Ym420 commited on
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15c290d
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verified ·
1 Parent(s): 2392427

Update app.py

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Files changed (1) hide show
  1. app.py +3 -2
app.py CHANGED
@@ -54,14 +54,15 @@ def extract_features_app(seq: str) -> pd.DataFrame:
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  aromatic = np.mean([(dp[0] in 'FWY') + (dp[1] in 'FWY') for dp in dipeptides_seq]) / 2.0
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  pI = np.mean([h(dp, {aa: 7 + (int(aa in 'KRH') - int(aa in 'DE')) for aa in aa_list}) for dp in dipeptides_seq])
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  instability = np.mean([((dp[0] in 'DEKR') + (dp[1] in 'DEKR')) / 2.0 for dp in dipeptides_seq])
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- hydro_moment = np.sqrt(np.mean([(h(dp, hydrophobicity_scale))**2 for dp in dipeptides_seq]))
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  aliphatic = np.mean([h(dp, aa_aliphatic) for dp in dipeptides_seq])
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  boman = np.mean([h(dp, aa_boman) for dp in dipeptides_seq])
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  flexibility = np.mean([h(dp, aa_flexibility) for dp in dipeptides_seq])
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  polarizability = np.mean([h(dp, aa_polarizability) for dp in dipeptides_seq])
 
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  physchem_features = [mw, charge, hydro, aromatic, pI, instability,
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- hydro_moment, aliphatic, boman, flexibility, polarizability]
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  features = dipep_features + physchem_features
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  aromatic = np.mean([(dp[0] in 'FWY') + (dp[1] in 'FWY') for dp in dipeptides_seq]) / 2.0
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  pI = np.mean([h(dp, {aa: 7 + (int(aa in 'KRH') - int(aa in 'DE')) for aa in aa_list}) for dp in dipeptides_seq])
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  instability = np.mean([((dp[0] in 'DEKR') + (dp[1] in 'DEKR')) / 2.0 for dp in dipeptides_seq])
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+ hydro_moment = np.sqrt(np.mean([(h(dp, eisenberg_scale))**2 for dp in dipeptides_seq]))
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  aliphatic = np.mean([h(dp, aa_aliphatic) for dp in dipeptides_seq])
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  boman = np.mean([h(dp, aa_boman) for dp in dipeptides_seq])
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  flexibility = np.mean([h(dp, aa_flexibility) for dp in dipeptides_seq])
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  polarizability = np.mean([h(dp, aa_polarizability) for dp in dipeptides_seq])
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+ deltag = np.mean([h(dp, aa_deltaG) for dp in dipeptides])
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  physchem_features = [mw, charge, hydro, aromatic, pI, instability,
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+ hydro_moment, aliphatic, boman, flexibility, polarizability, deltag]
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  features = dipep_features + physchem_features
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