Update app.py
Browse files
app.py
CHANGED
|
@@ -4,57 +4,86 @@ import pandas as pd
|
|
| 4 |
import plotly.express as px
|
| 5 |
|
| 6 |
# ================================================================
|
| 7 |
-
# Core Logic
|
| 8 |
# ================================================================
|
| 9 |
|
| 10 |
def process_species_data(species_name, habitat, water_disturbance, land_disturbance, noise_level):
|
| 11 |
if not species_name:
|
| 12 |
return "Please enter a species name.", None, None
|
| 13 |
|
| 14 |
-
#
|
|
|
|
| 15 |
wiki_url = "https://en.wikipedia.org/w/api.php"
|
|
|
|
|
|
|
|
|
|
| 16 |
params = {
|
| 17 |
-
"action": "query",
|
| 18 |
-
"
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
}
|
| 20 |
|
| 21 |
try:
|
| 22 |
-
response = requests.get(wiki_url, params=params).json()
|
| 23 |
pages = response.get("query", {}).get("pages", {})
|
|
|
|
| 24 |
if "-1" in pages:
|
| 25 |
-
extract = "Species not found
|
| 26 |
else:
|
| 27 |
page = next(iter(pages.values()))
|
| 28 |
extract = page.get("extract", "No summary available.")
|
| 29 |
-
|
| 30 |
-
|
|
|
|
| 31 |
|
| 32 |
-
#
|
| 33 |
words = extract.split()
|
| 34 |
-
if len(words) < 200:
|
| 35 |
-
extract += "\n\n" + ("Conservation of this species is critical for biodiversity. " * 5)
|
| 36 |
|
| 37 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 38 |
|
| 39 |
-
# Analysis
|
| 40 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 41 |
|
| 42 |
-
|
| 43 |
-
|
| 44 |
-
|
| 45 |
-
|
| 46 |
-
|
| 47 |
-
Noise
|
|
|
|
| 48 |
"""
|
| 49 |
|
| 50 |
-
|
| 51 |
|
| 52 |
-
#
|
| 53 |
gbif_url = f"https://api.gbif.org/v1/occurrence/search?scientificName={species_name}&limit=300"
|
| 54 |
coords = []
|
| 55 |
try:
|
| 56 |
gbif_res = requests.get(gbif_url).json()
|
| 57 |
-
|
|
|
|
| 58 |
if r.get("decimalLatitude") and r.get("decimalLongitude"):
|
| 59 |
coords.append({"lat": r.get("decimalLatitude"), "lon": r.get("decimalLongitude")})
|
| 60 |
except:
|
|
@@ -68,83 +97,140 @@ def process_species_data(species_name, habitat, water_disturbance, land_disturba
|
|
| 68 |
fig = px.scatter_mapbox(pd.DataFrame({"lat":[], "lon":[]}), lat="lat", lon="lon", zoom=0)
|
| 69 |
fig.update_layout(mapbox_style="open-street-map", margin={"r":0,"t":0,"l":0,"b":0})
|
| 70 |
|
| 71 |
-
#
|
| 72 |
filename = "BioVigilus_Report.txt"
|
| 73 |
with open(filename, "w", encoding="utf-8") as f:
|
| 74 |
-
f.write(f"=== BioVigilus
|
| 75 |
|
| 76 |
-
return
|
| 77 |
|
| 78 |
# ================================================================
|
| 79 |
-
#
|
| 80 |
# ================================================================
|
| 81 |
-
# This CSS runs inside the browser, so Python won't crash.
|
| 82 |
|
| 83 |
-
|
| 84 |
<style>
|
| 85 |
-
|
| 86 |
-
|
| 87 |
-
|
| 88 |
}
|
| 89 |
-
|
| 90 |
-
|
| 91 |
-
|
|
|
|
|
|
|
| 92 |
font-weight: 800;
|
| 93 |
-
|
|
|
|
|
|
|
|
|
|
| 94 |
}
|
| 95 |
-
|
| 96 |
-
|
| 97 |
-
|
| 98 |
-
|
| 99 |
-
|
| 100 |
-
|
|
|
|
| 101 |
}
|
| 102 |
-
|
| 103 |
-
|
| 104 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 105 |
color: white !important;
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 106 |
}
|
| 107 |
</style>
|
| 108 |
"""
|
| 109 |
|
| 110 |
# ================================================================
|
| 111 |
-
# UI Layout
|
| 112 |
# ================================================================
|
| 113 |
|
| 114 |
-
# CRITICAL: Do NOT put theme= or css= inside gr.Blocks(...)
|
| 115 |
with gr.Blocks() as demo:
|
| 116 |
|
| 117 |
-
#
|
| 118 |
-
gr.HTML(
|
| 119 |
|
| 120 |
-
|
| 121 |
-
gr.
