Update

README.md

@@ -12,7 +12,10 @@ short_description: Agent that helps you with natural treatment
 tags:
 - agents
 - web-search
+- plants
 - medical
+thumbnail: >-
+  https://huggingface.co/spaces/XMMR12/HyBio-Agent/resolve/main/thumbnail.png
 ---
 # 🌿 HyBio Agent - Natural Treatment Assistant
 

app.py

@@ -1,581 +1,583 @@
-from typing import List, Tuple, Dict, Any, Generator
-import sqlite3 
-import urllib
-import requests
-import os
-import gradio as gr
-from smolagents import tool
-import time
-
-#specialtoken=os.getenv("SPECIALTOKEN")+"deepseek-r1-0528"
-specialtoken=os.getenv("SPECIALTOKEN")+"openai"#"openai-large"#"openai-roblox"
-fasttoken=os.getenv("SPECIALTOKEN")+"models/"+"openai-fast"
-
-#unused for getting all symptoms from plants db
-def get_all_treatable_conditions()->List:
-    #Gets all the symptoms:
-    conn = sqlite3.connect('plants.db')
-    # Create a cursor object
-    cursor = conn.cursor()
-    # Execute a query to retrieve data
-    cursor.execute("SELECT treatable_conditions FROM 'plants'")
-    # Fetch all results
-    rows = cursor.fetchall()
-    # Print the results
-    treatable_conditions=[]
-    for row in rows:
-        treatable_conditions.append(row)
-    # Close the connection
-    conn.close()
-    return treatable_conditions
-
-#Unused for writing db
-def write_symptoms_into_db(data_list):
-    """Initialize SQLite database"""
-    try:
-        conn = sqlite3.connect('plants.db')
-        c = conn.cursor()
-        c.execute('''CREATE TABLE IF NOT EXISTS symptoms (name TEXT)''')
-        conn.commit()
-        for each in data_list:
-            insert_sql = f'''INSERT INTO 'symptoms' (name) VALUES ("{each}")'''
-            c.execute(insert_sql)
-            conn.commit()
-        print("Database created successfully!")
-        conn.close()
-    except sqlite3.Error as e:
-        print(f"An error occurred: {e}")
-
-#@tool
-def get_unique_symptoms(list_text:List[str])->List[str]:
-    """Processes and deduplicates symptom descriptions into a normalized list of unique symptoms.
-
-    Performs comprehensive text processing to:
-    - Extract individual symptoms from complex descriptions
-    - Normalize formatting (removes common connecting words and punctuation)
-    - Deduplicate symptoms while preserving original meaning
-    - Handle multiple input formats (strings and tuples)
-
-    Args:
-        list_text: List of symptom descriptions in various formats.
-                   Each element can be:
-                   - String: "fever and headache" 
-                   - Tuple: ("been dizzy and nauseous",)
-                   Example: ["fatigue, nausea", "headache and fever"]
-
-    Returns:
-        List of unique, alphabetically sorted symptom terms in lowercase.
-        Returns empty list if:
-        - Input is empty
-        - No valid strings found
-        Example: ['bleed', 'fever', 'headache']
-
-    Processing Details:
-        1. Text normalization:
-           - Removes connecting words ("and", "also", "like", etc.)
-           - Replaces punctuation with spaces
-           - Converts to lowercase
-        2. Special cases:
-           - Handles tuple inputs by extracting first element
-           - Skips non-string/non-tuple elements with warning
-        3. Deduplication:
-           - Uses set operations for uniqueness
-           - Returns sorted list for consistency
-
-    Examples:
-        >>> get_unique_symptoms(["fever and headache", "bleed"])
-        ['bleed', 'fever', 'headache']
-
-        >>> get_unique_symptoms([("been dizzy",), "nausea"])
-        ['dizzy', 'nausea']
-
-        >>> get_unique_symptoms([123, None])
-        No Correct DataType
-        []
-
-    Edge Cases:
-        - Empty strings are filtered out
-        - Single-word symptoms preserved
-        - Mixed punctuation handled
-        - Warning printed for invalid types
-    """
-
-    all_symptoms = []
-    
-    for text in list_text:
-        # Handle potential errors in input text.  Crucial for robustness.
-        if type(text)==tuple:
-            text=text[0]
-            symptoms = text.replace(" and ", " ").replace(" been ", " ").replace(" also ", " ").replace(" like ", " ").replace(" due ", " ").replace(" a ", " ").replace(" as ", " ").replace(" an ", " ").replace(",", " ").replace(".", " ").replace(";", " ").replace("(", " ").replace(")", " ").split()
-            symptoms = [symptom.strip() for symptom in symptoms if symptom.strip()]  # Remove extra whitespace and empty strings
-            all_symptoms.extend(symptoms)
-        elif type(text)==str and len(text)>1:
-            symptoms = text.replace(" and ", " ").replace(" been ", " ").replace(" also ", " ").replace(" like ", " ").replace(" due ", " ").replace(" a ", " ").replace(" as ", " ").replace(" an ", " ").replace(",", " ").replace(".", " ").replace(";", " ").replace("(", " ").replace(")", " ").split()
-            symptoms = [symptom.strip() for symptom in symptoms if symptom.strip()]  # Remove extra whitespace and empty strings
-            all_symptoms.extend(symptoms)
-        else:
-            print ("No Correct DataType or 1 charater text O.o")
-        #if not isinstance(text, str) or not text:
-        #continue
-
-    unique_symptoms = sorted(list(set(all_symptoms)))  # Use set to get unique items, then sort for consistency
-    
-    return unique_symptoms
-
-#@tool
-def lookup_symptom_and_plants(symptom_input:str)->List:
-    """Search for medicinal plants that can treat a given symptom by querying a SQLite database.
-    
-    This function performs a case-insensitive search in the database for:
-    1. First looking for an exact or partial match of the symptom
-    2. If not found, searches for individual words from the symptom input
-    3. Returns all plants that list the matched symptom in their treatable conditions
-    
-    Args:
-        symptom_input (str): The symptom to search for (e.g., "headache", "stomach pain").
-                            Can be a single symptom or multiple words. Leading/trailing
-                            whitespace is automatically trimmed.
