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Browse files- bayesian_core.py +100 -40
- bayesian_utils.py +30 -14
bayesian_core.py
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@@ -18,7 +18,7 @@ class BayesianHierarchicalAnalyzer:
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# 儲存各 session 的分析結果
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_session_results = {}
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def __init__(self, session_id):
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"""
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初始化分析器
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@@ -30,53 +30,78 @@ class BayesianHierarchicalAnalyzer:
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self.df = None
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self.model = None
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self.trace = None
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def load_data(self, csv_path_or_df):
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"""
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載入資料
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Args:
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csv_path_or_df: CSV 檔案路徑或 DataFrame
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"""
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if isinstance(csv_path_or_df, str):
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self.df = pd.read_csv(csv_path_or_df)
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else:
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self.df = csv_path_or_df.copy()
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return True
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def validate_data(self):
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"""驗證資料有效性"""
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if self.df is None:
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raise ValueError("請先載入資料")
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# 檢查數值欄位
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if not pd.api.types.is_numeric_dtype(self.df[col]):
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raise ValueError(f"欄位 {col} 必須是數值類型")
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# 檢查邏輯約束
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if (self.df[
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raise ValueError("
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if (self.df[
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raise ValueError("
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return True
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def run_analysis(self, n_samples=2000, n_tune=1000, n_chains=2, target_accept=0.95):
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"""
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@@ -96,9 +121,19 @@ class BayesianHierarchicalAnalyzer:
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self.validate_data()
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# 準備資料
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trial_labels = self.df[
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num_trials = len(self.df)
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# 建立模型
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with pm.Model() as self.model:
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# --- 先驗分佈 (Priors) ---
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@@ -106,16 +141,29 @@ class BayesianHierarchicalAnalyzer:
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tau = pm.Gamma('tau', alpha=0.001, beta=0.001)
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sigma = pm.Deterministic('sigma', 1 / pm.math.sqrt(tau))
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# --- 各
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mu = pm.Normal('mu', mu=0, sigma=10, shape=num_trials)
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delta = pm.Normal('delta', mu=d, sigma=1 / pm.math.sqrt(tau), shape=num_trials)
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# --- 轉換與似然函數 (Logit Link & Likelihood) ---
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# --- 其他統計量 ---
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delta_new = pm.Normal('delta_new', mu=d, sigma=1 / pm.math.sqrt(tau))
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chains=n_chains,
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target_accept=target_accept,
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return_inferencedata=True,
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progressbar=False,
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discard_tuned_samples=False #
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)
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# 生成摘要統計
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summary = az.summary(self.trace, var_names=['d', 'sigma', 'or_speed'], hdi_prob=0.95)
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# 計算各
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delta_posterior = self.trace.posterior['delta'].values.reshape(-1, num_trials)
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delta_mean = delta_posterior.mean(axis=0)
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delta_std = delta_posterior.std(axis=0)
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# 判斷顯著性(HDI 不包含 0)
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delta_significant = (delta_hdi[:, 0] > 0) | (delta_hdi[:, 1] < 0)
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# 計算控制組和實驗組的勝率
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# 整理結果
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results = {
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'n_trials': num_trials,
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'trial_labels': trial_labels.tolist(),
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# 整體效應
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'overall': {
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'd_mean': float(summary.loc['d', 'mean']),
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@@ -175,15 +234,15 @@ class BayesianHierarchicalAnalyzer:
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'or_hdi_high': float(summary.loc['or_speed', 'hdi_97.5%']),
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},
