Update confidence_score.py

confidence_score.py

@@ -133,13 +133,12 @@ def compute_confidence_score_and_tier(
 
     # ---------- Signal 2: Cross-source consistency ----------
     print("standardize pre_country")
-    pred_country = standardize_location.smart_country_lookup(signals.get("predicted_country").lower())
-    print("pred country after standardizing: ", pred_country)
-    if pred_country == "not found":            
-        pred_country = normalize_country(signals.get("predicted_country"))
-    gb_country = standardize_location.smart_country_lookup(signals.get("genbank_country").lower()) 
-    if gb_country == "not found":  
-        gb_country = normalize_country(signals.get("genbank_country"))
+    pred_country = signals.get("predicted_country")
+    if pred_country:
+      pred_country = standardize_location.smart_country_lookup(signals.get("predicted_country").lower())
+    gb_country = signals.get("genbank_country")
+    if gb_country:  
+      gb_country = standardize_location.smart_country_lookup(signals.get("genbank_country").lower()) 
     print("both pred_country and gb_country after standardizing: ", pred_country, gb_country)
     cons_cfg = rules["consistency"]
     print("start compare gb country and pre country")