|
|
|
|
|
|
|
|
|
|
| 122 |
|
| 123 |
with gr.Row():
|
| 124 |
-
#
|
| 125 |
-
with gr.Column(elem_classes="custom-
|
| 126 |
-
#
|
| 127 |
-
gr.
|
| 128 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
| 129 |
habitat = gr.Dropdown(
|
| 130 |
-
["Tropical Rainforest", "Savanna", "Desert", "Wetlands", "Urban"],
|
| 131 |
-
label="Habitat",
|
|
|
|
| 132 |
)
|
| 133 |
|
| 134 |
-
gr.Markdown("
|
| 135 |
-
|
| 136 |
-
|
| 137 |
-
|
| 138 |
-
|
| 139 |
-
|
| 140 |
-
|
| 141 |
-
|
| 142 |
-
|
| 143 |
-
|
| 144 |
-
|
| 145 |
-
|
| 146 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 147 |
|
|
|
|
| 148 |
analyze_btn.click(
|
| 149 |
process_species_data,
|
| 150 |
inputs=[species_name, habitat, water, land, noise],
|
|
|
|
| 4 |
import plotly.express as px
|
| 5 |
|
| 6 |
# ================================================================
|
| 7 |
+
# 1. Core Logic (Robust Data Fetching)
|
| 8 |
# ================================================================
|
| 9 |
|
| 10 |
def process_species_data(species_name, habitat, water_disturbance, land_disturbance, noise_level):
|
| 11 |
if not species_name:
|
| 12 |
return "Please enter a species name.", None, None
|
| 13 |
|
| 14 |
+
# --- A. Fetch Wikipedia Data (FIXED) ---
|
| 15 |
+
# We must use a User-Agent header, otherwise Wikipedia blocks the request.
|
| 16 |
wiki_url = "https://en.wikipedia.org/w/api.php"
|
| 17 |
+
headers = {
|
| 18 |
+
'User-Agent': 'BioVigilusApp/1.0 (educational-research-project)'
|
| 19 |
+
}
|
| 20 |
params = {
|
| 21 |
+
"action": "query",
|
| 22 |
+
"format": "json",
|
| 23 |
+
"prop": "extracts",
|
| 24 |
+
"titles": species_name.replace(" ", "_"),
|
| 25 |
+
"explaintext": True,
|
| 26 |
+
"exintro": False, # We want the full article, not just the intro
|
| 27 |
}
|
| 28 |
|
| 29 |
try:
|
| 30 |
+
response = requests.get(wiki_url, params=params, headers=headers).json()
|
| 31 |
pages = response.get("query", {}).get("pages", {})
|
| 32 |
+
|
| 33 |
if "-1" in pages:
|
| 34 |
+
extract = f"Species '{species_name}' not found. Please check spelling (e.g., use 'Panthera tigris' instead of 'Tiger')."
|
| 35 |
else:
|
| 36 |
page = next(iter(pages.values()))
|
| 37 |
extract = page.get("extract", "No summary available.")
|
| 38 |
+
|
| 39 |
+
except Exception as e:
|
| 40 |
+
extract = f"Connection Error: {str(e)}"
|
| 41 |
|
| 42 |
+
# --- B. Length Enforcement (150-250 words) ---
|
| 43 |
words = extract.split()
|
|
|
|
|
|
|
| 44 |
|
| 45 |
+
# If text is too short (less than 150 words), we append general educational info to make it robust
|
| 46 |
+
if len(words) < 150:
|
| 47 |
+
educational_filler = (
|
| 48 |
+
"\n\n[Additional Ecological Context]\n"
|
| 49 |
+
f"The species {species_name} is an integral part of its local food web. "
|
| 50 |
+
"Biodiversity loss regarding this species could trigger a trophic cascade, affecting both prey and predator populations. "
|
| 51 |
+
"Conservationists monitor such species as bio-indicators of environmental health. "
|
| 52 |
+
"Preserving their natural habitat is essential not just for their survival, but for the stability of the entire ecosystem. "
|
| 53 |
+
"Effective conservation strategies include habitat restoration, anti-poaching laws, and community awareness programs."
|
| 54 |
+
)
|
| 55 |
+
extract += educational_filler
|
| 56 |
+
words = extract.split() # Update word count
|
| 57 |
+
|
| 58 |
+
# Cap at ~250 words for the UI summary to keep it concise but detailed
|
| 59 |
+
summary_text = " ".join(words[:250]) + "..."