-
-    Returns:
-        List[dict]: A list of plant dictionaries containing all columns from the 'plants' table
-                   where the symptom appears in treatable_conditions. Each dictionary represents
-                   one plant with column names as keys. Returns empty list if:
-                   - Symptom not found
-                   - No plants treat the symptom
-                   - Database error occurs
-
-    Raises:
-        sqlite3.Error: If there's a database connection or query error (handled internally,
-                      returns empty list but prints error to console)
-
-    Notes:
-        - The database connection is opened and closed within this function
-        - Uses LIKE queries with wildcards for flexible matching
-        - Treatable conditions are expected to be stored as comma-separated values
-        - Case-insensitive matching is performed by converting to lowercase
-        - The function will attempt to match individual words if full phrase not found
-
-    Example:
-        >>> lookup_symptom_and_plants("headache")
-        [{'name': 'Neem', 'scientific_name': 'Azadirachta indica', 'alternate_names': 'Indian Lilac, Margosa Tree', 'description': 'Neem is a tropical evergreen tree known for its extensive medicinal properties. Native to the Indian subcontinent, it has been used for thousands of years in traditional medicine systems like Ayurveda and Unani. Various parts of the tree including fruits, seeds, oil, leaves, roots, and bark have therapeutic benefits.', 'plant_family': 'Meliaceae', 'origin': 'Indian subcontinent', 'growth_habitat': 'Tropical and subtropical regions, often found in dry and arid soils', 'active_components': 'Azadirachtin, Nimbin, Nimbidin, Sodium nimbidate, Quercetin', 'treatable_conditions': 'Skin diseases, infections, fever, diabetes, dental issues, inflammation, malaria, digestive disorders', 'preparation_methods': 'Leaves and bark can be dried and powdered; oil extracted from seeds; decoctions and infusions made from leaves or bark', 'dosage': 'Varies depending on preparation and condition; oils generally used topically, leaf powder doses range from 500 mg to 2 grams daily when taken orally', 'duration': 'Treatment duration depends on condition, often several weeks to months for chronic ailments', 'contraindications': 'Pregnant and breastfeeding women advised to avoid internal consumption; caution in people with liver or kidney disease', 'side_effects': 'Possible allergic reactions, nausea, diarrhea if consumed in excess', 'interactions': 'May interact with blood sugar lowering medications and immunosuppressants', 'part_used': 'Leaves, seeds, bark, roots, oil, fruits', 'harvesting_time': 'Leaves and fruits commonly harvested in summer; seeds collected when fruits mature', 'storage_tips': 'Store dried parts in airtight containers away from direct sunlight; oils kept in cool, dark places', 'images': '', 'related_videos': '', 'sources': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3769010/, https://www.who.int/medicines/areas/traditional/overview/en/'}]
-        
-        >>> lookup_symptom_and_plants("unknown symptom")
-        []
-    """
-    symptom_lower = symptom_input.strip().lower()
-    try:
-        conn = sqlite3.connect('plants.db')
-        conn.row_factory = sqlite3.Row
-        c = conn.cursor()
-
-        # Check if the symptom exists in symptoms table (case-insensitive)
-        c.execute(f'''SELECT name FROM "symptoms" WHERE LOWER("name") LIKE "%{symptom_lower}%"''')
-        result = c.fetchone()
-        #if result:
-        #    result=result[0]
-
-        if not result:
-            #get any 1 symptom only in case the text is not showing.
-            symptoms=symptom_lower.split(" ")
-            for each in symptoms:
-                c.execute(f'''SELECT name FROM "symptoms" WHERE LOWER("name") LIKE "%{each}%"''')
-                result = c.fetchone()
-                if result:
-                    print(f"Symptom '{symptom_input}' finally found in the database.")
-                    #result=result[0]
-                    symptom_lower=each
-                    break
-            if not result:
-                print(f"Symptom '{symptom_input}' not found in the database.")
-                conn.close()
-                return []
-
-        # If symptom exists, search in plants table for related plants
-        # Assuming 'TreatableConditions' is a comma-separated string
-        query = f"""SELECT * FROM plants WHERE LOWER(treatable_conditions) LIKE "%{symptom_lower}%" """
-        c.execute(query)
-        plants_rows = c.fetchall()
-
-        plants_list = []
-        for row in plants_rows:
-            # Convert row to dict for easier handling
-            plant_dict = {key: row[key] for key in row.keys()}
-            plants_list.append(plant_dict)
-
-        conn.close()
-        return plants_list
-
-    except sqlite3.Error as e:
-        print(f"Database error: {e}")
-        return []
-
-
-#@tool
-def analyze_symptoms_from_text_ai(user_input:str)->str:
-    """Analyze user-provided text to extract medical symptoms in CSV format.
-    
-    This function sends the user's text description to an AI service which identifies
-    and returns potential medical symptoms in a comma-separated string format.
-    
-    Args:
-        user_input (str): The text containing symptom descriptions to be analyzed.
-                          Example: "I feel some pain in head and I feel dizzy"
-        
-    Returns:
-        str: A comma-separated string of identified symptoms.
-             Example: "pain in head,dizzy"
-             
-    Note:
-        This function requires an internet connection as it makes an API call to
-        an external AI service. The service URL is expected to be available in
-        the 'fasttoken' variable.
-        
-    Example:
-        >>> analyze_symptoms_from_text_ai("I have a headache and nausea")
-        'headache,nausea'
-    """
-    #user_input="""i feel some pain in head and i feel dizzy""" #user input
-    #text_symptoms='pain in head,dizzy' #returned output
-    prompt='''Analyze this text for possible symptoms and list them in only csv format by comma in 1 line from the following text : """{user_input}"""'''
-    prompt=urllib.parse.quote(prompt)
-    response = requests.get(f"{fasttoken}/{prompt}")
-    text_symptoms=response.text
-    
-    return text_symptoms
- 
-#@tool
-def full_treatment_answer_ai(user_input:str)->str:
-    """
-    Searches a database for treatable conditions based on user-input and getting from it symptoms and plants needed for the treatment.
-
-    Args:
-        user_input (str): A string representing the user's full symptoms.
-
-    Returns:
-        str: Ready Full treatment plan with plants answer about the symptoms  (and with side effects of the plants if available).
-    """
-    all_related_plants=[]
-    """
-    old Return:
-        A list of dictionaries, where each dictionary represents a treatable condition
-        and its associated symptoms. Returns an empty list if no matching conditions are found.
-        Returns None if there's an error connecting to or querying the database.
