update app
Browse files
app.py
CHANGED
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@@ -20,7 +20,10 @@ from sam2.sam2_image_predictor import SAM2ImagePredictor
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from plm_adapter_lora_with_image_input_only_text_positions import PLMLanguageAdapter
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# ----------------- Configuration -----------------
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SAM2_CONFIG = "sam2_hiera_l.yaml"
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BASE_CKPT_NAME = "sam2_hiera_large.pt"
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@@ -31,24 +34,25 @@ LORA_CKPT_NAME = None
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SQUARE_DIM = 1024
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logging.basicConfig(level=logging.INFO)
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# ----------------- Helper
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def download_if_needed(filename):
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if os.path.exists(filename):
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return filename
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try:
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except Exception as e:
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raise FileNotFoundError(f"Could not find {filename} in
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def _hex_to_rgb(h: str):
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h = h.lstrip("#")
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return tuple(int(h[i : i + 2], 16) for i in (0, 2, 4))
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EDGE_COLORS_HEX = ["#3A86FF", "#FF006E", "#43AA8B", "#F3722C", "#8338EC", "#90BE6D"]
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EDGE_COLORS = [_hex_to_rgb(h) for h in EDGE_COLORS_HEX]
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def stable_color(key: str):
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@@ -58,79 +62,42 @@ def stable_color(key: str):
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def tint(rgb, amt: float = 0.1):
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return tuple(int(255 - (255 - c) * (1 - amt)) for c in rgb)
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def edge_map(mask_bool: np.ndarray, width_px: int = 2) -> Image.Image:
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m = Image.fromarray((mask_bool.astype(np.uint8) * 255), "L")
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edges = ImageChops.difference(m.filter(ImageFilter.MaxFilter(3)), m.filter(ImageFilter.MinFilter(3)))
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for _ in range(max(0, width_px - 1)):
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edges = edges.filter(ImageFilter.MaxFilter(3))
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return edges.point(lambda p: 255 if p > 0 else 0)
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def _apply_rounded_corners(img_rgb: Image.Image, radius: int) -> Image.Image:
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w, h = img_rgb.size
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mask = Image.new("L", (w, h), 0)
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ImageDraw.Draw(mask).rounded_rectangle([0, 0, w - 1, h - 1], radius=radius, fill=255)
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bg = Image.new("RGB", (w, h), "white")
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img_rgba = img_rgb.convert("RGBA")
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img_rgba.putalpha(mask)
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bg.paste(img_rgba.convert("RGB"), (0, 0), mask)
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return bg
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def make_overlay(rgb: np.ndarray, mask: np.ndarray, key: str = "mask") -> Image.Image:
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base = Image.fromarray(rgb.astype(np.uint8)).convert("RGB")
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H, W = mask.shape[:2]
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if base.size != (W, H):
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base = base.resize((W, H), Image.BICUBIC)
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base_rgba = base.convert("RGBA")
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mask_bool = mask > 0
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color = stable_color(key)
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fill_rgb = tint(color, 0.1)
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fill_alpha = Image.fromarray((mask_bool.astype(np.uint8) * 178), "L")
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fill_layer.putalpha(fill_alpha)
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edgesL = edge_map(mask_bool, width_px=2)
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stroke = Image.new("RGBA", base_rgba.size, color + (0,))
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stroke.putalpha(edgesL)
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out = Image.alpha_composite(base_rgba, fill_layer)
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out = Image.alpha_composite(out, stroke)
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return _apply_rounded_corners(out.convert("RGB"), max(12, int(0.06 * min(out.size))))
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scale = float(max_dim) / float(max(h, w))
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new_w, new_h = max(1, int(round(w * scale))), max(1, int(round(h * scale)))
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interp = cv2.INTER_NEAREST if is_mask else (cv2.INTER_AREA if scale < 1.0 else cv2.INTER_LINEAR)
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arr = cv2.resize(arr, (new_w, new_h), interpolation=interp)
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pad_w, pad_h = max_dim - new_w, max_dim - new_h
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left, top = pad_w // 2, pad_h // 2
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return np.ascontiguousarray(cv2.copyMakeBorder(arr, top, pad_h - top, left, pad_w - left, cv2.BORDER_CONSTANT, value=0))
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def _resize_pad_square_meta(h: int, w: int, max_dim: int):
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scale = float(max_dim) / float(max(h, w))
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new_w, new_h = max(1, int(round(w * scale))), max(1, int(round(h * scale)))
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return {"scale": scale, "new_w": new_w, "new_h": new_h, "left": (max_dim - new_w) // 2, "top": (max_dim - new_h) // 2}
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def _unpad_and_resize_pred_to_gt(logit_sq: torch.Tensor, meta: dict, out_hw: tuple[int, int]) -> torch.Tensor:
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top, left = meta["top"], meta["left"]