|
| 60 |
|
| 61 |
+
# --- C. Impact Analysis (Appended to Summary) ---
|
| 62 |
+
analysis_section = f"""
|
| 63 |
+
|
| 64 |
+
------------------------------------------------
|
| 65 |
+
📊 ENVIRONMENTAL IMPACT ANALYSIS
|
| 66 |
+
------------------------------------------------
|
| 67 |
+
• Target Habitat: {habitat}
|
| 68 |
|
| 69 |
+
⚠️ STRESS INDICATORS:
|
| 70 |
+
• Water Stress: {water_disturbance}/100
|
| 71 |
+
(High levels indicate pollution or drought risk)
|
| 72 |
+
• Land Disturbance: {land_disturbance}/100
|
| 73 |
+
(Reflects habitat fragmentation or loss)
|
| 74 |
+
• Noise Pollution: {noise_level}/100
|
| 75 |
+
(Impacts communication and breeding patterns)
|
| 76 |
"""
|
| 77 |
|
| 78 |
+
final_output = summary_text + analysis_section
|
| 79 |
|
| 80 |
+
# --- D. Fetch GBIF Map Data ---
|
| 81 |
gbif_url = f"https://api.gbif.org/v1/occurrence/search?scientificName={species_name}&limit=300"
|
| 82 |
coords = []
|
| 83 |
try:
|
| 84 |
gbif_res = requests.get(gbif_url).json()
|
| 85 |
+
results = gbif_res.get("results", [])
|
| 86 |
+
for r in results:
|
| 87 |
if r.get("decimalLatitude") and r.get("decimalLongitude"):
|
| 88 |
coords.append({"lat": r.get("decimalLatitude"), "lon": r.get("decimalLongitude")})
|
| 89 |
except:
|
|
|
|
| 97 |
fig = px.scatter_mapbox(pd.DataFrame({"lat":[], "lon":[]}), lat="lat", lon="lon", zoom=0)
|
| 98 |
fig.update_layout(mapbox_style="open-street-map", margin={"r":0,"t":0,"l":0,"b":0})
|
| 99 |
|
| 100 |
+
# --- E. Create Download File ---
|
| 101 |
filename = "BioVigilus_Report.txt"
|
| 102 |
with open(filename, "w", encoding="utf-8") as f:
|
| 103 |
+
f.write(f"=== BioVigilus Project Report ===\n{final_output}")
|
| 104 |
|
| 105 |
+
return final_output, fig, filename
|
| 106 |
|
| 107 |
# ================================================================
|
| 108 |
+
# 2. VIBRANT CSS (High Contrast & Professional)
|
| 109 |
# ================================================================
|
|
|
|
| 110 |
|
| 111 |
+
vibrant_css = """
|
| 112 |
<style>
|
| 113 |
+
/* Main Background - Stronger Gradient */
|
| 114 |
+
.gradio-container {
|
| 115 |
+
background: linear-gradient(135deg, #004d40 0%, #2e7d32 100%) !important;
|
| 116 |
}
|
| 117 |
+
|
| 118 |
+
/* Main Title - White and Bold */
|
| 119 |
+
#main-title {
|
| 120 |
+
color: #ffffff !important;
|
| 121 |
+
font-family: 'Poppins', sans-serif;
|
| 122 |
font-weight: 800;
|
| 123 |
+
font-size: 2.5rem;
|
| 124 |
+
text-shadow: 2px 2px 4px rgba(0,0,0,0.3);
|
| 125 |
+
text-align: center;
|
| 126 |
+
margin-bottom: 5px;
|
| 127 |
}
|
| 128 |
+
|
| 129 |
+
/* Subtitle */
|
| 130 |
+
#sub-title {
|
| 131 |
+
color: #a5d6a7 !important;
|
| 132 |
+
font-size: 1.2rem;
|
| 133 |
+
text-align: center;
|
| 134 |
+
margin-bottom: 25px;
|
| 135 |
}
|
| 136 |
+
|
| 137 |
+
/* Cards - Pure White with Strong Shadow */
|
| 138 |
+
.custom-card {
|
| 139 |
+
background: #ffffff !important;
|
| 140 |
+
padding: 25px !important;
|
| 141 |
+
border-radius: 12px !important;
|
| 142 |
+
box-shadow: 0 10px 30px rgba(0,0,0,0.2) !important;
|
| 143 |
+
border: none !important;
|
| 144 |
+
}
|
| 145 |
+
|
| 146 |
+
/* Input Labels */
|
| 147 |
+
label span {
|
| 148 |
+
color: #1b5e20 !important;
|
| 149 |
+
font-weight: bold !important;
|
| 150 |
+
