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docs: Mark SPEC-14 ClinicalTrials Outcomes as implemented

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SPEC-14 was already fully implemented in the codebase:
- OutcomesModule and HasResults fields in FIELDS constant
- _extract_primary_outcome() method
- Results availability and date extraction
- Relevance boosting for trials with results (0.90 vs 0.85)
- 4 unit tests + 2 integration tests

Updated META_PLAN.md to reflect both specs complete.

Files changed (1) hide show
  1. META_PLAN.md +15 -14
META_PLAN.md CHANGED
@@ -14,9 +14,9 @@
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  - No linting issues (ruff clean)
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  - 1 open bug (P3 - low-priority UX)
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- **Key Finding**: Architecture is sound. Two high-impact specs are written but not implemented. Documentation is sprawling but mostly accurate.
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- **Recommendation**: Implement the two pending specs, clean up tech debt, then organize docs.
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  ---
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@@ -28,7 +28,7 @@
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  |----------|--------|--------|
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  | `docs/STATUS_LLAMAINDEX_INTEGRATION.md` | DONE | Keep as-is |
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  | `docs/specs/SPEC_13_EVIDENCE_DEDUPLICATION.md` | βœ… IMPLEMENTED | Verify in production |
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- | `docs/specs/SPEC_14_CLINICALTRIALS_OUTCOMES.md` | SPEC DONE, CODE NOT | **Implement** |
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  | `docs/future-roadmap/TOOL_ANALYSIS_CRITICAL.md` | ANALYSIS DONE | Reference for future |
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  | `docs/ARCHITECTURE.md` | PARTIAL | Expand with diagrams |
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  | `docs/architecture/system_registry.md` | DONE | Canonical SSOT for wiring |
@@ -39,7 +39,7 @@
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  |-----------|--------|-------|
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  | `src/orchestrators/` | COMPLETE | Factory pattern, protocols |
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  | `src/clients/` | COMPLETE | OpenAI/HuggingFace working, Anthropic partial (tech debt) |
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- | `src/tools/` | FUNCTIONAL | Deduplication done, missing outcomes extraction |
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  | `src/agents/` | FUNCTIONAL | All agents wired, some experimental |
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  | `src/services/` | COMPLETE | Embeddings, RAG, memory all working |
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@@ -48,7 +48,7 @@
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  | Issue | Priority | Effort |
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  |-------|----------|--------|
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  | ~~Evidence deduplication (SPEC_13)~~ | ~~HIGH~~ | βœ… DONE |
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- | ClinicalTrials outcomes (SPEC_14) | HIGH | 2-3 hours |
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  | Remove Anthropic wiring (P3) | P3 | 1 hour |
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  | Expand ARCHITECTURE.md | MEDIUM | 2 hours |
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  | P3 Progress Bar positioning | P3 | 30 min |
@@ -72,16 +72,16 @@
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  ---
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- ### Step 2: Implement SPEC_14 - ClinicalTrials Outcomes
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- **Priority**: HIGH | **Effort**: 2-3 hours | **Impact**: Critical efficacy data
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- Currently, we don't extract outcome measures or results status from trials.
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- **Files to modify**:
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- - `src/tools/clinicaltrials.py` - Add OutcomesModule, HasResults fields
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- - `tests/unit/tools/test_clinicaltrials.py` - Add outcome tests
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- **Spec**: `docs/specs/SPEC_14_CLINICALTRIALS_OUTCOMES.md`
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  ---
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@@ -153,7 +153,7 @@ docs/
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  └── index.md # Entry point
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  ```
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- **Recommendation**: Structure is fine. SPEC_13 is done; SPEC_14 remains to be implemented.
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  ---
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@@ -162,7 +162,7 @@ docs/
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  After completing Steps 1-5:
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  - [x] Evidence deduplication reduces duplicate papers by 80%+ βœ…
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- - [ ] ClinicalTrials shows outcome measures and results status
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  - [ ] No Anthropic references in codebase
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  - [ ] ARCHITECTURE.md has flow diagrams
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  - [ ] All 14 implementation phases marked DONE/TODO
@@ -177,6 +177,7 @@ After completing Steps 1-5:
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  | 2025-12-03 | Remove Anthropic over adding Gemini | Tech debt cleanup > new features |
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  | 2025-12-03 | Defer full-text retrieval | Stabilize core first |
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  | 2025-12-03 | Mark SPEC_13 complete | All acceptance criteria verified, PR #122 |
 