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nh, nw = meta["new_h"], meta["new_w"]
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crop = logit_sq[top : top + nh, left : left + nw].unsqueeze(0).unsqueeze(0)
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return F.interpolate(crop, size=out_hw, mode="bilinear", align_corners=False)[0, 0]
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return
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model = build_sam2(SAM2_CONFIG, base_path, device="cpu")
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sd = torch.load(final_path, map_location="cpu")
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model.load_state_dict(sd.get("model", sd), strict=True)
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plm = PLMLanguageAdapter(
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model_name="Qwen/Qwen2.5-VL-3B-Instruct",
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transformer_dim=model.sam_mask_decoder.transformer_dim,
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@@ -138,99 +105,118 @@ def ensure_models_loaded_on_cpu():
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lora_r=16, lora_alpha=32, lora_dropout=0.05,
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dtype=torch.bfloat16, device="cpu",
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)
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plm_path = download_if_needed(PLM_CKPT_NAME)
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plm_sd = torch.load(plm_path, map_location="cpu")
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plm.load_state_dict(plm_sd["plm"], strict=True)
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plm.eval()
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PLM_CPU = plm
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@spaces.GPU(duration=120)
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def run_prediction(image_pil, text_prompt, threshold):
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if image_pil is None or not text_prompt:
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return None, None
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predictor = None
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try:
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)
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logits_sq = predictor._transforms.postprocess_masks(low, (SQUARE_DIM, SQUARE_DIM))
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logit_gt = _unpad_and_resize_pred_to_gt(logits_sq[0, scores.argmax(dim=1).item()], meta, (Hgt, Wgt))
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# 1. Calculate Probabilities (Heatmap)
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prob = torch.sigmoid(logit_gt).cpu().numpy()
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# 2. Apply dynamic threshold for overlay
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mask = (prob > threshold).astype(np.uint8) * 255
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overlay_img = make_overlay(rgb_orig, mask, key=text_prompt)
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# Scale 0.0-1.0 to 0-255
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prob_uint8 = (prob * 255).astype(np.uint8)
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heatmap_color = cv2.applyColorMap(prob_uint8, cv2.COLORMAP_JET)
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heatmap_color = cv2.cvtColor(heatmap_color, cv2.COLOR_BGR2RGB)
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heatmap_pil = Image.fromarray(heatmap_color)
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return overlay_img, heatmap_pil
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except Exception
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traceback.print_exc()
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finally:
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if predictor: del predictor
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torch.cuda.empty_cache()
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# ----------------- Gradio UI -----------------
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with gr.Blocks(title="SAM2 + PLM Segmentation") as demo:
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gr.Markdown("# SAM2 + PLM Interactive Segmentation")
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with gr.Row():
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with gr.Column():
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input_image = gr.Image(type="pil", label="Input Image")
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text_prompt = gr.Textbox(label="Text Prompt", placeholder="e.g., 'the
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with gr.Column():
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out_overlay = gr.Image(label="Segmentation Overlay", type="pil")
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out_heatmap = gr.Image(label="Probability Heatmap", type="pil")
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run_btn.click(
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fn=run_prediction,
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inputs=[input_image, text_prompt, threshold_slider],
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outputs=[out_overlay, out_heatmap]
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)
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from plm_adapter_lora_with_image_input_only_text_positions import PLMLanguageAdapter
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# ----------------- Configuration -----------------
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REPO_MAP = {
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"Stage 1": "aadarsh99/ConvSeg-Stage1",
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"Stage 2": "aadarsh99/ConvSeg-Stage2"
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}
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SAM2_CONFIG = "sam2_hiera_l.yaml"
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BASE_CKPT_NAME = "sam2_hiera_large.pt"
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SQUARE_DIM = 1024
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logging.basicConfig(level=logging.INFO)
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# ----------------- Globals (Ram Cache) -----------------
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MODEL_CACHE = {
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"Stage 1": {"sam": None, "plm": None},
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"Stage 2": {"sam": None, "plm": None}
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}
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# ----------------- Helper: Download Logic -----------------
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def download_if_needed(repo_id, filename):
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logging.info(f"Downloading {filename} from {repo_id}...")
