{ "ADE-Identification": { "Language": "https://huggingface.co/datasets/ade-benchmark-corpus/ade_corpus_v2", "Task Type": "Text Classification", "Clinical Context": "Pharmacology", "Data Access": "Open Access", "Applications": "ADE & Incidents", "Clinical Stage": "Treatment and Intervention" }, "ADE-Extraction": { "Language": "https://huggingface.co/datasets/ade-benchmark-corpus/ade_corpus_v2", "Task Type": "Event Extraction", "Clinical Context": "Pharmacology", "Data Access": "Open Access", "Applications": "ADE & Incidents", "Clinical Stage": "Treatment and Intervention" }, "ADE-Drug dosage": { "Language": "https://huggingface.co/datasets/ade-benchmark-corpus/ade_corpus_v2", "Task Type": "Event Extraction", "Clinical Context": "Pharmacology", "Data Access": "Open Access", "Applications": "Medication information", "Clinical Stage": "Treatment and Intervention" }, "BARR2": { "Language": "https://temu.bsc.es/BARR2/datasets.html", "Task Type": "Event Extraction", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Concept standarization", "Clinical Stage": "Research" }, "BrainMRI-AIS": { "Language": "https://doi.org/10.1371/journal.pone.0212778.s002", "Task Type": "Text Classification", "Clinical Context": "Neurology, Radiology", "Data Access": "Open Access", "Applications": "Diagnosis", "Clinical Stage": "Diagnosis and Prognosis" }, "Cantemist-Coding": { "Language": "https://zenodo.org/record/3978041#.YzKutOxBwq0", "Task Type": "Normalization and Coding", "Clinical Context": "Oncology", "Data Access": "Open Access", "Applications": "Billing & Coding", "Clinical Stage": "Discharge and Administration" }, "Cantemis-NER": { "Language": "https://zenodo.org/record/3978041#.YzKutOxBwq0", "Task Type": "Named Entity Recognition", "Clinical Context": "Oncology", "Data Access": "Open Access", "Applications": "Billing & Coding", "Clinical Stage": "Discharge and Administration" }, "Cantemis-Norm": { "Language": 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"Billing & Coding", "Clinical Stage": "Discharge and Administration" }, "CARES-ICD10 Subblock": { "Language": "https://huggingface.co/datasets/chizhikchi/CARES", "Task Type": "Normalization and Coding", "Clinical Context": "Radiology", "Data Access": "Open Access", "Applications": "Billing & Coding", "Clinical Stage": "Discharge and Administration" }, "CHIP-CDEE": { "Language": "https://tianchi.aliyun.com/dataset/95414", "Task Type": "Event Extraction", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Temporal/Causality determination", "Clinical Stage": "Initial Assessment" }, "C-EMRS": { "Language": "https:// github.com/YangzlTHU/C-EMRs", "Task Type": "Text Classification", "Clinical Context": "Radiology, Endocrinology, Pulmonology, Cardiology, Gastroenterology", "Data Access": "Open Access", "Applications": "Diagnosis", "Clinical Stage": "Diagnosis and Prognosis" }, "CodiEsp-ICD-10-CM": { "Language": "https://zenodo.org/record/3837305#.YwXJRXZBw2y", "Task Type": "Normalization and Coding", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Billing & Coding", "Clinical Stage": "Discharge and Administration" }, "CodiEsp-ICD-10-PCS": { "Language": "https://zenodo.org/record/3837305#.YwXJRXZBw2y", "Task Type": "Normalization and Coding", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Billing & Coding", "Clinical Stage": "Discharge and Administration" }, "ClinicalNotes-UPMC": { "Language": "https://code.google.com/archive/p/negex/downloads?page=2", "Task Type": "Text Classification", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Negation identification", "Clinical Stage": "Research" }, "PPTS": { "Language": "https://www.mdpi.com/article/10.3390/diagnostics12102536/s1", "Task Type": "Text Classification", "Clinical Context": "Pulmonology", "Data Access": "Open Access", "Applications": "Diagnosis", "Clinical Stage": "Diagnosis and Prognosis" }, "CLINpt-NER": { "Language": "https://github.com/fabioacl/PortugueseClinicalNER", "Task Type": "Named Entity Recognition", "Clinical Context": "Neurology", "Data Access": "Open Access", "Applications": "Procudure information", "Clinical Stage": "Treatment and Intervention" }, "cMedQA": { "Language": "https://github.com/zhangsheng93/cMedQA\nhttps://github.com/zhangsheng93/cMedQA2", "Task Type": "Question Answering", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Screen & Consultation", "Clinical