEL_DIR)
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infer = loaded.signatures["serving_default"]
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def _read_dicom_bytes(b: bytes):
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import pydicom
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dcm = pydicom.dcmread(io.BytesIO(b), force=True)
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arr = dcm.pixel_array.astype("float32")
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photometric = str(getattr(dcm, "PhotometricInterpretation", "")).upper()
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if "MONOCHROME1" in photometric:
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arr = arr.max() - arr
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if arr.max() > 0:
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arr = arr / arr.max()
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if arr.ndim == 2:
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arr = np.stack([arr]*3, axis=-1)
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elif arr.ndim == 3 and arr.shape[-1] == 1:
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arr = np.concatenate([arr]*3, axis=-1)
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return arr
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def _read_image_bytes(b: bytes):
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img = Image.open(io.BytesIO(b)).convert("RGB")
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return (np.asarray(img).astype("float32") / 255.0)
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def _prep_01_rgb(arr):
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x = tf.image.resize(arr, INPUT_SIZE).numpy().astype("float32")
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x = np.clip(x, 0.0, 1.0)
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xb = np.expand_dims(x, 0)
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return tf.constant(xb), x
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def _get_prob(out_dict):
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t = next(iter(out_dict.values()))
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v = t.numpy()
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return float(v.reshape(-1)[0]) if v.shape[-1] == 1 else float(v[0, 1])
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def predict(file):
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if file is None:
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return None, {"NORMAL": 0.0, "PNEUMONIA": 0.0}, "No file uploaded."
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raw = file.read()
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name = getattr(file, "name", "upload")
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try:
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if name.lower().endswith((".dcm", ".dicom")):
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arr = _read_dicom_bytes(raw)
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else:
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arr = _read_image_bytes(raw)
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except Exception:
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try:
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arr = _read_image_bytes(raw)
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except Exception:
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try:
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arr = _read_dicom_bytes(raw)
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except Exception as e:
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return None, {"NORMAL": 0.0, "PNEUMONIA": 0.0}, f"Unreadable file: {e}"
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xb, x_disp = _prep_01_rgb(arr)
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out = infer(xb)
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prob = _get_prob(out)
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decision = "PNEUMONIA" if prob >= THRESHOLD else "NORMAL"
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return x_disp, {"NORMAL": 1 - prob, "PNEUMONIA": prob}, f"Decision @ {THRESHOLD:.2f}: {decision} (p={prob:.3f})"
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with gr.Blocks(title="Pneumonia Detector – EfficientNetB0") as demo:
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gr.Markdown("# Pneumonia Detector – EfficientNetB0")
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gr.Markdown(
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"Upload **PNG/JPG** or **DICOM**. Input is resized to **224×224 RGB [0,1]**; "
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"the SavedModel contains its own preprocessing. Threshold **0.61**."
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)
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inp = gr.File(label="Upload chest X-ray (.png, .jpg, .dcm)")
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with gr.Row():
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out_img = gr.Image(label="Model Input (224×224)")
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out_lbl = gr.Label(label="Probabilities")
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out_txt = gr.Textbox(label="Decision")
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btn = gr.Button("Predict")
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btn.click(fn=predict, inputs=[inp], outputs=[out_img, out_lbl, out_txt])
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if __name__ == "__main__":
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demo.launch(Share=True)
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models/efficientnetb0_best/savedmodel/fingerprint.pb
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version https://git-lfs.github.com/spec/v1
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oid sha256:9d92ad8dce5965ff747819adabd1ec0439864e20bf0c5e2491134d66c27a63b5
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size 81
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models/efficientnetb0_best/savedmodel/saved_model.pb
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version https://git-lfs.github.com/spec/v1
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oid sha256:89e8e3eaf661c9ab0d606b82045c8c74baa32d6e12d654164f37d92bdb36524c
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size 2084046
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models/efficientnetb0_best/savedmodel/variables/variables.data-00000-of-00001
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version https://git-lfs.github.com/spec/v1
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oid sha256:5b635b2fb60d6c7214b32d3278a7854825badb441a014f923fdb0de1a9d9dba0
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size 192971525
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models/efficientnetb0_best/savedmodel/variables/variables.index
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Binary file (36.5 kB). View file
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requirements.txt
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gradio>=4.0.0
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pillow
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numpy
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tensorflow-cpu==2.15.0
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pydicom
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pylibjpeg
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pylibjpeg-libjpeg
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pylibjpeg-openjpeg
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