Update app.py
Browse files
app.py
CHANGED
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@@ -1,5 +1,4 @@
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import streamlit as st
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from stmol import showmol
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import py3Dmol
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import requests
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import biotite.structure.io as bsio
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@@ -10,6 +9,9 @@ from Bio.Blast import NCBIWWW, NCBIXML
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from Bio.Seq import Seq
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from Bio.SeqRecord import SeqRecord
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import time
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urllib3.disable_warnings(urllib3.exceptions.InsecureRequestWarning)
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@@ -156,6 +158,70 @@ if st.session_state.structure_info:
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mime='text/plain',
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)
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st.markdown("""
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## What to do next:
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If you find interesting results from the sequence folding, you can explore further:
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import streamlit as st
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import py3Dmol
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import requests
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import biotite.structure.io as bsio
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from Bio.Seq import Seq
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from Bio.SeqRecord import SeqRecord
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import time
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import urllib.parse
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import base64
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urllib3.disable_warnings(urllib3.exceptions.InsecureRequestWarning)
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mime='text/plain',
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)
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def render_mol(pdb):
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pdbview = py3Dmol.view(width=800, height=500)
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pdbview.addModel(pdb, 'pdb')
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pdbview.setStyle({'cartoon': {'color': 'spectrum'}})
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pdbview.setBackgroundColor('white')
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pdbview.zoomTo()
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pdbview.zoom(2, 800)
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pdbview.spin(True)
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showmol(pdbview, height=500, width=800)
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return pdbview
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def get_protein_image(pdbview):
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pdbview.zoom(0.8)
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pdbview.render()
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png = pdbview.pngImage()
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return base64.b64encode(png).decode('utf-8')
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def share_on_twitter(word1, word2, word3, length, plddt):
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tweet_text = f"I generated a unique protein structure from the words '{word1}', '{word2}', and '{word3}' with length {length}! plDDT Score: {plddt}% Try it yourself at [Your App URL] #GenPro2 #ProteinFolding"
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tweet_url = f"https://twitter.com/intent/tweet?text={urllib.parse.quote(tweet_text)}"
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return tweet_url
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# In the main app code, modify the structure display section:
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if st.session_state.structure_info:
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info = st.session_state.structure_info
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st.subheader(f'Predicted protein structure using seed: {info["word1"]}, {info["word2"]}, and {info["word3"]} + length {info["sequence_length"]}')
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pdbview = render_mol(info['pdb_string'])
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st.subheader('plDDT Score')
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st.write('plDDT is a per-residue estimate of the confidence in prediction on a scale from 0-100%.')
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plddt_score = int(info["b_value"] * 100)
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st.info(f'Average plDDT: {plddt_score}%')
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col1, col2, col3 = st.columns(3)
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with col1:
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if st.button('Analyze Protein'):
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perform_blast_analysis(st.session_state.sequence)
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with col2:
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st.download_button(
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label="Download PDB",
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data=info['pdb_string'],
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file_name='predicted.pdb',
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mime='text/plain',
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)
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with col3:
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protein_image = get_protein_image(pdbview)
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st.download_button(
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label="Download Image",
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data=base64.b64decode(protein_image),
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file_name="protein_structure.png",
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mime="image/png"
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)
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st.subheader("Share your unique protein on X")
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st.write("1. Download the protein image using the 'Download Image' button above.")
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st.write("2. Click the 'Share Results' button below to open a pre-filled tweet.")
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st.write("3. Attach the downloaded image to your tweet before posting.")
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tweet_url = share_on_twitter(info["word1"], info["word2"], info["word3"], info["sequence_length"], plddt_score)
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st.markdown(f"[Share Results]({tweet_url})")
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st.markdown("""
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## What to do next:
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If you find interesting results from the sequence folding, you can explore further:
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