Update app.py

app.py

@@ -679,6 +679,33 @@ with gr.Blocks() as interface:
                 #         save_to_excel(all_rows, "", "", output_file_path, is_resume=False)
                 #     log_lines.append(f"✅ Processed {acc} ({i+1}/{total})")
                 print("📄 Processing accession:", acc)
+                # --- Before calling summarize_results ---
+                samples_left = total - i  # including current one
+                estimated_seconds_left = samples_left * 100  # your observed average per sample
+                
+                log_lines.append(
+                    f"Running... usually ~100s per sample"
+                )
+                log_lines.append(
+                    f"⏳ Estimated time left: ~{estimated_seconds_left} seconds ({samples_left} sample{'s' if samples_left > 1 else ''} remaining)"
+                )
+                
+                # Yield update to UI before the heavy pipeline call
+                yield (
+                    make_html_table(all_rows),
+                    gr.update(visible=True),          # results_group
+                    gr.update(visible=False),         # download_file
+                    "",                               # usage_display
+                    "⏳ Processing...",                # status
+                    "\n".join(log_lines),             # progress_box
+                    gr.update(visible=False),         # run_button
+                    gr.update(visible=True),          # stop_button
+                    gr.update(visible=True),          # reset_button
+                    gr.update(visible=False),         # raw_text
+                    gr.update(visible=False),         # file_upload
+                    gr.update(value=f"Processed/Input accessions: {', '.join(accessions)}", visible=True),  # processed_info
+                    gr.update(visible=False)          # hide NPS modal
+                )
 
                 # Run summarize_results in a separate process with stop flag support
                 success, rows = run_with_timeout(