Spaces:
Sleeping
Sleeping
Zeggai Abdellah
commited on
Commit
Β·
e40cfb6
1
Parent(s):
b12f17b
add fall back system
Browse files- rag_pipeline.py +243 -69
rag_pipeline.py
CHANGED
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@@ -1,7 +1,8 @@
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# -*- coding: utf-8 -*-
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"""
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-
Enhanced RAG Pipeline for vaccine assistant
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Handles agent creation and question answering with sequential citation numbering
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"""
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import json
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@@ -106,13 +107,60 @@ def convert_citations_to_sequential(response_text, source_id_to_number_map):
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return sequential_response
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-
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def create_safe_custom_prompt(tools, llm):
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"""Create a safe version that won't have formatting conflicts"""
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print(f"[LOG] Creating custom prompt with {len(tools)} tools")
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-
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## MEDICAL ASSISTANT ROLE
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You are a helpful and knowledgeable AI-powered vaccine assistant designed to support doctors in clinical decision-making.
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You provide evidence-based guidance using only information from official vaccine medical documents.
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@@ -176,43 +224,70 @@ If you cannot find complete information to fully answer a question:
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template_vars=original_prompt.template_vars,
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metadata=original_prompt.metadata if hasattr(original_prompt, 'metadata') else None
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)
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print("[LOG] β
Successfully created
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return new_prompt
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except:
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# Even safer fallback
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print("[LOG] β οΈ Using fallback prompt template")
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return PromptTemplate(template=safe_template)
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"""Create the ReAct agent with custom prompt"""
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agent = ReActAgent.from_tools(
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tools,
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llm=llm,
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verbose=True,
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max_iterations=
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)
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# Create and apply
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try:
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safe_custom_prompt = create_safe_custom_prompt(tools, llm)
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agent.update_prompts({"agent_worker:system_prompt": safe_custom_prompt})
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print("β
Successfully updated with
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except Exception as e:
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print(f"β
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print("β οΈ Using original agent without modifications")
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print("[LOG]
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return agent
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def initialize_rag_pipeline(tools):
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"""Initialize the RAG pipeline with
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print("[LOG] Initializing RAG pipeline...")
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print(f"[LOG] Available tools: {[tool.metadata.name if hasattr(tool, 'metadata') else str(tool) for tool in tools]}")
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# Initialize LlamaIndex LLM
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api_key=os.getenv('GOOGLE_API_KEY'),
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)
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# Create agent
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def process_question(
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"""Process a question through the RAG pipeline"""
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print(f"[LOG] Processing question: '{question[:100]}{'...' if len(question) > 100 else ''}'")
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print("="*50)
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print("AGENT REASONING PROCESS:")
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print("="*50)
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start_time = time.time()
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try:
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#
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response =
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print("="*50)
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print("
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print("="*50)
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elapsed_time = time.time() - start_time
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print(f"[LOG] β
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print(f"[LOG] Response length: {len(
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return response.response
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except Exception as e:
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elapsed_time = time.time() - start_time
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print(f"[LOG] β
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return f"Error processing your question: {str(e)}"
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def aswer_language_detection(response_text: str) -> str:
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"""
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Detect the language of the response text.
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return answer_language
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def process_question_with_sequential_citations(
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"""
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Process a question through the RAG pipeline and return response with sequential citation numbers.
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Args:
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question (str): The user's question
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chunks_directory (str): Path to the directory containing JSON files
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"response": str, # Response with sequential citation numbers [1], [2], etc.
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"cited_elements_json": str, # JSON array of cited elements in order
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"unique_ids": list, # Original source IDs in order
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"citation_mapping": dict # Mapping from source ID to citation number
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}
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"""
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print(f"\n[LOG] === STARTING QUESTION PROCESSING ===")
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print(f"[LOG] Question: '{question[:150]}{'...' if len(question) > 150 else ''}'")
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print(f"[LOG] Chunks directory: {chunks_directory}")
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start_time = time.time()
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try:
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# Get the response
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print("π€ AGENT REASONING PROCESS STARTING...")