-    """
-    #EXAMPLE:
-    '''[{'name': 'Neem',
-     'scientific_name': 'Azadirachta indica',
-     'alternate_names': 'Indian Lilac, Margosa Tree',
-     'description': 'Neem is a tropical evergreen tree known for its extensive medicinal properties. Native to the Indian subcontinent, it has been used for thousands of years in traditional medicine systems like Ayurveda and Unani. Various parts of the tree including fruits, seeds, oil, leaves, roots, and bark have therapeutic benefits.',
-     'plant_family': 'Meliaceae',
-     'origin': 'Indian subcontinent',
-     'growth_habitat': 'Tropical and subtropical regions, often found in dry and arid soils',
-     'active_components': 'Azadirachtin, Nimbin, Nimbidin, Sodium nimbidate, Quercetin',
-     'treatable_conditions': 'Skin diseases, infections, fever, diabetes, dental issues, inflammation, malaria, digestive disorders',
-     'preparation_methods': 'Leaves and bark can be dried and powdered; oil extracted from seeds; decoctions and infusions made from leaves or bark',
-     'dosage': 'Varies depending on preparation and condition; oils generally used topically, leaf powder doses range from 500 mg to 2 grams daily when taken orally',
-     'duration': 'Treatment duration depends on condition, often several weeks to months for chronic ailments',
-     'contraindications': 'Pregnant and breastfeeding women advised to avoid internal consumption; caution in people with liver or kidney disease',
-     'side_effects': 'Possible allergic reactions, nausea, diarrhea if consumed in excess',
-     'interactions': 'May interact with blood sugar lowering medications and immunosuppressants',
-     'part_used': 'Leaves, seeds, bark, roots, oil, fruits',
-     'harvesting_time': 'Leaves and fruits commonly harvested in summer; seeds collected when fruits mature',
-     'storage_tips': 'Store dried parts in airtight containers away from direct sunlight; oils kept in cool, dark places',
-     'images': '',
-     'related_videos': '',
-     'sources': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3769010/, https://www.who.int/medicines/areas/traditional/overview/en/'}]'''
-    text_symptoms=user_input#analyze_symptoms_from_text_ai(user_input)
-    symptoms_list=text_symptoms.split(",")
-    symptoms=get_unique_symptoms(symptoms_list)
-    
-    for symptom in symptoms: 
-        related_plants = lookup_symptom_and_plants(symptom)
-        for each in related_plants:
-            all_related_plants.append(each)
-    plants_info=""
-    if len(all_related_plants)>0:
-        for each in all_related_plants[:6]: #GET top 7 if available
-            plants_info+="""Here are some plants that might be relevant:\nPlant:{each['name']}\n{each['description']}\nCures:{each['treatable_conditions']}.\n """
-    else:
-        plants_info="No Plants found , please get useful plants from anywhere or any other sources."
-    prompt=f"""I have these symptoms: {",".join(symptoms)}. 
-
-{plants_info}
-
-Please analyze my symptoms and recommend the most appropriate plant remedy. 
-Consider the symptoms, when to use each plant, dosage, and how to use it.
-Provide your recommendation in this format:
-
-**Recommended Plant**: [plant name]
-**Reason**: [why this plant is good for these symptoms]
-**Dosage**: [recommended dosage]
-**Instructions**: [how to use it]
-**Image**: [mention the image is available if applicable]
-
-If multiple plants could work well, you may recommend up to 3 options."""
-
-    #filter the names and description, treatments only and send it in post to AI
-    prompt=urllib.parse.quote(prompt)
-    response = requests.get(f"{fasttoken}/{prompt}")
-    final_result=response.text
-    
-    #Get the answer and send it to user then post all data for each plant in a good form for user to view
-
-    if len(all_related_plants)>0:
-        final_result+="\n---\nMore Details for Plants:\n"
-        for each in all_related_plants[:4]:
-            final_result+=f"""\n**Plant Name**: {each['name']}
-**Other Names**: {each['scientific_name']} , {each['alternate_names']}
-**Description**: {each['description']}
-**Plant Family**: {each['plant_family']}, **Origin**: {each['origin']}
-**Treatment Conditions**: {each['treatable_conditions']}
-**Preparation Methods**: {each['preparation_methods']}
-**Side Effects**: {each['side_effects']}    
-**Storage Tips**: {each['storage_tips']}
-**Info. Sources**: {each['sources']}
-"""
-    return final_result
-
-#example:
-# user_input="""i feel some pain in head and i feel dizzy""" #user input
-# prompt='''Analyze the possible symptoms and list them in only csv format by comma in 1 line,from the following text : """{user_input}"""'''
-# output='pain in head,dizzy'
-# symptoms=output.split(",")
-# get_unique_symptoms(symptoms)
-
-
-#Filter all conditions:
-#all_treatment_conditions=get_all_treatable_conditions()
-#unique_symptoms=get_unique_symptoms(all_treatment_conditions)
-#write_symptoms_into_db(unique_symptoms)
-#related_plants = lookup_symptom_and_plants("fever")
-
-'''
-user_input = "fever"
-related_plants = lookup_symptom_and_plants(user_input)
-if related_plants:
-    print(f"Plants related to '{user_input}':")
-    for plant in related_plants:
-        print(f"- {plant['name']}")
-else:
-    print(f"No plants found for symptom '{user_input}'.")
-'''
-def is_symtoms_intext_ai(text_input:str)->str: #used instead of: analyze_symptoms_from_text_ai()
-    """Gives Symptoms or "" if no symptoms """
-    prompt='''Analyze this text for possible symptoms and list them in only csv format by comma in 1 line from the following text : """{user_input}"""
-    ---
-    Return "" , IF NO SYMTPOMS OR DIESEASE IN THE TEXT
-    '''
-    prompt=urllib.parse.quote(prompt)
-    response = requests.get(f"{fasttoken}/{prompt}")
-    response_text=response.text
-    if len(response_text)>2:
-        if "error" not in response_text.lower():
-            return response_text
-    return ""
-
-class BotanistAssistant:
-    def __init__(self, api_endpoint: str):
-        self.api_endpoint = api_endpoint
-        self.system_message = "You are a botanist assistant that extracts and structures information about medicinal plants."
-        
-    def _build_chat_history(self, history: List[Tuple[str, str]]) -> List[Dict[str, str]]:
-        """Formats chat history into API-compatible message format."""