Stage": "Triage and Referral" }, "DialMed": { "Language": "https://github.com/f-window/DialMed/tree/main/data/dataset", "Task Type": "Text Classification", "Clinical Context": "Pulmonology, Gastroenterology, Dermatology, Pharmacology", "Data Access": "Open Access", "Applications": "Medication information", "Clinical Stage": "Treatment and Intervention" }, "MIE": { "Language": "https://github.com/nlpir2020/MIE-ACL-2020/tree/master/data", "Task Type": "Event Extraction", "Clinical Context": "Cardiology", "Data Access": "Open Access", "Applications": "Phenotyping", "Clinical Stage": "Initial Assessment" }, "Ex4CDS": { "Language": "https://github.com/DFKI-NLP/Ex4CDS", "Task Type": "Named Entity Recognition", "Clinical Context": "Nephrology", "Data Access": "Open Access", "Applications": "Procudure information", "Clinical Stage": "Treatment and Intervention" }, "IMCS-V2-NER": { "Language": "https://tianchi.aliyun.com/dataset/95414", "Task Type": "Named Entity Recognition", "Clinical Context": "Pediatrics", "Data Access": "Open Access", "Applications": "Phenotyping", "Clinical Stage": "Initial Assessment" }, "JP-STS": { "Language": "https://github.com/sociocom/Japanese-Clinical-STS", "Task Type": "Semantic Similarity", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Semantic relation", "Clinical Stage": "Research" }, "meddocan": { "Language": "https://github.com/PlanTL-GOB-ES/SPACCC_MEDDOCAN", "Task Type": "Named Entity Recognition", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "De-identification", "Clinical Stage": "Research" }, "MEDIQA 2019-RQE": { "Language": "https://www.aicrowd.com/challenges/mediqa-2019-recognizing-question-entailment-rqe#datasets", "Task Type": "Natural Language Inference", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Screen & Consultation", "Clinical Stage": "Triage and Referral" }, "MTS": { "Language": "https://mtsamples.com/", "Task Type": "Text Classification", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Data organization", "Clinical Stage": "Research" }, "MTS-Temporal": { "Language": "https://github.com/medesto/timeline-reconstruction", "Task Type": "Named Entity Recognition", "Clinical Context": "Pediatrics, Psychology", "Data Access": "Open Access", "Applications": "Temporal/Causality determination", "Clinical Stage": "Initial Assessment" }, "NorSynthClinical-NER": { "Language": "https://github.com/ltgoslo/NorSynthClinical", "Task Type": "Named Entity Recognition", "Clinical Context": "Cardiology", "Data Access": "Open Access", "Applications": "Temporal/Causality determination", "Clinical Stage": "Initial Assessment" }, "NorSynthClinical-RE": { "Language": "https://github.com/ltgoslo/NorSynthClinical", "Task Type": "Event Extraction", "Clinical Context": "Cardiology", "Data Access": "Open Access", "Applications": "Temporal/Causality determination", "Clinical Stage": "Initial Assessment" }, "NUBES": { "Language": "https://github.com/Vicomtech/NUBes-negation-uncertainty-biomedical-corpus", "Task Type": "Event Extraction", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Negation identification", "Clinical Stage": "Research" }, "MEDIQA 2023-chat-A": { "Language": "https://github.com/abachaa/MTS-Dialog", "Task Type": "Summarization", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Encounter summarization", "Clinical Stage": "Initial Assessment" }, "MEDIQA 2023-sum-A": { "Language": "https://github.com/abachaa/MTS-Dialog", "Task Type": "Text Classification", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Data organization", "Clinical Stage": "Research" }, "MEDIQA 2023-sum-B": { "Language": "https://github.com/abachaa/MTS-Dialog", "Task Type": "Summarization", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Encounter summarization", "Clinical Stage": "Initial Assessment" }, "RuMedDaNet": { "Language": "https://github.com/sberbank-ai-lab/RuMedBench/tree/main/data/RuMedDaNet", "Task Type": "Natural Language Inference", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Screen & Consultation", "Clinical Stage": "Triage and Referral" }, "CBLUE-CDN": { "Language": "https://tianchi.aliyun.com/dataset/95414", "Task Type": "Normalization and Coding", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Billing & Coding", "Clinical Stage": "Discharge and Administration" }, "CHIP-CTC": { "Language": "https://tianchi.aliyun.com/dataset/95414", "Task Type": "Text