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Update app.py
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app.py
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@@ -2,88 +2,75 @@ import gradio as gr
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from PIL import Image
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import torch
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from torchvision import models, transforms
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import PyPDF2
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model
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model.eval() # Set the model to evaluation mode
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# Define image preprocessing function
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def preprocess_image(image):
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transform = transforms.Compose([
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transforms.Resize((224, 224)),
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transforms.ToTensor(),
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])
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return transform(image).unsqueeze(0)
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# Define a prediction function for X-ray images with detailed output
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def predict_xray(image):
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image_tensor = preprocess_image(image)
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with torch.no_grad():
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outputs = model(image_tensor)
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probs = torch.nn.functional.softmax(outputs[0], dim=0)
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# Define the conditions (replace these with the actual conditions your model predicts)
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conditions = ["Normal", "Pneumonia", "Cancer", "TB", "Other"]
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results = {conditions[i]: float(probs[i]) for i in range(len(conditions))}
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# Identify the most likely condition and calculate the confidence
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most_likely_condition = max(results, key=results.get)
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confidence = results[most_likely_condition] * 100
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# Provide a more detailed summary of the results
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summary = f"**Summary**: Based on the X-ray analysis, the most likely diagnosis is: <b>{most_likely_condition}</b> with a confidence of <b>{confidence:.2f}%</b>."
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# Additional detailed descriptions and recommendations for each condition
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condition_details = {
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"Normal": {
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"description": "The X-ray shows no abnormal signs, and the lungs appear healthy.",
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"recommendation": "No further tests are required. Continue with regular health check-ups."
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},
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"Pneumonia": {
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"description": "Pneumonia is an infection that causes inflammation in the lungs.
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"recommendation": "Consult a healthcare provider
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},
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"Cancer": {
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"description": "Lung cancer
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"recommendation": "Consult an oncologist for further
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},
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"TB": {
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"description": "Tuberculosis
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"recommendation": "Seek immediate medical attention for
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},
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"Other": {
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"description": "
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"recommendation": "Consult
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}
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}
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# Displaying the results in a structured way (bullet points)
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detailed_results = "<ul>"
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for condition, prob in results.items():
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detailed_results += f"<li><b>{condition}:</b> {prob*100:.2f}%</li>"
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detailed_results += "</ul>"
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return summary, detailed_results, additional_feedback
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# Define a function to read and analyze patient reports (PDFs)
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def analyze_report(file):
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text = ""
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if file.name.endswith(".pdf"):
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pdf_reader = PyPDF2.PdfReader(file)
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for page in pdf_reader.pages:
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text += page.extract_text()
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# For simplicity, we are just summarizing the first 300 characters
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report_summary = f"Patient Report (Preview): {text[:300]}..."
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return report_summary
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# Gradio Interface with enhanced UI
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def create_interface():
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with gr.Blocks() as demo:
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# Custom CSS for UI
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custom_css = """
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.gradio-container {
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background-color: #f4f6f9;
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@@ -110,42 +97,38 @@ def create_interface():
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box-shadow: 0 4px 8px rgba(0, 0, 0, 0.1);
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margin-top: 20px;
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}
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.result-list {
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padding-left: 20px;
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}
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.result-summary {
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font-size: 18px;
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color: #2F4F4F;
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}
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"""
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# Title section
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gr.Markdown("<h1 class='title'>RadiologyScan AI</h1>")
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with gr.Row():
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xray_input = gr.Image(label="Upload Chest X-ray", type="pil")
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report_input = gr.File(label="Upload Patient Report (PDF)", file_count="single")
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# Buttons for analysis
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with gr.Row():
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predict_button = gr.Button("Analyze X-ray", elem_classes="gradio-button")
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report_button = gr.Button("Analyze Report", elem_classes="gradio-button")
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xray_result = gr.HTML(label="Detailed X-ray Results", elem_classes="result-box") # Removed interactive=False
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additional_feedback = gr.Textbox(label="Additional Feedback", interactive=False, elem_classes="result-box")
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# Results section for the patient report
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report_output = gr.Textbox(label="Report Summary", interactive=False, elem_classes="result-box")
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# Event handlers for buttons
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predict_button.click(predict_xray, inputs=xray_input, outputs=[xray_output, xray_result, additional_feedback])
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report_button.click(analyze_report, inputs=report_input, outputs=report_output)
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return demo
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# Launch the Gradio interface
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demo = create_interface()
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demo.launch(share=True)
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from PIL import Image
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import torch
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from torchvision import models, transforms
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import PyPDF2
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model = models.densenet121(pretrained=True)
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model.eval()
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def preprocess_image(image):
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transform = transforms.Compose([
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transforms.Resize((224, 224)),
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transforms.ToTensor(),
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])
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return transform(image).unsqueeze(0)
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def predict_xray(image):
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image_tensor = preprocess_image(image)
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with torch.no_grad():
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outputs = model(image_tensor)
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probs = torch.nn.functional.softmax(outputs[0], dim=0)
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conditions = ["Normal", "Pneumonia", "Cancer", "TB", "Other"]
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results = {conditions[i]: float(probs[i]) for i in range(len(conditions))}
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most_likely_condition = max(results, key=results.get)
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confidence = results[most_likely_condition] * 100
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summary = f"**Summary**: Based on the X-ray analysis, the most likely diagnosis is: <b>{most_likely_condition}</b> with a confidence of <b>{confidence:.2f}%</b>."