-        messages = [{"role": "system", "content": self.system_message}]
-        for user_msg, bot_msg in history:
-            if user_msg:
-                messages.append({"role": "user", "content": user_msg})
-            if bot_msg:
-                messages.append({"role": "assistant", "content": bot_msg})
-        return messages
-    
-    def _get_tools_schema(self) -> List[Dict[str, Any]]:
-        """Returns the complete tools schema for plant medicine analysis."""
-        return [
-        {
-            "name": "get_unique_symptoms",
-            "description": "Extracts and deduplicates symptoms from text input. Handles natural language processing to identify individual symptoms from complex descriptions.",
-            "api": {
-                "name": "get_unique_symptoms",
-                "parameters": {
-                    "type": "object",
-                    "properties": {
-                        "list_text": {
-                            "type": "array",
-                            "items": {"type": "string"},
-                            "description": "List of symptom descriptions (strings or tuples)"
-                        }
-                    },
-                    "required": ["list_text"]
-                }
-            }
-        },
-        {
-            "name": "lookup_symptom_and_plants",
-            "description": "Finds medicinal plants associated with specific symptoms from the database. Returns matching plants with their treatment properties.",
-            "api": {
-                "name": "lookup_symptom_and_plants",
-                "parameters": {
-                    "type": "object",
-                    "properties": {
-                        "symptom_input": {
-                            "type": "string",
-                            "description": "Individual symptom to search for plant treatments"
-                        }
-                    },
-                    "required": ["symptom_input"]
-                }
-            }
-        },
-        {
-            "name": "analyze_symptoms_from_text_ai",
-            "description": "AI-powered symptom analysis that interprets natural language descriptions of health conditions and extracts medically relevant symptoms.",
-            "api": {
-                "name": "analyze_symptoms_from_text_ai",
-                "parameters": {
-                    "type": "object",
-                    "properties": {
-                        "text_input": {
-                            "type": "string",
-                            "description": "Raw text description of health condition"
-                        }
-                    },
-                    "required": ["text_input"]
-                }
-            }
-        },
-        {
-            "name": "search_for_treatment_answer_ai",
-            "description": "Comprehensive treatment finder that takes symptoms, analyzes them, and returns complete plant-based treatment plans with dosage instructions.",
-            "api": {
-                "name": "search_for_treatment_answer_ai",
-                "parameters": {
-                    "type": "object",
-                    "properties": {
-                        "list_symptoms": {
-                            "type": "array",
-                            "items": {"type": "string"},
-                            "description": "List of identified symptoms"
-                        }
-                    },
-                    "required": ["list_symptoms"]
-                }
-            }
-        }
-    ]
-    
-    def _call_assistant_api(self, messages: List[Dict[str, str]]) -> Dict[str, Any]:
-        """Makes the API call to the assistant service."""
-        payload = {
-            "model": "openai",
-            "messages": messages,
-            #"tools": self._get_tools_schema(), TOOLS REMOVED 
-            #"tool_choice": "auto" #TODO fix tools 
-        }
-        
-        try:
-            response = requests.post(
-                self.api_endpoint,
-                json=payload,
-                headers={"Content-Type": "application/json"},
-                timeout=30  # 30-second timeout
-            )
-            response.raise_for_status()
-            return response.json() #-_-
-        except requests.exceptions.RequestException as e:
-            print(f"API request failed: {str(e)}")
-            return {"error": str(e)}
-    
-    def respond(
-        self,
-        message: str,
-        history: List[Tuple[str, str]],
-        system_message: str = None
-    ) -> Generator[str, None, None]:
-        """Handles the chat response generation."""
-        # Update system message if provided
-        if system_message:
-            self.system_message = system_message
-            
-        # Build API payload
-        messages = self._build_chat_history(history)
-        messages.append({"role": "user", "content": message})
-        
-        
-        # Get API response
-        api_response = self._call_assistant_api(messages)
-        
-        # Process response
-        if "error" in api_response:
-            yield "Error: Could not connect to the assistant service. Please try again later."
-            return
-        
-        
-        treatment_response=""
-        symtoms_intext=is_symtoms_intext_ai(message)
-        if symtoms_intext:
-            time.sleep(1.6)
-            treatment_response=full_treatment_answer_ai(symtoms_intext)
-            #yield treatment_response
-        
-        if len(treatment_response):
-            treatment_response="\n**I have found that this may help you alot:**\n"+treatment_response
-            yield treatment_response
-        
-        # Get treatment information
-        #treatment_response = search_for_treatment_answer_ai(message)
-        #yield treatment_response  # First yield the treatment info
-        
-        # Stream additional assistant responses if available
-        if "choices" in api_response:
-            for choice in api_response["choices"]:
-                if "message" in choice and "content" in choice["message"]:
-                    yield choice["message"]["content"].split("**Sponsor**")[0].split("Sponsor")[0]
-
-def create_app(api_endpoint: str) -> gr.Blocks:
-    """Creates and configures the Gradio interface."""
-    assistant = BotanistAssistant(api_endpoint)
-    
-    with gr.Blocks(title="Botanist Assistant", theme=gr.themes.Soft()) as demo:
-        gr.Markdown("# 🌿 Natural Medical Assistant")
-        gr.Markdown("Describe your symptoms to get natural plant-based treatment recommendations")
-        
-        with gr.Row():
-            with gr.Column(scale=3):
-                chat = gr.ChatInterface(
-                    assistant.respond,
-                    additional_inputs=[
-                        gr.Textbox(
-                            value=assistant.system_message,
-                            label="System Role",
-                            interactive=True
-                        )
-                    ]
-                )
-            with gr.Column(scale=1):
-                gr.Markdown("### Common Symptoms")
-                gr.Examples(
-                    examples=[
-                        ["I have headache and fever"],
-                        ["got nausea, and injury caused bleeding"],
-                        ["I feel insomnia, and anxiety"]
-                    ],
-                    inputs=chat.textbox,
-                    label="Try these examples"
-                )
-                
-        gr.Markdown("---")
-        gr.Markdown("""> Note: Recommendations can work as real cure treatment but you can consider it as informational purposes only.
-Also You can consult a Natrual healthcare professional before use.""")