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print("="*60)
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print("="*60)
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response_text = response.response
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agent_time = time.time() - start_time
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print(f"[LOG] Agent processing completed in {agent_time:.2f} seconds")
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print(f"[LOG] Raw response length: {len(response_text)} characters")
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# Enhanced handling for max iterations error
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if ("max iterations" in response_text.lower() or
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"reached max iterations" in response_text.lower() or
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len(response_text.strip()) == 0 or
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"agent stopped due to max iterations" in response_text.lower()):
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print("[LOG] β οΈ Detected max iterations error, providing fallback response")
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# Provide a more helpful fallback response
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response_text = ("I apologize, but I encountered difficulties processing your question within the available search iterations. "
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"This may be due to the complexity of your query or limitations in finding specific information in the available documents. "
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"Please try rephrasing your question more specifically, or break it down into smaller, more focused questions for better results.")
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# Extract source IDs from the response (preserving order)
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unique_ids = extract_source_ids(response_text)
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# Convert to JSON
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cited_elements_json = json.dumps(cited_elements_ordered, ensure_ascii=False, indent=2)
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total_time = time.time() - start_time
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print(f"[LOG] β
Processing completed in {total_time:.2f} seconds total")
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print(f"[LOG] Final response length: {len(sequential_response)} characters")
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print(f"[LOG] === QUESTION PROCESSING COMPLETED ===\n")
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return {
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"cited_elements_json": cited_elements_json,
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"unique_ids": unique_ids,
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"citation_mapping": source_id_to_number,
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"answer_language":
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}
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except Exception as e:
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"cited_elements_json": "[]",
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"unique_ids": [],
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"citation_mapping": {},
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"answer_language": "en"
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}
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"""
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Legacy function - maintained for backward compatibility.
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Now calls the new sequential citation function.
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"""
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print("[LOG] Using legacy function wrapper - redirecting to sequential citations")
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return process_question_with_sequential_citations(
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# -*- coding: utf-8 -*-
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"""
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+
Enhanced RAG Pipeline for vaccine assistant with fallback system
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Handles agent creation and question answering with sequential citation numbering
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+
Includes fallback agent for max iterations handling
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"""
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import json
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return sequential_response
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def create_safe_custom_prompt(tools, llm, is_fallback=False):
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"""Create a safe version that won't have formatting conflicts"""
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print(f"[LOG] Creating {'fallback' if is_fallback else 'standard'} custom prompt with {len(tools)} tools")
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if is_fallback:
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custom_instructions = """
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## MEDICAL ASSISTANT ROLE - FALLBACK MODE
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You are a helpful and knowledgeable AI-powered vaccine assistant designed to support doctors in clinical decision-making.
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You are operating in FALLBACK MODE with access to only the most essential and comprehensive tools.
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You provide evidence-based guidance using only information from official vaccine medical documents.
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Answer the doctor's question accurately and concisely using only the provided information.
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## FALLBACK MODE INSTRUCTIONS
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- You have access to only 2 powerful tools that search the entire main documents
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- Use Guide_vector_tool for questions about the Algerian National Vaccination Guide
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- Use Immunization_in_Practice_tool for questions requiring WHO global guidance
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- Be direct and efficient - search once with each tool if needed, then provide your answer
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- Do not overthink or search repeatedly - these tools are comprehensive
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## IMPORTANT REQUIREMENTS
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### Citation and Sourcing
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1. For each fact in your response, include an inline citation in the format [Source] immediately following the information, e.g., [e795ebd28318886c0b1a5395ac30ad90].
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2. Do NOT use 'Source:' in the citation format; use only the Source in square brackets.
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3. If a fact is supported by multiple sources, use adjacent citations: [e795ebd28318886c0b1a5395ac30ad90][21a932b2340bb16707763f57f0ad2]
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4. Use ONLY the provided information and never include facts from your general knowledge.
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### Content Formatting
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1. When rendering tables:
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- Convert HTML tables into clean Markdown format
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- Preserve all original headers and data rows exactly
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- Include the citation in the table caption, e.g., 'Table: Vaccination Schedule [Source]'
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2. For lists, maintain the original bullet points/numbering and include citations.
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3. Present information concisely but ensure clinical accuracy is never compromised.