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condition_details = {
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"Normal": {
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"description": "The X-ray shows no abnormal signs, and the lungs appear healthy.",
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"recommendation": "No further tests are required. Continue with regular health check-ups."
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},
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"Pneumonia": {
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"description": "Pneumonia is an infection that causes inflammation in the lungs.",
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"recommendation": "Consult a healthcare provider for treatment."
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},
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"Cancer": {
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"description": "Lung cancer may appear as abnormal growths in the lungs.",
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"recommendation": "Consult an oncologist for further diagnostic procedures."
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},
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"TB": {
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"description": "Tuberculosis is a bacterial infection that affects the lungs.",
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"recommendation": "Seek immediate medical attention for treatment."
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},
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"Other": {
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"description": "There may be other conditions requiring investigation.",
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"recommendation": "Consult a radiologist for further analysis."
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}
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}
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detailed_results = "<ul>"
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for condition, prob in results.items():
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detailed_results += f"<li><b>{condition}:</b> {prob*100:.2f}%</li>"
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detailed_results += "</ul>"
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additional_feedback = condition_details.get(most_likely_condition, "Consult a doctor for more details.")
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return summary, detailed_results, additional_feedback
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def analyze_report(file):
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text = ""
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if file.name.endswith(".pdf"):
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pdf_reader = PyPDF2.PdfReader(file)
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for page in pdf_reader.pages:
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text += page.extract_text()
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report_summary = f"Patient Report (Preview): {text[:300]}..."
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return report_summary
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def create_interface():
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with gr.Blocks() as demo:
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custom_css = """
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.gradio-container {
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background-color: #f4f6f9;
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box-shadow: 0 4px 8px rgba(0, 0, 0, 0.1);
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margin-top: 20px;
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}
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"""
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gr.Markdown("<h1 class='title'>RadiologyScan AI</h1>")
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gr.Markdown("""
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<h3>🩻 Radiology Areas Covered:</h3>
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<table style='width:100%; border: 1px solid #ccc;'>
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<tr><th>Area</th><th>Common Tools</th><th>Focused Problems</th></tr>
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<tr><td>Lungs</td><td>X-ray, CT</td><td>Pneumonia, TB, Lung cancer</td></tr>
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<tr><td>Brain</td><td>MRI, CT</td><td>Stroke, Tumors</td></tr>
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<tr><td>Bones/Joints</td><td>X-ray, CT, MRI</td><td>Fractures, Arthritis</td></tr>
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<tr><td>Abdomen/Pelvis</td><td>Ultrasound, CT</td><td>Liver/kidney issues, tumors, appendicitis</td></tr>
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<tr><td>Cancer Anywhere</td><td>MRI, CT, PET</td><td>Tumors, cancer spread, biopsy guidance</td></tr>
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</table>
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""")
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with gr.Row():
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xray_input = gr.Image(label="Upload Chest X-ray", type="pil")
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report_input = gr.File(label="Upload Patient Report (PDF)", file_count="single")
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with gr.Row():
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predict_button = gr.Button("Analyze X-ray", elem_classes="gradio-button")
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report_button = gr.Button("Analyze Report", elem_classes="gradio-button")
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xray_output = gr.HTML(label="X-ray Diagnosis Summary", elem_classes="result-box")
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xray_result = gr.HTML(label="Detailed X-ray Results", elem_classes="result-box")
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additional_feedback = gr.Textbox(label="Additional Feedback", interactive=False, elem_classes="result-box")
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report_output = gr.Textbox(label="Report Summary", interactive=False, elem_classes="result-box")
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predict_button.click(predict_xray, inputs=xray_input, outputs=[xray_output, xray_result, additional_feedback])
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report_button.click(analyze_report, inputs=report_input, outputs=report_output)
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return demo
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demo = create_interface()
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demo.launch(share=True)
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