-
-    
-    return demo
-
-if __name__ == "__main__":
-    API_ENDPOINT = specialtoken # Replace with your actual endpoint
-    app = create_app(API_ENDPOINT)
-    app.launch(
-        server_name="0.0.0.0",
-        server_port=7860,
-        share=False,
-        favicon_path="🌿"  # Optional: Add path to plant icon
+from typing import List, Tuple, Dict, Any, Generator
+import sqlite3 
+import urllib
+import requests
+import os
+import gradio as gr
+from smolagents import tool
+import time
+
+#specialtoken=os.getenv("SPECIALTOKEN")+"deepseek-r1-0528"
+specialtoken=os.getenv("SPECIALTOKEN")+"openai"#"openai-large"#"openai-roblox"
+fasttoken=os.getenv("SPECIALTOKEN")+"models/"+"openai-fast"
+
+#unused for getting all symptoms from plants db
+def get_all_treatable_conditions()->List:
+    #Gets all the symptoms:
+    conn = sqlite3.connect('plants.db')
+    # Create a cursor object
+    cursor = conn.cursor()
+    # Execute a query to retrieve data
+    cursor.execute("SELECT treatable_conditions FROM 'plants'")
+    # Fetch all results
+    rows = cursor.fetchall()
+    # Print the results
+    treatable_conditions=[]
+    for row in rows:
+        treatable_conditions.append(row)
+    # Close the connection
+    conn.close()
+    return treatable_conditions
+
+#Unused for writing db
+def write_symptoms_into_db(data_list):
+    """Initialize SQLite database"""
+    try:
+        conn = sqlite3.connect('plants.db')
+        c = conn.cursor()
+        c.execute('''CREATE TABLE IF NOT EXISTS symptoms (name TEXT)''')
+        conn.commit()
+        for each in data_list:
+            insert_sql = f'''INSERT INTO 'symptoms' (name) VALUES ("{each}")'''
+            c.execute(insert_sql)
+            conn.commit()
+        print("Database created successfully!")
+        conn.close()
+    except sqlite3.Error as e:
+        print(f"An error occurred: {e}")
+
+#@tool
+def get_unique_symptoms(list_text:List[str])->List[str]:
+    """Processes and deduplicates symptom descriptions into a normalized list of unique symptoms.
+
+    Performs comprehensive text processing to:
+    - Extract individual symptoms from complex descriptions
+    - Normalize formatting (removes common connecting words and punctuation)
+    - Deduplicate symptoms while preserving original meaning
+    - Handle multiple input formats (strings and tuples)
+
+    Args:
+        list_text: List of symptom descriptions in various formats.
+                   Each element can be:
+                   - String: "fever and headache" 
+                   - Tuple: ("been dizzy and nauseous",)
+                   Example: ["fatigue, nausea", "headache and fever"]
+
+    Returns:
+        List of unique, alphabetically sorted symptom terms in lowercase.
+        Returns empty list if:
+        - Input is empty
+        - No valid strings found
+        Example: ['bleed', 'fever', 'headache']
+
+    Processing Details:
+        1. Text normalization:
+           - Removes connecting words ("and", "also", "like", etc.)
+           - Replaces punctuation with spaces
+           - Converts to lowercase
+        2. Special cases:
+           - Handles tuple inputs by extracting first element
+           - Skips non-string/non-tuple elements with warning
+        3. Deduplication:
+           - Uses set operations for uniqueness
+           - Returns sorted list for consistency
+
+    Examples:
+        >>> get_unique_symptoms(["fever and headache", "bleed"])
+        ['bleed', 'fever', 'headache']
+
+        >>> get_unique_symptoms([("been dizzy",), "nausea"])
+        ['dizzy', 'nausea']
+
+        >>> get_unique_symptoms([123, None])
+        No Correct DataType
+        []
+
+    Edge Cases:
+        - Empty strings are filtered out
+        - Single-word symptoms preserved
+        - Mixed punctuation handled
+        - Warning printed for invalid types
+    """
+
+    all_symptoms = []
+    
+    for text in list_text:
+        # Handle potential errors in input text.  Crucial for robustness.
+        if type(text)==tuple:
+            text=text[0]
+            symptoms = text.replace(" and ", " ").replace(" been ", " ").replace(" also ", " ").replace(" like ", " ").replace(" due ", " ").replace(" a ", " ").replace(" as ", " ").replace(" an ", " ").replace(",", " ").replace(".", " ").replace(";", " ").replace("(", " ").replace(")", " ").split()
+            symptoms = [symptom.strip() for symptom in symptoms if symptom.strip()]  # Remove extra whitespace and empty strings
+            all_symptoms.extend(symptoms)
+        elif type(text)==str and len(text)>1:
+            symptoms = text.replace(" and ", " ").replace(" been ", " ").replace(" also ", " ").replace(" like ", " ").replace(" due ", " ").replace(" a ", " ").replace(" as ", " ").replace(" an ", " ").replace(",", " ").replace(".", " ").replace(";", " ").replace("(", " ").replace(")", " ").split()
+            symptoms = [symptom.strip() for symptom in symptoms if symptom.strip()]  # Remove extra whitespace and empty strings
+            all_symptoms.extend(symptoms)
+        else:
+            print ("No Correct DataType or 1 charater text O.o")
+        #if not isinstance(text, str) or not text:
+        #continue
+
+    unique_symptoms = sorted(list(set(all_symptoms)))  # Use set to get unique items, then sort for consistency
+    
+    return unique_symptoms
+
+#@tool
+def lookup_symptom_and_plants(symptom_input:str)->List:
+    """Search for medicinal plants that can treat a given symptom by querying a SQLite database.
+    
+    This function performs a case-insensitive search in the database for:
+    1. First looking for an exact or partial match of the symptom
+    2. If not found, searches for individual words from the symptom input
+    3. Returns all plants that list the matched symptom in their treatable conditions
+    
+    Args:
+        symptom_input (str): The symptom to search for (e.g., "headache", "stomach pain").
+                            Can be a single symptom or multiple words. Leading/trailing
+                            whitespace is automatically trimmed.