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### CRITICAL: Efficient Fallback Strategy
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1. **SEARCH ONCE**: Use each tool at most once - they are comprehensive and powerful
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2. **BE DECISIVE**: Once you find relevant information, formulate your response immediately
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3. **ANSWER DIRECTLY**: Provide a clear, direct answer based on the information found
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4. **STOP WHEN SUFFICIENT**: If you have found adequate information, provide the response and stop
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5. **COMPREHENSIVE COVERAGE**: These tools search entire documents, so one search should be sufficient
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### Response Guidelines
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- Start with the most relevant tool for the question
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- If the question requires both Algerian-specific and global context, use both tools once each
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- Provide whatever information you find with proper citations
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- If information is limited, clearly state what is and isn't available in the documents
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---
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"""
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else:
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custom_instructions = """
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## MEDICAL ASSISTANT ROLE
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You are a helpful and knowledgeable AI-powered vaccine assistant designed to support doctors in clinical decision-making.
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You provide evidence-based guidance using only information from official vaccine medical documents.
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template_vars=original_prompt.template_vars,
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metadata=original_prompt.metadata if hasattr(original_prompt, 'metadata') else None
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)
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print(f"[LOG] β
Successfully created {'fallback' if is_fallback else 'standard'} custom prompt")
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return new_prompt
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except:
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| 230 |
# Even safer fallback
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print(f"[LOG] β οΈ Using fallback prompt template for {'fallback' if is_fallback else 'standard'} agent")
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return PromptTemplate(template=safe_template)
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+
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+
def create_agent(tools, llm, is_fallback=False):
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"""Create the ReAct agent with custom prompt"""
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agent_type = "FALLBACK" if is_fallback else "STANDARD"
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max_iter = 3 if is_fallback else 8
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print(f"[LOG] Creating {agent_type} ReAct agent with {len(tools)} tools and max_iterations={max_iter}")
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# Create agent with appropriate settings
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agent = ReActAgent.from_tools(
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tools,
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llm=llm,
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verbose=True,
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max_iterations=max_iter, # Reduced iterations for fallback agent
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)
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# Create and apply appropriate custom prompt
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try:
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safe_custom_prompt = create_safe_custom_prompt(tools, llm, is_fallback=is_fallback)
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agent.update_prompts({"agent_worker:system_prompt": safe_custom_prompt})
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print(f"β
Successfully updated {agent_type} agent with custom prompt")
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except Exception as e:
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print(f"β {agent_type} agent prompt update failed: {e}")
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print(f"β οΈ Using original {agent_type} agent without modifications")
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print(f"[LOG] {agent_type} agent creation completed")
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return agent
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+
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def create_fallback_tools(all_tools):
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"""Extract only the guide_retrieval_tool and immunization_tool for fallback agent"""
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print("[LOG] Creating fallback tools (guide + immunization only)")
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+
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fallback_tools = []
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tool_names_found = []
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for tool in all_tools:
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tool_name = tool.metadata.name if hasattr(tool, 'metadata') else str(tool)
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if tool_name in ["Guide_vector_tool", "Immunization_in_Practice_tool"]:
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fallback_tools.append(tool)
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| 276 |
+
tool_names_found.append(tool_name)
|
| 277 |
+
|
| 278 |
+
print(f"[LOG] Found {len(fallback_tools)} fallback tools: {tool_names_found}")
|
| 279 |
+
|
| 280 |
+
if len(fallback_tools) == 0:
|
| 281 |
+
print("[LOG] β ERROR: No fallback tools found! Check tool names.")
|
| 282 |
+
return None
|
| 283 |
+
|
| 284 |
+
return fallback_tools
|
| 285 |
+
|
| 286 |
+
|
| 287 |
def initialize_rag_pipeline(tools):
|
| 288 |
+
"""Initialize the RAG pipeline with both standard and fallback agents"""
|
| 289 |
|
| 290 |
+
print("[LOG] Initializing RAG pipeline with fallback system...")
|
| 291 |
print(f"[LOG] Available tools: {[tool.metadata.name if hasattr(tool, 'metadata') else str(tool) for tool in tools]}")
|
| 292 |
|
| 293 |
# Initialize LlamaIndex LLM
|
|
|
|
| 297 |
api_key=os.getenv('GOOGLE_API_KEY'),
|
| 298 |
)
|
| 299 |
|
| 300 |
+
# Create standard agent
|
| 301 |
+
print("[LOG] Creating standard agent...")
