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syntheogenesis / dee /core

350 kB

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6 contributors

History: 51 commits

Tengo Gzirishvili

Highlight mutated codons in red on generated variant DNA

d748f97 about 3 hours ago

__init__.py

81 Bytes
Initial deploy · DEE Flask app via Docker SDK about 2 months ago
active_learning.py

7.27 kB
Learning flywheel v1: Directed-Evolution active-learning loop (DBTL) about 1 month ago
agent.py

16.9 kB
Turing can now fetch a sequence by gene name or accession — new fetch_sequence tool about 4 hours ago
agent_tools.py

22.8 kB
Highlight mutated codons in red on generated variant DNA about 3 hours ago
aggregate.py

11.3 kB
Wire cross-user field priors into Turing's chat tools (were REST-only) about 4 hours ago
align.py

3.7 kB
Add pairwise sequence alignment (Needleman–Wunsch / Smith–Waterman) about 1 month ago
base_editor.py

10.8 kB
CRISPR M1: base-editing design mode (CBE/ABE + iSTOP + AA consequence) about 1 month ago
cloning.py

17.5 kB
Adversarial audit of Plasmid Studio: fix XSS, DoS, and input-validation gaps about 1 month ago
codon.py

19.2 kB
Truthful restriction-site reporting + UI gate about 2 months ago
crispr.py

69.8 kB
CRISPR M5: structure viewer — cut site on the AlphaFold model about 1 month ago
crispr_cloning.py

10.2 kB
CRISPR Phase 2C-1 — cloning oligos + vendor buttons + vector picker about 1 month ago
exon.py

14.4 kB
De-green UI + security hardening (audit fixes) 14 days ago
ip_radar.py

10.7 kB
IP Radar patents (env-gated) + Toxicity & Synthesis Oracle (Red Team) about 1 month ago
offtarget.py

17.8 kB
Genome off-target — non-blocking + background prewarm + status banner about 1 month ago
outcomes.py

15.4 kB
Wire cross-user field priors into Turing's chat tools (were REST-only) about 4 hours ago
plasmid.py

21.9 kB
Plasmid: accept SnapGene .dna; fix button hover (black fill, both themes) about 1 month ago
primers.py

38.9 kB
feat: primer/PCR versatility — design, multiplex, local specificity (backend) about 1 month ago
resolve.py

9.38 kB
Fix AlphaFold viewer showing nothing (stale model version + silent 404) about 1 month ago
scoring.py

4.93 kB
Turing: wire ESM-2, fix auth header, friendly credits message, tool cards about 17 hours ago
sequence.py

27.4 kB
Audit H/M cleanup: H2/H3/H5/H6/M3/M4/M5/M6/M7 about 2 months ago