Spaces:
Sleeping
Sleeping
File size: 8,768 Bytes
906e104 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 | """
train_priority.py — Train GBR Priority Predictor (port from DAHS_1)
Trains a GradientBoostingRegressor on the priority dataset to predict
a continuous job priority score used by the Hybrid-Priority scheduler.
Outputs:
- models/priority_gbr.joblib
- results/plots/shap_summary.png
"""
from __future__ import annotations
import logging
import warnings
from pathlib import Path
import json
import joblib
import matplotlib
matplotlib.use("Agg")
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import shap
from scipy.stats import pearsonr, spearmanr
from sklearn.ensemble import GradientBoostingRegressor
from sklearn.metrics import (
explained_variance_score,
max_error,
mean_absolute_error,
mean_absolute_percentage_error,
mean_squared_error,
median_absolute_error,
r2_score,
)
from sklearn.model_selection import KFold, cross_val_score, train_test_split
warnings.filterwarnings("ignore")
logger = logging.getLogger(__name__)
DATA_PATH = Path(__file__).parent.parent / "data" / "raw" / "priority_dataset.csv"
MODELS_DIR = Path(__file__).parent.parent / "models"
RESULTS_DIR = Path(__file__).parent.parent / "results"
PLOTS_DIR = RESULTS_DIR / "plots"
def train_priority_model(data_path: Path = DATA_PATH) -> GradientBoostingRegressor:
"""Train and evaluate the GBR priority predictor.
Returns
-------
GradientBoostingRegressor
Fitted model.
"""
MODELS_DIR.mkdir(parents=True, exist_ok=True)
PLOTS_DIR.mkdir(parents=True, exist_ok=True)
logger.info("Loading priority dataset from %s", data_path)
df = pd.read_csv(data_path)
# Bug fix from DAHS_1: use replace + dropna (not nan_to_num alone)
df = df.replace([np.inf, -np.inf], np.nan).dropna()
feature_cols = [c for c in df.columns if c != "priority_score"]
X = df[feature_cols].values.astype(np.float32)
y = df["priority_score"].values.astype(np.float32)
logger.info("Priority dataset shape: X=%s, y=%s", X.shape, y.shape)
X_train, X_test, y_train, y_test = train_test_split(
X, y, test_size=0.20, random_state=42
)
model = GradientBoostingRegressor(
n_estimators=300,
max_depth=6,
learning_rate=0.05,
subsample=0.8,
min_samples_leaf=5,
random_state=42,
)
logger.info("Training GradientBoostingRegressor ...")
model.fit(X_train, y_train)
y_pred = model.predict(X_test)
residuals = y_test - y_pred
r2 = float(r2_score(y_test, y_pred))
mae = float(mean_absolute_error(y_test, y_pred))
medae = float(median_absolute_error(y_test, y_pred))
rmse = float(np.sqrt(mean_squared_error(y_test, y_pred)))
evs = float(explained_variance_score(y_test, y_pred))
maxe = float(max_error(y_test, y_pred))
# MAPE: guard against zero targets
try:
mape = float(mean_absolute_percentage_error(
np.where(np.abs(y_test) < 1e-6, 1e-6, y_test), y_pred
))
except Exception:
mape = float("nan")
pearson_r, pearson_p = pearsonr(y_test, y_pred)
spearman_r, spearman_p = spearmanr(y_test, y_pred)
print(f"[GBR] Test R^2: {r2:.4f}")
print(f"[GBR] Test MAE: {mae:.4f} (median: {medae:.4f})")
print(f"[GBR] Test RMSE: {rmse:.4f}")
print(f"[GBR] Test MAPE: {mape:.4f}")
print(f"[GBR] Pearson r: {pearson_r:.4f} (p={pearson_p:.2e})")
print(f"[GBR] Spearman ρ: {spearman_r:.4f} (p={spearman_p:.2e})")
logger.info("GBR Test -> R^2=%.4f MAE=%.4f RMSE=%.4f MAPE=%.4f", r2, mae, rmse, mape)
cv = KFold(n_splits=5, shuffle=True, random_state=42)
cv_r2 = cross_val_score(model, X_train, y_train, cv=cv, scoring="r2", n_jobs=-1)
cv_mae = -cross_val_score(model, X_train, y_train, cv=cv,
scoring="neg_mean_absolute_error", n_jobs=-1)
print(f"[GBR] 5-Fold CV R^2: {cv_r2.mean():.4f} +/- {cv_r2.std():.4f}")
print(f"[GBR] 5-Fold CV MAE: {cv_mae.mean():.4f} +/- {cv_mae.std():.4f}")
logger.info("GBR CV R^2: %.4f +/- %.4f", cv_r2.mean(), cv_r2.std())
model_path = MODELS_DIR / "priority_gbr.joblib"