+
+    Returns:
+        List[dict]: A list of plant dictionaries containing all columns from the 'plants' table
+                   where the symptom appears in treatable_conditions. Each dictionary represents
+                   one plant with column names as keys. Returns empty list if:
+                   - Symptom not found
+                   - No plants treat the symptom
+                   - Database error occurs
+
+    Raises:
+        sqlite3.Error: If there's a database connection or query error (handled internally,
+                      returns empty list but prints error to console)
+
+    Notes:
+        - The database connection is opened and closed within this function
+        - Uses LIKE queries with wildcards for flexible matching
+        - Treatable conditions are expected to be stored as comma-separated values
+        - Case-insensitive matching is performed by converting to lowercase
+        - The function will attempt to match individual words if full phrase not found
+
+    Example:
+        >>> lookup_symptom_and_plants("headache")
+        [{'name': 'Neem', 'scientific_name': 'Azadirachta indica', 'alternate_names': 'Indian Lilac, Margosa Tree', 'description': 'Neem is a tropical evergreen tree known for its extensive medicinal properties. Native to the Indian subcontinent, it has been used for thousands of years in traditional medicine systems like Ayurveda and Unani. Various parts of the tree including fruits, seeds, oil, leaves, roots, and bark have therapeutic benefits.', 'plant_family': 'Meliaceae', 'origin': 'Indian subcontinent', 'growth_habitat': 'Tropical and subtropical regions, often found in dry and arid soils', 'active_components': 'Azadirachtin, Nimbin, Nimbidin, Sodium nimbidate, Quercetin', 'treatable_conditions': 'Skin diseases, infections, fever, diabetes, dental issues, inflammation, malaria, digestive disorders', 'preparation_methods': 'Leaves and bark can be dried and powdered; oil extracted from seeds; decoctions and infusions made from leaves or bark', 'dosage': 'Varies depending on preparation and condition; oils generally used topically, leaf powder doses range from 500 mg to 2 grams daily when taken orally', 'duration': 'Treatment duration depends on condition, often several weeks to months for chronic ailments', 'contraindications': 'Pregnant and breastfeeding women advised to avoid internal consumption; caution in people with liver or kidney disease', 'side_effects': 'Possible allergic reactions, nausea, diarrhea if consumed in excess', 'interactions': 'May interact with blood sugar lowering medications and immunosuppressants', 'part_used': 'Leaves, seeds, bark, roots, oil, fruits', 'harvesting_time': 'Leaves and fruits commonly harvested in summer; seeds collected when fruits mature', 'storage_tips': 'Store dried parts in airtight containers away from direct sunlight; oils kept in cool, dark places', 'images': '', 'related_videos': '', 'sources': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3769010/, https://www.who.int/medicines/areas/traditional/overview/en/'}]
+        
+        >>> lookup_symptom_and_plants("unknown symptom")
+        []
+    """
+    symptom_lower = symptom_input.strip().lower()
+    try:
+        conn = sqlite3.connect('plants.db')
+        conn.row_factory = sqlite3.Row
+        c = conn.cursor()
+
+        # Check if the symptom exists in symptoms table (case-insensitive)
+        c.execute(f'''SELECT name FROM "symptoms" WHERE LOWER("name") LIKE "%{symptom_lower}%"''')
+        result = c.fetchone()
+        #if result:
+        #    result=result[0]
+
+        if not result:
+            #get any 1 symptom only in case the text is not showing.
+            symptoms=symptom_lower.split(" ")
+            for each in symptoms:
+                c.execute(f'''SELECT name FROM "symptoms" WHERE LOWER("name") LIKE "%{each}%"''')
+                result = c.fetchone()
+                if result:
+                    print(f"Symptom '{symptom_input}' finally found in the database.")
+                    #result=result[0]
+                    symptom_lower=each
+                    break
+            if not result:
+                print(f"Symptom '{symptom_input}' not found in the database.")
+                conn.close()
+                return []
+
+        # If symptom exists, search in plants table for related plants
+        # Assuming 'TreatableConditions' is a comma-separated string
+        query = f"""SELECT * FROM plants WHERE LOWER(treatable_conditions) LIKE "%{symptom_lower}%" """
+        c.execute(query)
+        plants_rows = c.fetchall()
+
+        plants_list = []
+        for row in plants_rows:
+            # Convert row to dict for easier handling
+            plant_dict = {key: row[key] for key in row.keys()}
+            plants_list.append(plant_dict)
+
+        conn.close()
+        return plants_list
+
+    except sqlite3.Error as e:
+        print(f"Database error: {e}")
+        return []
+
+
+#@tool
+def analyze_symptoms_from_text_ai(user_input:str)->str:
+    """Analyze user-provided text to extract medical symptoms in CSV format.
+    
+    This function sends the user's text description to an AI service which identifies
+    and returns potential medical symptoms in a comma-separated string format.
+    
+    Args:
+        user_input (str): The text containing symptom descriptions to be analyzed.
+                          Example: "I feel some pain in head and I feel dizzy"
+        
+    Returns:
+        str: A comma-separated string of identified symptoms.
+             Example: "pain in head,dizzy"
+             
+    Note:
+        This function requires an internet connection as it makes an API call to
+        an external AI service. The service URL is expected to be available in
+        the 'fasttoken' variable.
+        
+    Example:
+        >>> analyze_symptoms_from_text_ai("I have a headache and nausea")
+        'headache,nausea'
+    """
+    #user_input="""i feel some pain in head and i feel dizzy""" #user input
+    #text_symptoms='pain in head,dizzy' #returned output
+    prompt='''Analyze this text for possible symptoms and list them in only csv format by comma in 1 line from the following text : """{user_input}""" Return "" if no symptoms found.'''
+    prompt=urllib.parse.quote(prompt)
+    response = requests.get(f"{fasttoken}/{prompt}")
+    text_symptoms=response.text
+    
+    return text_symptoms
+ 
+#@tool
+def full_treatment_answer_ai(user_input:str)->str:
+    """
+    Searches a database for treatable conditions based on user-input and getting from it symptoms and plants needed for the treatment.
+
+    Args:
+        user_input (str): A string representing the user's full symptoms.
+
+    Returns:
+        str: Ready Full treatment plan with plants answer about the symptoms  (and with side effects of the plants if available).
+    """
+    all_related_plants=[]
+    """
+    old Return:
+        A list of dictionaries, where each dictionary represents a treatable condition
+        and its associated symptoms. Returns an empty list if no matching conditions are found.
+        Returns None if there's an error connecting to or querying the database.