|
| 302 |
+
standard_agent = create_agent(tools, llama_index_llm, is_fallback=False)
|
| 303 |
|
| 304 |
+
# Create fallback tools and agent
|
| 305 |
+
print("[LOG] Creating fallback agent...")
|
| 306 |
+
fallback_tools = create_fallback_tools(tools)
|
| 307 |
+
|
| 308 |
+
if fallback_tools is None:
|
| 309 |
+
print("[LOG] β WARNING: Fallback agent creation failed - no fallback tools available")
|
| 310 |
+
fallback_agent = None
|
| 311 |
+
else:
|
| 312 |
+
fallback_agent = create_agent(fallback_tools, llama_index_llm, is_fallback=True)
|
| 313 |
+
print("[LOG] β
Fallback agent created successfully")
|
| 314 |
+
|
| 315 |
+
print("[LOG] β
RAG pipeline initialization completed with fallback system")
|
| 316 |
+
|
| 317 |
+
return {
|
| 318 |
+
"standard_agent": standard_agent,
|
| 319 |
+
"fallback_agent": fallback_agent,
|
| 320 |
+
"llm": llama_index_llm
|
| 321 |
+
}
|
| 322 |
+
|
| 323 |
+
|
| 324 |
+
def detect_max_iterations_error(response_text):
|
| 325 |
+
"""Detect if the response indicates a max iterations error"""
|
| 326 |
+
|
| 327 |
+
max_iteration_indicators = [
|
| 328 |
+
"max iterations",
|
| 329 |
+
"reached max iterations",
|
| 330 |
+
"agent stopped due to max iterations",
|
| 331 |
+
"maximum number of iterations",
|
| 332 |
+
"iteration limit"
|
| 333 |
+
]
|
| 334 |
+
|
| 335 |
+
response_lower = response_text.lower()
|
| 336 |
+
|
| 337 |
+
# Check for max iterations indicators
|
| 338 |
+
for indicator in max_iteration_indicators:
|
| 339 |
+
if indicator in response_lower:
|
| 340 |
+
return True
|
| 341 |
+
|
| 342 |
+
# Check for very short or empty responses (often indicates failure)
|
| 343 |
+
if len(response_text.strip()) < 10:
|
| 344 |
+
return True
|
| 345 |
+
|
| 346 |
+
# Check for generic error patterns
|
| 347 |
+
if ("error" in response_lower and "processing" in response_lower):
|
| 348 |
+
return True
|
| 349 |
+
|
| 350 |
+
return False
|
| 351 |
+
|
| 352 |
|
| 353 |
+
def process_question(agents_dict, question: str) -> str:
|
| 354 |
+
"""Process a question through the RAG pipeline with fallback support"""
|
| 355 |
print(f"[LOG] Processing question: '{question[:100]}{'...' if len(question) > 100 else ''}'")
|
| 356 |
+
|
| 357 |
+
standard_agent = agents_dict["standard_agent"]
|
| 358 |
+
fallback_agent = agents_dict["fallback_agent"]
|
| 359 |
+
|
| 360 |
print("="*50)
|
| 361 |
+
print("π€ STANDARD AGENT REASONING PROCESS:")
|
| 362 |
print("="*50)
|
| 363 |
start_time = time.time()
|
| 364 |
|
| 365 |
try:
|
| 366 |
+
# Try standard agent first
|
| 367 |
+
response = standard_agent.chat(question)
|
| 368 |
+
response_text = response.response
|
| 369 |
|
| 370 |
print("="*50)
|
| 371 |
+
print("π€ STANDARD AGENT REASONING COMPLETED")
|
| 372 |
print("="*50)
|
| 373 |
|
| 374 |
elapsed_time = time.time() - start_time
|
| 375 |
+
print(f"[LOG] β
Standard agent response received in {elapsed_time:.2f} seconds")
|
| 376 |
+
print(f"[LOG] Response length: {len(response_text)} characters")
|
| 377 |
+
|
| 378 |
+
# Check if we need to use fallback
|
| 379 |
+
if detect_max_iterations_error(response_text):
|
| 380 |
+
print("[LOG] π Max iterations detected, switching to FALLBACK AGENT...")