180
 
181
  ---
182
 
 
14
  - No linting issues (ruff clean)
15
  - 1 open bug (P3 - low-priority UX)
16
 
17
+ **Key Finding**: Architecture is sound. Both high-impact specs (SPEC-13, SPEC-14) are now implemented. Documentation is sprawling but mostly accurate.
18
 
19
+ **Recommendation**: Clean up tech debt (Anthropic wiring), then organize docs.
20
 
21
  ---
22
 
 
28
  |----------|--------|--------|
29
  | `docs/STATUS_LLAMAINDEX_INTEGRATION.md` | DONE | Keep as-is |
30
  | `docs/specs/SPEC_13_EVIDENCE_DEDUPLICATION.md` | βœ… IMPLEMENTED | Verify in production |
31
+ | `docs/specs/SPEC_14_CLINICALTRIALS_OUTCOMES.md` | βœ… IMPLEMENTED | Verify in production |
32
  | `docs/future-roadmap/TOOL_ANALYSIS_CRITICAL.md` | ANALYSIS DONE | Reference for future |
33
  | `docs/ARCHITECTURE.md` | PARTIAL | Expand with diagrams |
34
  | `docs/architecture/system_registry.md` | DONE | Canonical SSOT for wiring |
 
39
  |-----------|--------|-------|
40
  | `src/orchestrators/` | COMPLETE | Factory pattern, protocols |
41
  | `src/clients/` | COMPLETE | OpenAI/HuggingFace working, Anthropic partial (tech debt) |
42
+ | `src/tools/` | COMPLETE | Deduplication + outcomes extraction done |
43
  | `src/agents/` | FUNCTIONAL | All agents wired, some experimental |
44
  | `src/services/` | COMPLETE | Embeddings, RAG, memory all working |
45
 
 
48
  | Issue | Priority | Effort |
49
  |-------|----------|--------|
50
  | ~~Evidence deduplication (SPEC_13)~~ | ~~HIGH~~ | βœ… DONE |
51
+ | ~~ClinicalTrials outcomes (SPEC_14)~~ | ~~HIGH~~ | βœ… DONE |
52
  | Remove Anthropic wiring (P3) | P3 | 1 hour |
53
  | Expand ARCHITECTURE.md | MEDIUM | 2 hours |
54
  | P3 Progress Bar positioning | P3 | 30 min |
 
72
 
73
  ---
74
 
75
+ ### ~~Step 2: Implement SPEC_14 - ClinicalTrials Outcomes~~ βœ… COMPLETE
76
+ **Priority**: ~~HIGH~~ DONE | **Effort**: ~~2-3 hours~~ | **Impact**: Critical efficacy data
77
 
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+ βœ… **COMPLETED** - ClinicalTrials now extracts outcome measures and results status.
79
 
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+ **Files modified**:
81
+ - `src/tools/clinicaltrials.py` - Added `OutcomesModule`, `HasResults` fields, `_extract_primary_outcome()`
82
+ - `tests/unit/tools/test_clinicaltrials.py` - 4 outcome tests + 2 integration tests
83
 
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+ **Spec**: `docs/specs/SPEC_14_CLINICALTRIALS_OUTCOMES.md` (Status: Implemented)
85
 
86
  ---
87
 
 
153
  └── index.md # Entry point
154
  ```
155
 
156
+ **Recommendation**: Structure is fine. Both SPEC_13 and SPEC_14 are now implemented.
157
 
158
  ---
159
 
 
162
  After completing Steps 1-5:
163
 
164
  - [x] Evidence deduplication reduces duplicate papers by 80%+ βœ…
165
+ - [x] ClinicalTrials shows outcome measures and results status βœ…
166
  - [ ] No Anthropic references in codebase
167
  - [ ] ARCHITECTURE.md has flow diagrams
168
  - [ ] All 14 implementation phases marked DONE/TODO
 
177
  | 2025-12-03 | Remove Anthropic over adding Gemini | Tech debt cleanup > new features |
178
  | 2025-12-03 | Defer full-text retrieval | Stabilize core first |
179
  | 2025-12-03 | Mark SPEC_13 complete | All acceptance criteria verified, PR #122 |
180
+ | 2025-12-03 | Mark SPEC_14 complete | All acceptance criteria verified (was already implemented) |
181
 
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  ---
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