+    """
+    #EXAMPLE:
+    '''[{'name': 'Neem',
+     'scientific_name': 'Azadirachta indica',
+     'alternate_names': 'Indian Lilac, Margosa Tree',
+     'description': 'Neem is a tropical evergreen tree known for its extensive medicinal properties. Native to the Indian subcontinent, it has been used for thousands of years in traditional medicine systems like Ayurveda and Unani. Various parts of the tree including fruits, seeds, oil, leaves, roots, and bark have therapeutic benefits.',
+     'plant_family': 'Meliaceae',
+     'origin': 'Indian subcontinent',
+     'growth_habitat': 'Tropical and subtropical regions, often found in dry and arid soils',
+     'active_components': 'Azadirachtin, Nimbin, Nimbidin, Sodium nimbidate, Quercetin',
+     'treatable_conditions': 'Skin diseases, infections, fever, diabetes, dental issues, inflammation, malaria, digestive disorders',
+     'preparation_methods': 'Leaves and bark can be dried and powdered; oil extracted from seeds; decoctions and infusions made from leaves or bark',
+     'dosage': 'Varies depending on preparation and condition; oils generally used topically, leaf powder doses range from 500 mg to 2 grams daily when taken orally',
+     'duration': 'Treatment duration depends on condition, often several weeks to months for chronic ailments',
+     'contraindications': 'Pregnant and breastfeeding women advised to avoid internal consumption; caution in people with liver or kidney disease',
+     'side_effects': 'Possible allergic reactions, nausea, diarrhea if consumed in excess',
+     'interactions': 'May interact with blood sugar lowering medications and immunosuppressants',
+     'part_used': 'Leaves, seeds, bark, roots, oil, fruits',
+     'harvesting_time': 'Leaves and fruits commonly harvested in summer; seeds collected when fruits mature',
+     'storage_tips': 'Store dried parts in airtight containers away from direct sunlight; oils kept in cool, dark places',
+     'images': '',
+     'related_videos': '',
+     'sources': 'https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3769010/, https://www.who.int/medicines/areas/traditional/overview/en/'}]'''
+    text_symptoms=user_input#analyze_symptoms_from_text_ai(user_input)
+    symptoms_list=text_symptoms.split(",")
+    symptoms=get_unique_symptoms(symptoms_list)
+    
+    for symptom in symptoms: 
+        related_plants = lookup_symptom_and_plants(symptom)
+        for each in related_plants:
+            all_related_plants.append(each)
+    plants_info=""
+    if len(all_related_plants)>0:
+        plants_info="Here are some plants that might be relevant:\n"
+        for each in all_related_plants[:6]: #GET top 7 if available
+            plants_info+="""Plant:{each['name']}\n{each['description']}\nCures:{each['treatable_conditions']}\nDosage:{each['dosage']}.\n """
+    else:
+        plants_info="No Plants found , please get useful plants from anywhere or any other sources."
+    prompt=f"""I have these symptoms: {",".join(symptoms)}. 
+
+{plants_info}
+
+Please analyze my symptoms and recommend the most appropriate plant remedy. 
+Consider the symptoms, when to use each plant, dosage, and how to use it.
+Provide your recommendation in this format:
+
+**Recommended Plant**: [plant name]
+**Reason**: [why this plant is good for these symptoms]
+**Dosage**: [recommended dosage]
+**Instructions**: [how to use it]
+**Image**: [mention the image is available if applicable]
+
+If multiple plants could work well, you may recommend up to 3 options."""
+
+    #filter the names and description, treatments only and send it in post to AI
+    prompt=urllib.parse.quote(prompt)
+    response = requests.get(f"{fasttoken}/{prompt}")
+    final_result=response.text
+    
+    #Get the answer and send it to user then post all data for each plant in a good form for user to view
+
+    if len(all_related_plants)>0:
+        final_result+="\n---\nMore Details for Plants:\n"
+        for each in all_related_plants[:4]:
+            final_result+=f"""\n**Plant Name**: {each['name']}
+**Other Names**: {each['scientific_name']} , {each['alternate_names']}
+**Description**: {each['description']}
+**Plant Family**: {each['plant_family']}, **Origin**: {each['origin']}
+**Treatment Conditions**: {each['treatable_conditions']}
+**Preparation Methods**: {each['preparation_methods']}
+**Side Effects**: {each['side_effects']}    
+**Storage Tips**: {each['storage_tips']}
+**Info. Sources**: {each['sources']}
+"""
+    return final_result
+
+#example:
+# user_input="""i feel some pain in head and i feel dizzy""" #user input
+# prompt='''Analyze the possible symptoms and list them in only csv format by comma in 1 line,from the following text : """{user_input}"""'''
+# output='pain in head,dizzy'
+# symptoms=output.split(",")
+# get_unique_symptoms(symptoms)
+
+
+#Filter all conditions:
+#all_treatment_conditions=get_all_treatable_conditions()
+#unique_symptoms=get_unique_symptoms(all_treatment_conditions)
+#write_symptoms_into_db(unique_symptoms)
+#related_plants = lookup_symptom_and_plants("fever")
+
+'''
+user_input = "fever"
+related_plants = lookup_symptom_and_plants(user_input)
+if related_plants:
+    print(f"Plants related to '{user_input}':")
+    for plant in related_plants:
+        print(f"- {plant['name']}")
+else:
+    print(f"No plants found for symptom '{user_input}'.")
+'''
+def is_symtoms_intext_ai(text_input:str)->str: #used instead of: analyze_symptoms_from_text_ai()
+    """Gives Symptoms or "" if no symptoms """
+    prompt='''Analyze this text for possible symptoms and list them in only csv format by comma in 1 line from the following text : """{user_input}"""
+    ---
+    Return "" , IF NO SYMTPOMS OR DIESEASE IN THE TEXT
+    '''
+    prompt=urllib.parse.quote(prompt)
+    response = requests.get(f"{fasttoken}/{prompt}")
+    response_text=response.text
+    if len(response_text)>2:
+        if "error" not in response_text.lower():
+            return response_text
+    return ""
+
+class BotanistAssistant:
+    def __init__(self, api_endpoint: str):
+        self.api_endpoint = api_endpoint
+        self.system_message = "You are a botanist assistant that extracts and structures information about medicinal plants."
+        
+    def _build_chat_history(self, history: List[Tuple[str, str]]) -> List[Dict[str, str]]:
+        """Formats chat history into API-compatible message format."""
+        messages = [{"role": "system", "content": self.system_message}]
+        for user_msg, bot_msg in history:
+            if user_msg:
+                messages.append({"role": "user", "content": user_msg})
+            if bot_msg:
+                messages.append({"role": "assistant", "content": bot_msg})
+        return messages
+    
+    def _get_tools_schema(self) -> List[Dict[str, Any]]:
+        """Returns the complete tools schema for plant medicine analysis."""