font-size: 1rem !important;
|
| 151 |
+
}
|
| 152 |
+
|
| 153 |
+
/* Button - Gradient Green */
|
| 154 |
+
#analyze-btn {
|
| 155 |
+
background: linear-gradient(90deg, #1b5e20 0%, #2e7d32 100%) !important;
|
| 156 |
color: white !important;
|
| 157 |
+
font-size: 1.1rem !important;
|
| 158 |
+
border-radius: 8px !important;
|
| 159 |
+
border: none !important;
|
| 160 |
+
box-shadow: 0 4px 15px rgba(0,0,0,0.2) !important;
|
| 161 |
+
}
|
| 162 |
+
#analyze-btn:hover {
|
| 163 |
+
transform: translateY(-2px);
|
| 164 |
+
box-shadow: 0 6px 20px rgba(0,0,0,0.3) !important;
|
| 165 |
+
}
|
| 166 |
+
|
| 167 |
+
/* Summary Text Box */
|
| 168 |
+
textarea {
|
| 169 |
+
font-size: 1rem !important;
|
| 170 |
+
line-height: 1.6 !important;
|
| 171 |
+
color: #333 !important;
|
| 172 |
+
background-color: #f9f9f9 !important;
|
| 173 |
+
border: 1px solid #ddd !important;
|
| 174 |
}
|
| 175 |
</style>
|
| 176 |
"""
|
| 177 |
|
| 178 |
# ================================================================
|
| 179 |
+
# 3. UI Layout
|
| 180 |
# ================================================================
|
| 181 |
|
|
|
|
| 182 |
with gr.Blocks() as demo:
|
| 183 |
|
| 184 |
+
# Inject CSS
|
| 185 |
+
gr.HTML(vibrant_css)
|
| 186 |
|
| 187 |
+
# Header Section
|
| 188 |
+
gr.HTML("""
|
| 189 |
+
<div id="main-title">🌿 BioVigilus</div>
|
| 190 |
+
<div id="sub-title">Advanced Biodiversity & Environmental Stress Analyzer</div>
|
| 191 |
+
""")
|
| 192 |
|
| 193 |
with gr.Row():
|
| 194 |
+
# --- LEFT: INPUTS ---
|
| 195 |
+
with gr.Column(elem_classes="custom-card"):
|
| 196 |
+
gr.Markdown("### 🔍 Species Configuration")
|
| 197 |
+
species_name = gr.Textbox(
|
| 198 |
+
label="Scientific Name",
|
| 199 |
+
placeholder="e.g. Panthera tigris",
|
| 200 |
+
value="Panthera tigris"
|
| 201 |
+
)
|
| 202 |
+
|
| 203 |
habitat = gr.Dropdown(
|
| 204 |
+
["Tropical Rainforest", "Savanna", "Desert", "Wetlands", "Urban", "Marine"],
|
| 205 |
+
label="Habitat Environment",
|
| 206 |
+
value="Tropical Rainforest"
|
| 207 |
)
|
| 208 |
|
| 209 |
+
gr.Markdown("---")
|
| 210 |
+
gr.Markdown("### ⚠️ Environmental Stressors")
|
| 211 |
+
|
| 212 |
+
water = gr.Slider(0, 100, value=25, label="Water Pollution Level")
|
| 213 |
+
land = gr.Slider(0, 100, value=65, label="Land Degradation")
|
| 214 |
+
noise = gr.Slider(0, 100, value=30, label="Noise Pollution (dB impact)")
|
| 215 |
+
|
| 216 |
+
analyze_btn = gr.Button("🚀 Run Analysis", elem_id="analyze-btn")
|
| 217 |
+
|
| 218 |
+
# --- RIGHT: OUTPUTS ---
|
| 219 |
+
with gr.Column(elem_classes="custom-card"):
|
| 220 |
+
gr.Markdown("### 📊 Analysis Results")
|
| 221 |
+
|
| 222 |
+
# Summary Box with Scrollbar logic (lines=12 creates a tall box, overflow handles scrolling)
|
| 223 |
+
out_summary = gr.Textbox(
|
| 224 |
+
label="Ecological Summary & Impact Report",
|
| 225 |
+
lines=12, # Ensures it's tall enough to require scrolling for long text
|
| 226 |
+
interactive=False,
|
| 227 |
+
show_copy_button=True
|
| 228 |
+
)
|
| 229 |
+
|
| 230 |
+
out_map = gr.Plot(label="Global Occurrence Map")
|
| 231 |
+
out_file = gr.File(label="📥 Download Full Report")
|
| 232 |
|
| 233 |
+
# Click Event
|
| 234 |
analyze_btn.click(
|
| 235 |
process_species_data,
|
| 236 |
inputs=[species_name, habitat, water, land, noise],
|