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# 各
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'by_trial': {
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'delta_mean': delta_mean.tolist(),
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'delta_std': delta_std.tolist(),
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'delta_hdi_low': delta_hdi[:, 0].tolist(),
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'delta_hdi_high': delta_hdi[:, 1].tolist(),
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'delta_significant': delta_significant.tolist(),
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},
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# 原始資料
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return results
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except Exception as e:
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raise Exception(f"分析失敗: {str(e)}")
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def _compute_diagnostics(self, summary):
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"""計算收斂診斷指標"""
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try:
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# 儲存各 session 的分析結果
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_session_results = {}
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def __init__(self, session_id):
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"""
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初始化分析器
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self.df = None
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self.model = None
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self.trace = None
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# 👇 加入這些屬性
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self.col_trial_type = None # 配對名稱欄位
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self.col_control_win = None # 控制組勝場欄位
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self.col_control_total = None # 控制組總場欄位
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self.col_treatment_win = None # 實驗組勝場欄位
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self.col_treatment_total = None # 實驗組總場欄位
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def load_data(self, csv_path_or_df):
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"""
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載入資料 (自動識別欄位名稱)
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Args:
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csv_path_or_df: CSV 檔案路徑或 DataFrame
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Expected format:
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第 1 欄: 配對名稱 (Trial_Type)
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第 2 欄: 控制組勝場 (例如 water_win)
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第 3 欄: 控制組總場 (例如 water_battles)
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第 4 欄: 實驗組勝場 (例如 fire_win)
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第 5 欄: 實驗組總場 (例如 fire_battles)
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"""
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if isinstance(csv_path_or_df, str):
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self.df = pd.read_csv(csv_path_or_df)
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else:
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self.df = csv_path_or_df.copy()
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# 檢查欄位數量
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if len(self.df.columns) < 5:
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raise ValueError(f"資料至少需要 5 欄,目前只有 {len(self.df.columns)} 欄")
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# 自動識別欄位名稱 (假設前 5 欄按照固定順序)
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cols = self.df.columns.tolist()
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self.col_trial_type = cols[0]
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self.col_control_win = cols[1]
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self.col_control_total = cols[2]
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self.col_treatment_win = cols[3]
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self.col_treatment_total = cols[4]
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print(f"✓ 自動識別欄位:")
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print(f" - 配對名稱: {self.col_trial_type}")
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print(f" - 控制組: {self.col_control_win}/{self.col_control_total}")
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print(f" - 實驗組: {self.col_treatment_win}/{self.col_treatment_total}")
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return True
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def validate_data(self):
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"""驗證資料有效性"""
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if self.df is None:
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raise ValueError("請先載入資料")
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# 檢查數值欄位
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numeric_cols = [
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self.col_control_win,
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self.col_control_total,
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self.col_treatment_win,
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self.col_treatment_total
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]
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for col in numeric_cols:
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if not pd.api.types.is_numeric_dtype(self.df[col]):
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raise ValueError(f"欄位 {col} 必須是數值類型")
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# 檢查邏輯約束
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if (self.df[self.col_control_win] > self.df[self.col_control_total]).any():
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raise ValueError(f"{self.col_control_win} (勝場數) 不能大於 {self.col_control_total} (總場數)")
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if (self.df[self.col_treatment_win] > self.df[self.col_treatment_total]).any():
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raise ValueError(f"{self.col_treatment_win} (勝場數) 不能大於 {self.col_treatment_total} (總場數)")