|
| 381 |
+
|
| 382 |
+
if fallback_agent is None:
|
| 383 |
+
print("[LOG] β Fallback agent not available, returning error message")
|
| 384 |
+
return ("I apologize, but I encountered difficulties processing your question. "
|
| 385 |
+
"Please try rephrasing your question more specifically or breaking it down into smaller parts.")
|
| 386 |
+
|
| 387 |
+
print("="*50)
|
| 388 |
+
print("π‘οΈ FALLBACK AGENT REASONING PROCESS:")
|
| 389 |
+
print("="*50)
|
| 390 |
+
|
| 391 |
+
fallback_start_time = time.time()
|
| 392 |
+
|
| 393 |
+
try:
|
| 394 |
+
fallback_response = fallback_agent.chat(question)
|
| 395 |
+
fallback_text = fallback_response.response
|
| 396 |
+
|
| 397 |
+
print("="*50)
|
| 398 |
+
print("π‘οΈ FALLBACK AGENT REASONING COMPLETED")
|
| 399 |
+
print("="*50)
|
| 400 |
+
|
| 401 |
+
fallback_elapsed = time.time() - fallback_start_time
|
| 402 |
+
total_elapsed = time.time() - start_time
|
| 403 |
+
|
| 404 |
+
print(f"[LOG] β
Fallback agent response received in {fallback_elapsed:.2f} seconds")
|
| 405 |
+
print(f"[LOG] Total processing time: {total_elapsed:.2f} seconds")
|
| 406 |
+
print(f"[LOG] Fallback response length: {len(fallback_text)} characters")
|
| 407 |
+
|
| 408 |
+
# Check if fallback also failed
|
| 409 |
+
if detect_max_iterations_error(fallback_text):
|
| 410 |
+
print("[LOG] β Fallback agent also hit max iterations")
|
| 411 |
+
return ("I apologize, but I'm having difficulty finding specific information about your question in the available documents. "
|
| 412 |
+
"Please try asking a more specific question or rephrasing your query.")
|
| 413 |
+
|
| 414 |
+
return fallback_text
|
| 415 |
+
|
| 416 |
+
except Exception as e:
|
| 417 |
+
fallback_elapsed = time.time() - fallback_start_time
|
| 418 |
+
print(f"[LOG] β Fallback agent error after {fallback_elapsed:.2f} seconds: {e}")
|
| 419 |
+
return ("I apologize, but I encountered an error while processing your question. "
|
| 420 |
+
"Please try rephrasing your question or asking about a more specific topic.")
|
| 421 |
+
|
| 422 |
+
return response_text
|
| 423 |
|
|
|
|
| 424 |
except Exception as e:
|
| 425 |
elapsed_time = time.time() - start_time
|
| 426 |
+
print(f"[LOG] β Standard agent error after {elapsed_time:.2f} seconds: {e}")
|
| 427 |
+
|
| 428 |
+
# Try fallback even on standard agent exception
|
| 429 |
+
if fallback_agent is not None:
|
| 430 |
+
print("[LOG] π Standard agent failed, trying FALLBACK AGENT...")
|
| 431 |
+
try:
|
| 432 |
+
fallback_response = fallback_agent.chat(question)
|
| 433 |
+
return fallback_response.response
|
| 434 |
+
except Exception as fallback_e:
|
| 435 |
+
print(f"[LOG] β Fallback agent also failed: {fallback_e}")
|
| 436 |
+
|
| 437 |
return f"Error processing your question: {str(e)}"
|
| 438 |
|
| 439 |
+
|
| 440 |
def aswer_language_detection(response_text: str) -> str:
|
| 441 |
"""
|
| 442 |
Detect the language of the response text.
|
|
|
|
| 466 |
return answer_language
|
| 467 |
|
| 468 |
|
| 469 |
+
def process_question_with_sequential_citations(agents_dict, question: str, chunks_directory="./data/") -> dict:
|
| 470 |
"""
|
| 471 |
+
Process a question through the RAG pipeline with fallback support and return response with sequential citation numbers.
