BioGraph-AI / Dockerfile
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FROM python:3.10-slim
# Create user with UID 1000 for Hugging Face Spaces non-root security
RUN useradd -m -u 1000 user
WORKDIR /app
# Install system dependencies (OpenMP libgomp1 for PyTorch / RDKit)
RUN apt-get update && apt-get install -y --no-install-recommends \
build-essential \
curl \
libgomp1 \
&& rm -rf /var/lib/apt/lists/*
# Install Python dependencies
COPY requirements.txt .
RUN pip install --no-cache-dir --upgrade pip && \
pip install --no-cache-dir -r requirements.txt
# Copy application code, configs, raw data, and checkpoints
COPY configs/ ./configs/
COPY data/raw/ ./data/raw/
COPY results/checkpoints/ ./results/checkpoints/
COPY src/ ./src/
COPY app/ ./app/
COPY frontend/dist/ ./frontend/dist/
RUN chown -R user:user /app
USER user
ENV PORT=8000 \
LOW_MEMORY_MODE=1 \
PYTHONUNBUFFERED=1
EXPOSE 8000
HEALTHCHECK --interval=30s --timeout=5s --start-period=15s --retries=3 \
CMD curl -f http://localhost:8000/api/health || exit 1
CMD ["sh", "-c", "uvicorn app.server:app --host 0.0.0.0 --port ${PORT:-8000}"]