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return True
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def run_analysis(self, n_samples=2000, n_tune=1000, n_chains=2, target_accept=0.95):
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"""
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self.validate_data()
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# 準備資料
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trial_labels = self.df[self.col_trial_type].values
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num_trials = len(self.df)
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# 提取欄位名稱用於模型
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control_win_name = self.col_control_win
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control_total_name = self.col_control_total
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treatment_win_name = self.col_treatment_win
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treatment_total_name = self.col_treatment_total
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# 提取前綴用於變數命名 (例如 "water_win" → "water")
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control_prefix = control_win_name.replace('_win', '').replace('_battles', '').replace('_total', '')
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treatment_prefix = treatment_win_name.replace('_win', '').replace('_battles', '').replace('_total', '')
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# 建立模型
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with pm.Model() as self.model:
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# --- 先驗分佈 (Priors) ---
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tau = pm.Gamma('tau', alpha=0.001, beta=0.001)
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sigma = pm.Deterministic('sigma', 1 / pm.math.sqrt(tau))
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# --- 各配對特定效應 (Pair-specific effects) ---
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mu = pm.Normal('mu', mu=0, sigma=10, shape=num_trials)
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delta = pm.Normal('delta', mu=d, sigma=1 / pm.math.sqrt(tau), shape=num_trials)
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# --- 轉換與似然函數 (Logit Link & Likelihood) ---
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# 使用動態命名
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p_control = pm.Deterministic(f'p_{control_prefix}', pm.math.invlogit(mu))
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p_treatment = pm.Deterministic(f'p_{treatment_prefix}', pm.math.invlogit(mu + delta))
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# 使用動態欄位名稱創建觀測值
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control_obs = pm.Binomial(
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f'{control_win_name}_obs',
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n=self.df[control_total_name].values,
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p=p_control,
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observed=self.df[control_win_name].values
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)
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treatment_obs = pm.Binomial(
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f'{treatment_win_name}_obs',
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n=self.df[treatment_total_name].values,
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p=p_treatment,
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observed=self.df[treatment_win_name].values
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)
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# --- 其他統計量 ---
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delta_new = pm.Normal('delta_new', mu=d, sigma=1 / pm.math.sqrt(tau))
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chains=n_chains,
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target_accept=target_accept,
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return_inferencedata=True,
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progressbar=False, # 在 Streamlit 中關閉進度條
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discard_tuned_samples=False # 保留 tune 樣本
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)
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# 生成摘要統計
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summary = az.summary(self.trace, var_names=['d', 'sigma', 'or_speed'], hdi_prob=0.95)
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# 計算各配對的 delta 統計量
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delta_posterior = self.trace.posterior['delta'].values.reshape(-1, num_trials)
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delta_mean = delta_posterior.mean(axis=0)
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delta_std = delta_posterior.std(axis=0)
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# 判斷顯著性(HDI 不包含 0)
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delta_significant = (delta_hdi[:, 0] > 0) | (delta_hdi[:, 1] < 0)
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# 計算控制組和實驗組的勝率 (使用動態變數名稱)
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p_control_posterior = self.trace.posterior[f'p_{control_prefix}'].values.reshape(-1, num_trials)
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p_treatment_posterior = self.trace.posterior[f'p_{treatment_prefix}'].values.reshape(-1, num_trials)
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p_control_mean = p_control_posterior.mean(axis=0)
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p_treatment_mean = p_treatment_posterior.mean(axis=0)
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# 整理結果
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results = {
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'n_trials': num_trials,
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'trial_labels': trial_labels.tolist(),
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# 欄位名稱資訊
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'column_names': {
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'trial_type': self.col_trial_type,
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'control_win': control_win_name,
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'control_total': control_total_name,
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'treatment_win': treatment_win_name,