|
| 472 |
|
| 473 |
Args:
|
| 474 |
+
agents_dict: Dictionary containing standard_agent, fallback_agent, and llm
|
| 475 |
question (str): The user's question
|
| 476 |
chunks_directory (str): Path to the directory containing JSON files
|
| 477 |
|
|
|
|
| 480 |
"response": str, # Response with sequential citation numbers [1], [2], etc.
|
| 481 |
"cited_elements_json": str, # JSON array of cited elements in order
|
| 482 |
"unique_ids": list, # Original source IDs in order
|
| 483 |
+
"citation_mapping": dict, # Mapping from source ID to citation number
|
| 484 |
+
"used_fallback": bool # Whether fallback agent was used
|
| 485 |
}
|
| 486 |
"""
|
| 487 |
+
print(f"\n[LOG] === STARTING QUESTION PROCESSING WITH FALLBACK SUPPORT ===")
|
| 488 |
print(f"[LOG] Question: '{question[:150]}{'...' if len(question) > 150 else ''}'")
|
| 489 |
print(f"[LOG] Chunks directory: {chunks_directory}")
|
| 490 |
start_time = time.time()
|
| 491 |
|
| 492 |
+
used_fallback = False
|
| 493 |
+
|
| 494 |
try:
|
| 495 |
+
# Get the response using the enhanced process_question function
|
| 496 |
+
response_text = process_question(agents_dict, question)
|
|
|
|
|
|
|
| 497 |
|
| 498 |
+
# Check if this looks like a fallback was used (simple heuristic)
|
| 499 |
+
if "fallback" in response_text.lower() or len(response_text) < 50:
|
| 500 |
+
used_fallback = True
|
| 501 |
+
print("[LOG] π‘οΈ Fallback agent was likely used")
|
|
|
|
|
|
|
| 502 |
|
| 503 |
agent_time = time.time() - start_time
|
| 504 |
print(f"[LOG] Agent processing completed in {agent_time:.2f} seconds")
|
| 505 |
print(f"[LOG] Raw response length: {len(response_text)} characters")
|
| 506 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 507 |
# Extract source IDs from the response (preserving order)
|
| 508 |
unique_ids = extract_source_ids(response_text)
|
| 509 |
|
|
|
|
| 562 |
|
| 563 |
# Convert to JSON
|
| 564 |
cited_elements_json = json.dumps(cited_elements_ordered, ensure_ascii=False, indent=2)
|
| 565 |
+
answer_language = aswer_language_detection(response_text)
|
| 566 |
|
| 567 |
total_time = time.time() - start_time
|
| 568 |
print(f"[LOG] β
Processing completed in {total_time:.2f} seconds total")
|
| 569 |
print(f"[LOG] Final response length: {len(sequential_response)} characters")
|
| 570 |
+
print(f"[LOG] Used fallback: {used_fallback}")
|
| 571 |
print(f"[LOG] === QUESTION PROCESSING COMPLETED ===\n")
|
| 572 |
|
| 573 |
return {
|
|
|
|
| 575 |
"cited_elements_json": cited_elements_json,
|
| 576 |
"unique_ids": unique_ids,
|
| 577 |
"citation_mapping": source_id_to_number,
|
| 578 |
+
"answer_language": answer_language,
|
| 579 |
+
"used_fallback": used_fallback
|
| 580 |
}
|
| 581 |
|
| 582 |
except Exception as e:
|
|
|
|
| 589 |
"cited_elements_json": "[]",
|
| 590 |
"unique_ids": [],
|
| 591 |
"citation_mapping": {},
|
| 592 |
+
"answer_language": "en",
|
| 593 |
+
"used_fallback": False
|
| 594 |
}
|
| 595 |
|
| 596 |
+
|
| 597 |
+
def process_question_with_citations(agents_dict, question: str, chunks_directory="./data/") -> dict:
|
| 598 |
"""
|
| 599 |
Legacy function - maintained for backward compatibility.
|
| 600 |
+
Now calls the new sequential citation function with fallback support.
|
| 601 |
"""
|
| 602 |
+
print("[LOG] Using legacy function wrapper - redirecting to sequential citations with fallback")
|
| 603 |
+
return process_question_with_sequential_citations(agents_dict, question, chunks_directory)
|