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docs: Mark SPEC-14 ClinicalTrials Outcomes as implemented
Browse filesSPEC-14 was already fully implemented in the codebase:
- OutcomesModule and HasResults fields in FIELDS constant
- _extract_primary_outcome() method
- Results availability and date extraction
- Relevance boosting for trials with results (0.90 vs 0.85)
- 4 unit tests + 2 integration tests
Updated META_PLAN.md to reflect both specs complete.
- META_PLAN.md +15 -14
META_PLAN.md
CHANGED
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@@ -14,9 +14,9 @@
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- No linting issues (ruff clean)
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- 1 open bug (P3 - low-priority UX)
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**Key Finding**: Architecture is sound.
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**Recommendation**:
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---
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@@ -28,7 +28,7 @@
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|----------|--------|--------|
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| `docs/STATUS_LLAMAINDEX_INTEGRATION.md` | DONE | Keep as-is |
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| `docs/specs/SPEC_13_EVIDENCE_DEDUPLICATION.md` | β
IMPLEMENTED | Verify in production |
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| `docs/specs/SPEC_14_CLINICALTRIALS_OUTCOMES.md` |
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| `docs/future-roadmap/TOOL_ANALYSIS_CRITICAL.md` | ANALYSIS DONE | Reference for future |
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| `docs/ARCHITECTURE.md` | PARTIAL | Expand with diagrams |
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| `docs/architecture/system_registry.md` | DONE | Canonical SSOT for wiring |
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@@ -39,7 +39,7 @@
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|-----------|--------|-------|
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| `src/orchestrators/` | COMPLETE | Factory pattern, protocols |
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| `src/clients/` | COMPLETE | OpenAI/HuggingFace working, Anthropic partial (tech debt) |
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| `src/tools/` |
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| `src/agents/` | FUNCTIONAL | All agents wired, some experimental |
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| `src/services/` | COMPLETE | Embeddings, RAG, memory all working |
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| Issue | Priority | Effort |
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|-------|----------|--------|
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| ~~Evidence deduplication (SPEC_13)~~ | ~~HIGH~~ | β
DONE |
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| ClinicalTrials outcomes (SPEC_14) | HIGH |
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| Remove Anthropic wiring (P3) | P3 | 1 hour |
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| Expand ARCHITECTURE.md | MEDIUM | 2 hours |
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| P3 Progress Bar positioning | P3 | 30 min |
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@@ -72,16 +72,16 @@
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---
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### Step 2: Implement SPEC_14 - ClinicalTrials Outcomes
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**Priority**: HIGH | **Effort**: 2-3 hours | **Impact**: Critical efficacy data
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**Files
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- `src/tools/clinicaltrials.py` -
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- `tests/unit/tools/test_clinicaltrials.py` -
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**Spec**: `docs/specs/SPEC_14_CLINICALTRIALS_OUTCOMES.md`
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---
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@@ -153,7 +153,7 @@ docs/
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βββ index.md # Entry point
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```
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**Recommendation**: Structure is fine. SPEC_13
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---
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@@ -162,7 +162,7 @@ docs/
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After completing Steps 1-5:
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- [x] Evidence deduplication reduces duplicate papers by 80%+ β
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-
- [
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- [ ] No Anthropic references in codebase
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- [ ] ARCHITECTURE.md has flow diagrams
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- [ ] All 14 implementation phases marked DONE/TODO
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@@ -177,6 +177,7 @@ After completing Steps 1-5:
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| 2025-12-03 | Remove Anthropic over adding Gemini | Tech debt cleanup > new features |
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| 2025-12-03 | Defer full-text retrieval | Stabilize core first |
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| 2025-12-03 | Mark SPEC_13 complete | All acceptance criteria verified, PR #122 |
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---
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- No linting issues (ruff clean)
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- 1 open bug (P3 - low-priority UX)
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+
**Key Finding**: Architecture is sound. Both high-impact specs (SPEC-13, SPEC-14) are now implemented. Documentation is sprawling but mostly accurate.
