Update pipeline.py

pipeline.py

@@ -272,7 +272,7 @@ Entrez.email = "your_email@example.com"   # required by NCBI
 
 async def extractSources(meta, linksWithTexts, links, all_output, acc, saveLinkFolder, niche_cases=None):
     article_text = ""
-    iso, title, doi, pudID, features = meta["country"], meta["specific_location"], meta["ethnicity"], meta["sample_type"], meta["collection_date"], meta["isolate"], meta["title"], meta["doi"], meta["pubmed_id"], meta["all_features"]
+    iso, title, doi, pudID, features = meta["isolate"], meta["title"], meta["doi"], meta["pubmed_id"], meta["all_features"]
     if doi != "unknown":
         link = 'https://doi.org/' + doi
         # get the file to create listOfFile for each id