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'treatment_total': treatment_total_name,
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'control_prefix': control_prefix,
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'treatment_prefix': treatment_prefix
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},
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# 整體效應
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'overall': {
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'd_mean': float(summary.loc['d', 'mean']),
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'or_hdi_high': float(summary.loc['or_speed', 'hdi_97.5%']),
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},
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# 各配對的效應 (使用動態鍵名)
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'by_trial': {
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'delta_mean': delta_mean.tolist(),
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'delta_std': delta_std.tolist(),
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'delta_hdi_low': delta_hdi[:, 0].tolist(),
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'delta_hdi_high': delta_hdi[:, 1].tolist(),
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'delta_significant': delta_significant.tolist(),
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f'p_{control_prefix}_mean': p_control_mean.tolist(),
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f'p_{treatment_prefix}_mean': p_treatment_mean.tolist(),
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},
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# 原始資料
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return results
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except Exception as e:
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raise Exception(f"分析失敗: {str(e)}")
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def _compute_diagnostics(self, summary):
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"""計算收斂診斷指標"""
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try:
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bayesian_utils.py
CHANGED
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overall = results['overall']
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summary_data = {
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'參數': ['d (整體效應)', 'sigma (
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'平均值': [
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f"{overall['d_mean']:.4f}",
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f"{overall['sigma_mean']:.4f}",
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@@ -257,9 +257,10 @@ def create_summary_table(results):
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return pd.DataFrame(summary_data)
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def create_trial_results_table(results):
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"""
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創建各
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Args:
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results: 分析結果字典
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@@ -270,22 +271,28 @@ def create_trial_results_table(results):
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trial_labels = results['trial_labels']
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by_trial = results['by_trial']
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data = results['data']
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trial_data = {
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-
'
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'Delta (平均)': [f"{x:.4f}" for x in by_trial['delta_mean']],
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'Delta (標準差)': [f"{x:.4f}" for x in by_trial['delta_std']],
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'95% HDI 下界': [f"{x:.4f}" for x in by_trial['delta_hdi_low']],
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'95% HDI 上界': [f"{x:.4f}" for x in by_trial['delta_hdi_high']],
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'顯著性': ['★ 顯著' if sig else '不顯著' for sig in by_trial['delta_significant']],
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'
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'
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'
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-
'
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}
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return pd.DataFrame(trial_data)
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def export_results_to_text(results):
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"""
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匯出結果為純文字格式
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@@ -299,6 +306,7 @@ def export_results_to_text(results):
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overall = results['overall']
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interp = results['interpretation']
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diag = results['diagnostics']
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report = f"""
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==============================================
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@@ -306,7 +314,7 @@ def export_results_to_text(results):
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==============================================
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分析時間: {results['timestamp']}
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-
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----------------------------------------------
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1. 整體效應摘要
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@@ -316,7 +324,7 @@ d (整體效應 - Log OR):
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- 標準差: {overall['d_sd']:.4f}
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- 95% HDI: [{overall['d_hdi_low']:.4f}, {overall['d_hdi_high']:.4f}]
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-
sigma (
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- 平均值: {overall['sigma_mean']:.4f}
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- 標準差: {overall['sigma_sd']:.4f}