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**Recommendation**: Clean up tech debt (Anthropic wiring), then organize docs.
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---
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|----------|--------|--------|
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| 29 |
| `docs/STATUS_LLAMAINDEX_INTEGRATION.md` | DONE | Keep as-is |
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| 30 |
| `docs/specs/SPEC_13_EVIDENCE_DEDUPLICATION.md` | β
IMPLEMENTED | Verify in production |
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| 31 |
+
| `docs/specs/SPEC_14_CLINICALTRIALS_OUTCOMES.md` | β
IMPLEMENTED | Verify in production |
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| `docs/future-roadmap/TOOL_ANALYSIS_CRITICAL.md` | ANALYSIS DONE | Reference for future |
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| 33 |
| `docs/ARCHITECTURE.md` | PARTIAL | Expand with diagrams |
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| 34 |
| `docs/architecture/system_registry.md` | DONE | Canonical SSOT for wiring |
|
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| 39 |
|-----------|--------|-------|
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| 40 |
| `src/orchestrators/` | COMPLETE | Factory pattern, protocols |
|
| 41 |
| `src/clients/` | COMPLETE | OpenAI/HuggingFace working, Anthropic partial (tech debt) |
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| 42 |
+
| `src/tools/` | COMPLETE | Deduplication + outcomes extraction done |
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| 43 |
| `src/agents/` | FUNCTIONAL | All agents wired, some experimental |
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| 44 |
| `src/services/` | COMPLETE | Embeddings, RAG, memory all working |
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| Issue | Priority | Effort |
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|-------|----------|--------|
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| 50 |
| ~~Evidence deduplication (SPEC_13)~~ | ~~HIGH~~ | β
DONE |
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| 51 |
+
| ~~ClinicalTrials outcomes (SPEC_14)~~ | ~~HIGH~~ | β
DONE |
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| 52 |
| Remove Anthropic wiring (P3) | P3 | 1 hour |
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| 53 |
| Expand ARCHITECTURE.md | MEDIUM | 2 hours |
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| 54 |
| P3 Progress Bar positioning | P3 | 30 min |
|
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---
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+
### ~~Step 2: Implement SPEC_14 - ClinicalTrials Outcomes~~ β
COMPLETE
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+
**Priority**: ~~HIGH~~ DONE | **Effort**: ~~2-3 hours~~ | **Impact**: Critical efficacy data
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β
**COMPLETED** - ClinicalTrials now extracts outcome measures and results status.
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**Files modified**:
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- `src/tools/clinicaltrials.py` - Added `OutcomesModule`, `HasResults` fields, `_extract_primary_outcome()`
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+
- `tests/unit/tools/test_clinicaltrials.py` - 4 outcome tests + 2 integration tests
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**Spec**: `docs/specs/SPEC_14_CLINICALTRIALS_OUTCOMES.md` (Status: Implemented)
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---
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βββ index.md # Entry point
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```
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| 156 |
+
**Recommendation**: Structure is fine. Both SPEC_13 and SPEC_14 are now implemented.
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| 157 |
|
| 158 |
---
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| 159 |
|
|
|
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| 162 |
After completing Steps 1-5:
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| 163 |
|
| 164 |
- [x] Evidence deduplication reduces duplicate papers by 80%+ β
|
| 165 |
+
- [x] ClinicalTrials shows outcome measures and results status β
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| 166 |
- [ ] No Anthropic references in codebase
|
| 167 |
- [ ] ARCHITECTURE.md has flow diagrams
|
| 168 |
- [ ] All 14 implementation phases marked DONE/TODO
|
|
|
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| 177 |
| 2025-12-03 | Remove Anthropic over adding Gemini | Tech debt cleanup > new features |
|
| 178 |
| 2025-12-03 | Defer full-text retrieval | Stabilize core first |
|
| 179 |
| 2025-12-03 | Mark SPEC_13 complete | All acceptance criteria verified, PR #122 |
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| 180 |
+
| 2025-12-03 | Mark SPEC_14 complete | All acceptance criteria verified (was already implemented) |
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| 181 |
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---
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|