joblib.dump(model, model_path)
logger.info("Saved model -> %s", model_path)
# ------------------------------------------------------------------
# Persist comprehensive metrics JSON (paper-ready)
# ------------------------------------------------------------------
RESULTS_DIR.mkdir(parents=True, exist_ok=True)
metrics = {
"model": "GradientBoostingRegressor",
"n_train": int(X_train.shape[0]),
"n_test": int(X_test.shape[0]),
"n_features": int(X_train.shape[1]),
"test": {
"r2": r2,
"explained_variance": evs,
"mae": mae,
"median_abs_err": medae,
"rmse": rmse,
"mape": mape,
"max_error": maxe,
"pearson_r": float(pearson_r),
"pearson_p": float(pearson_p),
"spearman_rho": float(spearman_r),
"spearman_p": float(spearman_p),
},
"residuals": {
"mean": float(residuals.mean()),
"std": float(residuals.std()),
"p05": float(np.percentile(residuals, 5)),
"p50": float(np.percentile(residuals, 50)),
"p95": float(np.percentile(residuals, 95)),
},
"cv": {
"r2_mean": float(cv_r2.mean()),
"r2_std": float(cv_r2.std()),
"r2_folds": [float(s) for s in cv_r2],
"mae_mean": float(cv_mae.mean()),
"mae_std": float(cv_mae.std()),
"mae_folds": [float(s) for s in cv_mae],
},
}
with open(RESULTS_DIR / "priority_metrics.json", "w", encoding="utf-8") as f:
json.dump(metrics, f, indent=2)
logger.info("Saved priority_metrics.json")
# ------------------------------------------------------------------
# Diagnostic plots: actual-vs-predicted + residuals
# ------------------------------------------------------------------
try:
fig, axes = plt.subplots(1, 2, figsize=(14, 6))
fig.patch.set_facecolor("#0f1117")
for ax in axes:
ax.set_facecolor("#1a1d27")
ax.tick_params(colors="#cccccc")
# Actual vs predicted
ax = axes[0]
ax.scatter(y_test, y_pred, s=8, alpha=0.4, color="#4fc3f7")
lo, hi = float(min(y_test.min(), y_pred.min())), float(max(y_test.max(), y_pred.max()))
ax.plot([lo, hi], [lo, hi], "--", color="#e57373", linewidth=1.5, label="y = x")
ax.set_xlabel("Actual priority", color="#e0e0e0")
ax.set_ylabel("Predicted priority", color="#e0e0e0")
ax.set_title(f"GBR — Actual vs Predicted (R²={r2:.3f})", color="#e0e0e0")
ax.legend()
# Residuals
ax = axes[1]
ax.hist(residuals, bins=50, color="#81c784", alpha=0.85, edgecolor="#0f1117")
ax.axvline(0, color="#e57373", linestyle="--", linewidth=1)
ax.set_xlabel("Residual (actual − predicted)", color="#e0e0e0")
ax.set_ylabel("Count", color="#e0e0e0")
ax.set_title(f"Residuals (μ={residuals.mean():.3f}, σ={residuals.std():.3f})",
color="#e0e0e0")
plt.tight_layout()
plt.savefig(PLOTS_DIR / "priority_diagnostics.png", dpi=150, facecolor="#0f1117")
plt.close()
except Exception as e: # noqa: BLE001
logger.warning("Priority diagnostic plot failed: %s", e)
_generate_shap_plot(model, X_test, feature_cols)
return model
def _generate_shap_plot(
model: GradientBoostingRegressor,
X_sample: np.ndarray,
feature_names: list,
) -> None:
"""Generate and save SHAP beeswarm summary plot."""
logger.info("Computing SHAP values ...")
sample_size = min(500, X_sample.shape[0])
X_shap = X_sample[:sample_size]
explainer = shap.TreeExplainer(model)
shap_values = explainer.shap_values(X_shap)
fig, ax = plt.subplots(figsize=(10, 8))
fig.patch.set_facecolor("#0f1117")
ax.set_facecolor("#1a1d27")
shap.summary_plot(
shap_values,
X_shap,
feature_names=feature_names,
show=False,
plot_type="dot",
color_bar=True,
max_display=18,
)
plt.gcf().set_facecolor("#0f1117")
plt.title("Priority GBR — SHAP Feature Importance", color="white", fontsize=14, pad=12)
plt.tight_layout()
shap_path = PLOTS_DIR / "shap_summary.png"
plt.savefig(shap_path, dpi=150, bbox_inches="tight", facecolor="#0f1117")
plt.close()
logger.info("Saved SHAP plot -> %s", shap_path)
if __name__ == "__main__":
logging.basicConfig(level=logging.INFO, format="%(asctime)s %(levelname)s %(message)s")
train_priority_model()
|