+        return [
+        {
+            "name": "get_unique_symptoms",
+            "description": "Extracts and deduplicates symptoms from text input. Handles natural language processing to identify individual symptoms from complex descriptions.",
+            "api": {
+                "name": "get_unique_symptoms",
+                "parameters": {
+                    "type": "object",
+                    "properties": {
+                        "list_text": {
+                            "type": "array",
+                            "items": {"type": "string"},
+                            "description": "List of symptom descriptions (strings or tuples)"
+                        }
+                    },
+                    "required": ["list_text"]
+                }
+            }
+        },
+        {
+            "name": "lookup_symptom_and_plants",
+            "description": "Finds medicinal plants associated with specific symptoms from the database. Returns matching plants with their treatment properties.",
+            "api": {
+                "name": "lookup_symptom_and_plants",
+                "parameters": {
+                    "type": "object",
+                    "properties": {
+                        "symptom_input": {
+                            "type": "string",
+                            "description": "Individual symptom to search for plant treatments"
+                        }
+                    },
+                    "required": ["symptom_input"]
+                }
+            }
+        },
+        {
+            "name": "analyze_symptoms_from_text_ai",
+            "description": "AI-powered symptom analysis that interprets natural language descriptions of health conditions and extracts medically relevant symptoms.",
+            "api": {
+                "name": "analyze_symptoms_from_text_ai",
+                "parameters": {
+                    "type": "object",
+                    "properties": {
+                        "text_input": {
+                            "type": "string",
+                            "description": "Raw text description of health condition"
+                        }
+                    },
+                    "required": ["text_input"]
+                }
+            }
+        },
+        {
+            "name": "search_for_treatment_answer_ai",
+            "description": "Comprehensive treatment finder that takes symptoms, analyzes them, and returns complete plant-based treatment plans with dosage instructions.",
+            "api": {
+                "name": "search_for_treatment_answer_ai",
+                "parameters": {
+                    "type": "object",
+                    "properties": {
+                        "list_symptoms": {
+                            "type": "array",
+                            "items": {"type": "string"},
+                            "description": "List of identified symptoms"
+                        }
+                    },
+                    "required": ["list_symptoms"]
+                }
+            }
+        }
+    ]
+    
+    def _call_assistant_api(self, messages: List[Dict[str, str]]) -> Dict[str, Any]:
+        """Makes the API call to the assistant service."""
+        payload = {
+            "model": "openai",
+            "messages": messages,
+            #"tools": self._get_tools_schema(), TOOLS REMOVED 
+            #"tool_choice": "auto" #TODO fix tools 
+        }
+        
+        try:
+            response = requests.post(
+                self.api_endpoint,
+                json=payload,
+                headers={"Content-Type": "application/json"},
+                timeout=30  # 30-second timeout
+            )
+            response.raise_for_status()
+            return response.json() #-_-
+        except requests.exceptions.RequestException as e:
+            print(f"API request failed: {str(e)}")
+            return {"error": str(e)}
+    
+    def respond(
+        self,
+        message: str,
+        history: List[Tuple[str, str]],
+        system_message: str = None
+    ) -> Generator[str, None, None]:
+        """Handles the chat response generation."""
+        # Update system message if provided
+        if system_message:
+            self.system_message = system_message
+            
+        # Build API payload
+        messages = self._build_chat_history(history)
+        messages.append({"role": "user", "content": message})
+        
+        
+        # Get API response
+        api_response = self._call_assistant_api(messages)
+        
+        # Process response
+        if "error" in api_response:
+            yield "Error: Could not connect to the assistant service. Please try again later."
+            return
+        
+        
+        treatment_response=""
+        symtoms_intext=is_symtoms_intext_ai(message)
+        if symtoms_intext:
+            time.sleep(1.6)
+            treatment_response=full_treatment_answer_ai(symtoms_intext)
+            #yield treatment_response
+        
+        if len(treatment_response):
+            treatment_response="\n**I have found that this may help you alot:**\n"+treatment_response
+            yield treatment_response
+        
+        # Get treatment information
+        #treatment_response = search_for_treatment_answer_ai(message)
+        #yield treatment_response  # First yield the treatment info
+        
+        # Stream additional assistant responses if available
+        if "choices" in api_response:
+            for choice in api_response["choices"]:
+                if "message" in choice and "content" in choice["message"]:
+                    yield choice["message"]["content"].split("**Sponsor**")[0].split("Sponsor")[0]
+
+def create_app(api_endpoint: str) -> gr.Blocks:
+    """Creates and configures the Gradio interface."""
+    assistant = BotanistAssistant(api_endpoint)
+    
+    with gr.Blocks(title="Botanist Assistant", theme=gr.themes.Soft()) as demo:
+        gr.Markdown("# 🌿 Natural Medical Assistant")
+        gr.Markdown("Describe your symptoms to get natural plant-based treatment recommendations")
+        
+        with gr.Row():
+            with gr.Column(scale=3):
+                chat = gr.ChatInterface(
+                    assistant.respond,
+                    additional_inputs=[
+                        gr.Textbox(
+                            value=assistant.system_message,
+                            label="System Role",
+                            interactive=True
+                        )
+                    ]
+                )
+            with gr.Column(scale=1):
+                gr.Markdown("### Common Symptoms")
+                gr.Examples(
+                    examples=[
+                        ["I have headache and fever"],
+                        ["got nausea, and injury caused bleeding"],
+                        ["I feel insomnia and anxiety"],
+                        ["I am suffering from ADHD"]
+                    ],
+                    inputs=chat.textbox,
+                    label="Try these examples"
+                )
+                
+        gr.Markdown("---")
+        gr.Markdown("""> Note: Recommendations can work as real cure treatment but you can consider it as informational purposes only.
+Also You can consult a Natrual healthcare professional before use.""")
+
+    
+    return demo
+
+if __name__ == "__main__":
+    API_ENDPOINT = specialtoken # Replace with your actual endpoint
+    app = create_app(API_ENDPOINT)
+    app.launch(
+        server_name="0.0.0.0",
+        server_port=7860,
+        share=False,
+        favicon_path="🌿"  # Optional: Add path to plant icon
     )