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- 95% HDI: [{overall['sigma_hdi_low']:.4f}, {overall['sigma_hdi_high']:.4f}]
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@@ -344,23 +352,29 @@ ESS (sigma): {int(diag['ess_sigma']) if diag['ess_sigma'] is not None else 'N/A'
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異質性: {interp['heterogeneity']}
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----------------------------------------------
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4. 各
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----------------------------------------------
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"""
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-
# 添加各
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trial_labels = results['trial_labels']
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by_trial = results['by_trial']
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for i, label in enumerate(trial_labels):
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sig_marker = "★" if by_trial['delta_significant'][i] else " "
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report += f"""
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{sig_marker} {label}:
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Delta (平均): {by_trial['delta_mean'][i]:.4f}
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95% HDI: [{by_trial['delta_hdi_low'][i]:.4f}, {by_trial['delta_hdi_high'][i]:.4f}]
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-
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-
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-
勝率差異: {(by_trial[
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"""
|
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report += """
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@@ -368,6 +382,8 @@ ESS (sigma): {int(diag['ess_sigma']) if diag['ess_sigma'] is not None else 'N/A'
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"""
|
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return report
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def plot_odds_ratio_comparison(results):
|
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"""
|
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| 232 |
overall = results['overall']
|
| 233 |
|
| 234 |
summary_data = {
|
| 235 |
+
'參數': ['d (整體效應)', 'sigma (配對間變異)', 'or_speed (勝算比)'],
|
| 236 |
'平均值': [
|
| 237 |
f"{overall['d_mean']:.4f}",
|
| 238 |
f"{overall['sigma_mean']:.4f}",
|
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|
|
| 257 |
|
| 258 |
return pd.DataFrame(summary_data)
|
| 259 |
|
| 260 |
+
|
| 261 |
def create_trial_results_table(results):
|
| 262 |
"""
|
| 263 |
+
創建各配對結果表格 (使用動態欄位名稱)
|
| 264 |
|
| 265 |
Args:
|
| 266 |
results: 分析結果字典
|
|
|
|
| 271 |
trial_labels = results['trial_labels']
|
| 272 |
by_trial = results['by_trial']
|
| 273 |
data = results['data']
|
| 274 |
+
col_names = results['column_names']
|
| 275 |
+
|
| 276 |
+
# 動態獲取勝率欄位的鍵名
|
| 277 |
+
control_key = f"p_{col_names['control_prefix']}_mean"
|
| 278 |
+
treatment_key = f"p_{col_names['treatment_prefix']}_mean"
|
| 279 |
|
| 280 |
trial_data = {
|
| 281 |
+
'配對': trial_labels,
|
| 282 |
'Delta (平均)': [f"{x:.4f}" for x in by_trial['delta_mean']],
|
| 283 |
'Delta (標準差)': [f"{x:.4f}" for x in by_trial['delta_std']],
|
| 284 |
'95% HDI 下界': [f"{x:.4f}" for x in by_trial['delta_hdi_low']],
|
| 285 |
'95% HDI 上界': [f"{x:.4f}" for x in by_trial['delta_hdi_high']],
|
| 286 |
'顯著性': ['★ 顯著' if sig else '不顯著' for sig in by_trial['delta_significant']],
|
| 287 |
+
f"{col_names['control_prefix']}勝率": [f"{x:.2%}" for x in by_trial[control_key]],
|
| 288 |
+
f"{col_names['treatment_prefix']}勝率": [f"{x:.2%}" for x in by_trial[treatment_key]],
|
| 289 |
+
f"{col_names['control_prefix']} (勝/總)": [f"{d[col_names['control_win']]}/{d[col_names['control_total']]}" for d in data],
|
| 290 |
+
f"{col_names['treatment_prefix']} (勝/總)": [f"{d[col_names['treatment_win']]}/{d[col_names['treatment_total']]}" for d in data]
|
| 291 |
}
|
| 292 |
|
| 293 |
return pd.DataFrame(trial_data)
|
| 294 |
|
| 295 |
+
|
| 296 |
def export_results_to_text(results):
|
| 297 |
"""
|
| 298 |
匯出結果為純文字格式
|
|
|
|
| 306 |
overall = results['overall']
|
| 307 |
interp = results['interpretation']
|
| 308 |
diag = results['diagnostics']
|
| 309 |
+
col_names = results['column_names']
|
| 310 |
|
| 311 |
report = f"""
|
| 312 |
==============================================
|
|
|
|
| 314 |
==============================================
|
| 315 |
|
| 316 |
分析時間: {results['timestamp']}
|
| 317 |
+
配對數量: {results['n_trials']}
|
| 318 |
|
| 319 |
----------------------------------------------
|
| 320 |
1. 整體效應摘要
|
|
|
|
| 324 |
- 標準差: {overall['d_sd']:.4f}
|
| 325 |
- 95% HDI: [{overall['d_hdi_low']:.4f}, {overall['d_hdi_high']:.4f}]
|
| 326 |
|
| 327 |
+
sigma (配對間變異):
|
| 328 |
- 平均值: {overall['sigma_mean']:.4f}
|
| 329 |
- 標準差: {overall['sigma_sd']:.4f}
|
| 330 |
- 95% HDI: [{overall['sigma_hdi_low']:.4f}, {overall['sigma_hdi_high']:.4f}]
|
|
|
|
| 352 |
異質性: {interp['heterogeneity']}
|
| 353 |
|
| 354 |
----------------------------------------------
|
| 355 |
+
4. 各配對詳細結果
|
| 356 |
----------------------------------------------
|
| 357 |
"""
|
| 358 |
|
| 359 |
+
# 添加各配對的詳細資訊
|
| 360 |
trial_labels = results['trial_labels']
|
| 361 |
by_trial = results['by_trial']
|
| 362 |
|
| 363 |
+
# 動態獲取鍵名
|
| 364 |
+
control_key = f"p_{col_names['control_prefix']}_mean"
|
| 365 |
+
treatment_key = f"p_{col_names['treatment_prefix']}_mean"
|
| 366 |
+
control_label = col_names['control_prefix'].capitalize()
|
| 367 |
+
treatment_label = col_names['treatment_prefix'].capitalize()
|
| 368 |
+
|
| 369 |
for i, label in enumerate(trial_labels):
|
| 370 |
sig_marker = "★" if by_trial['delta_significant'][i] else " "
|
| 371 |
report += f"""
|
| 372 |
{sig_marker} {label}:
|
| 373 |
Delta (平均): {by_trial['delta_mean'][i]:.4f}
|
| 374 |
95% HDI: [{by_trial['delta_hdi_low'][i]:.4f}, {by_trial['delta_hdi_high'][i]:.4f}]
|
| 375 |
+
{control_label}勝率: {by_trial[control_key][i]:.2%}
|
| 376 |
+
{treatment_label}勝率: {by_trial[treatment_key][i]:.2%}
|
| 377 |
+
勝率差異: {(by_trial[treatment_key][i] - by_trial[control_key][i]):.2%}
|
| 378 |
"""
|
| 379 |
|
| 380 |
report += """
|
|
|
|
| 382 |
"""
|
| 383 |
|
| 384 |
return report
|
| 385 |
+
|
| 386 |
+
|
| 387 |
|
| 388 |
def plot_odds_ratio_comparison(results):
|
| 389 |
"""
|