Classification", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Clinical trial matching", "Clinical Stage": "Research" }, "CHIP-MDCFNPC": { "Language": "https://tianchi.aliyun.com/dataset/95414", "Task Type": "Event Extraction", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Phenotyping", "Clinical Stage": "Initial Assessment" }, "MedDG": { "Language": "https://tianchi.aliyun.com/dataset/95414", "Task Type": "Question Answering", "Clinical Context": "Gastroenterology", "Data Access": "Open Access", "Applications": "Screen & Consultation", "Clinical Stage": "Triage and Referral" }, "IMCS-V2-SR": { "Language": "https://tianchi.aliyun.com/dataset/95414", "Task Type": "Event Extraction", "Clinical Context": "Pediatrics", "Data Access": "Open Access", "Applications": "Phenotyping", "Clinical Stage": "Initial Assessment" }, "IMCS-V2-MRG": { "Language": "https://tianchi.aliyun.com/dataset/95414", "Task Type": "Summarization", "Clinical Context": "Pediatrics", "Data Access": "Open Access", "Applications": "Encounter summarization", "Clinical Stage": "Initial Assessment" }, "IMCS-V2-DAC": { "Language": "https://tianchi.aliyun.com/dataset/95414", "Task Type": "Text Classification", "Clinical Context": "Pediatrics", "Data Access": "Open Access", "Applications": "Screen & Consultation", "Clinical Stage": "Triage and Referral" }, "RuDReC-NER": { "Language": "https://github.com/cimm-kzn/RuDReC/tree/master", "Task Type": "Named Entity Recognition", "Clinical Context": "Pharmacology", "Data Access": "Open Access", "Applications": "ADE & Incidents", "Clinical Stage": "Treatment and Intervention" }, "NorSynthClinical-PHI": { "Language": "https://github.com/synnobra/NorSynthClinical-PHI", "Task Type": "Named Entity Recognition", "Clinical Context": "Cardiology", "Data Access": "Open Access", "Applications": "De-identification", "Clinical Stage": "Research" }, "RuCCoN": { "Language": "https://github.com/AIRI-Institute/RuCCoN", "Task Type": "Named Entity Recognition", "Clinical Context": "Pulmonology", "Data Access": "Open Access", "Applications": "Procudure information", "Clinical Stage": "Treatment and Intervention" }, "CLISTER": { "Language": "https://gitlab.inria.fr/codeine/clister", "Task Type": "Semantic Similarity", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Semantic relation", "Clinical Stage": "Research" }, "GraSSCo PHI": { "Language": "https://zenodo.org/records/11502329", "Task Type": "Named Entity Recognition", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "De-identification", "Clinical Stage": "Research" }, "IFMIR-Incident type": { "Language": "https://figshare.com/articles/dataset/A_corpus_of_machine-annotated_incident_reports_of_medication_errors/21541650/3?file=41222790", "Task Type": "Text Classification", "Clinical Context": "Pharmacology", "Data Access": "Open Access", "Applications": "ADE & Incidents", "Clinical Stage": "Treatment and Intervention" }, "IFMIR-NER": { "Language": "https://figshare.com/articles/dataset/A_corpus_of_machine-annotated_incident_reports_of_medication_errors/21541650/3?file=41222790", "Task Type": "Named Entity Recognition", "Clinical Context": "Pharmacology", "Data Access": "Open Access", "Applications": "ADE & Incidents", "Clinical Stage": "Treatment and Intervention" }, "IFMIR-NER&factuality": { "Language": "https://figshare.com/articles/dataset/A_corpus_of_machine-annotated_incident_reports_of_medication_errors/21541650/3?file=41222790", "Task Type": "Event Extraction", "Clinical Context": "Pharmacology", "Data Access": "Open Access", "Applications": "ADE & Incidents", "Clinical Stage": "Treatment and Intervention" }, "iCorpus": { "Language": "https://ai-health.m.u-tokyo.ac.jp/home/research/corpus", "Task Type": "Named Entity Recognition", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Procudure information", "Clinical Stage": "Treatment and Intervention" }, "icliniq-10k": { "Language": "https://github.com/Kent0n-Li/ChatDoctor", "Task Type": "Question Answering", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Screen & Consultation", "Clinical Stage": "Triage and Referral" }, "HealthCareMagic-100k": { "Language": "https://github.com/Kent0n-Li/ChatDoctor", "Task Type": "Question Answering", "Clinical Context": "General", "Data Access": "Open Access", "Applications": "Screen & Consultation", "Clinical Stage": "Triage and Referral" } }