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return hf_hub_download(repo_id=repo_id, filename=filename)
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except Exception as e:
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raise FileNotFoundError(f"Could not find {filename} in {repo_id}. Error: {e}")
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# ----------------- Overlay & Heatmap Helpers -----------------
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EDGE_COLORS_HEX = ["#3A86FF", "#FF006E", "#43AA8B", "#F3722C", "#8338EC", "#90BE6D"]
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def _hex_to_rgb(h: str):
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h = h.lstrip("#")
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return tuple(int(h[i : i + 2], 16) for i in (0, 2, 4))
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EDGE_COLORS = [_hex_to_rgb(h) for h in EDGE_COLORS_HEX]
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def stable_color(key: str):
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def tint(rgb, amt: float = 0.1):
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return tuple(int(255 - (255 - c) * (1 - amt)) for c in rgb)
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def make_overlay(rgb: np.ndarray, mask: np.ndarray, key: str = "mask") -> Image.Image:
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base = Image.fromarray(rgb.astype(np.uint8)).convert("RGB")
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base_rgba = base.convert("RGBA")
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mask_bool = mask > 0
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color = stable_color(key)
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fill_rgb = tint(color, 0.1)
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fill_layer = Image.new("RGBA", base.size, fill_rgb + (0,))
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fill_alpha = Image.fromarray((mask_bool.astype(np.uint8) * 178), "L")
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fill_layer.putalpha(fill_alpha)
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m = Image.fromarray((mask_bool.astype(np.uint8) * 255), "L")
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edges = ImageChops.difference(m.filter(ImageFilter.MaxFilter(3)), m.filter(ImageFilter.MinFilter(3)))
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stroke = Image.new("RGBA", base.size, color + (0,))
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stroke.putalpha(edges)
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out = Image.alpha_composite(base_rgba, fill_layer)
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out = Image.alpha_composite(out, stroke)
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return out.convert("RGB")
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# ----------------- Model Loading (CPU Caching) -----------------
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def ensure_models_loaded(stage):
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global MODEL_CACHE
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if MODEL_CACHE[stage]["sam"] is not None:
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return
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repo_id = REPO_MAP[stage]
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logging.info(f"Loading {stage} models from {repo_id}...")
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base_path = download_if_needed(repo_id, BASE_CKPT_NAME)
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model = build_sam2(SAM2_CONFIG, base_path, device="cpu")
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final_path = download_if_needed(repo_id, FINAL_CKPT_NAME)
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sd = torch.load(final_path, map_location="cpu")
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model.load_state_dict(sd.get("model", sd), strict=True)
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plm = PLMLanguageAdapter(
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model_name="Qwen/Qwen2.5-VL-3B-Instruct",
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transformer_dim=model.sam_mask_decoder.transformer_dim,
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lora_r=16, lora_alpha=32, lora_dropout=0.05,
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dtype=torch.bfloat16, device="cpu",
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plm_path = download_if_needed(repo_id, PLM_CKPT_NAME)
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plm_sd = torch.load(plm_path, map_location="cpu")
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plm.load_state_dict(plm_sd["plm"], strict=True)
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plm.eval()
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MODEL_CACHE[stage]["sam"] = model
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MODEL_CACHE[stage]["plm"] = plm
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def _resize_pad_square(arr, max_dim):
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h, w = arr.shape[:2]
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scale = float(max_dim) / float(max(h, w))
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nw, nh = max(1, int(round(w * scale))), max(1, int(round(h * scale)))
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arr = cv2.resize(arr, (nw, nh), interpolation=cv2.INTER_LINEAR)
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pad_w, pad_h = max_dim - nw, max_dim - nh
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return cv2.copyMakeBorder(arr, pad_h//2, pad_h-pad_h//2, pad_w//2, pad_w-pad_w//2, cv2.BORDER_CONSTANT, value=0)
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# ----------------- Main Prediction -----------------
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@spaces.GPU(duration=120)
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def run_prediction(image_pil, text_prompt, threshold, stage_choice):
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if image_pil is None or not text_prompt:
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return None, None
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ensure_models_loaded(stage_choice)
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sam_model = MODEL_CACHE[stage_choice]["sam"]
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plm_model = MODEL_CACHE[stage_choice]["plm"]
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sam_model.to("cuda")
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plm_model.to("cuda")
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try:
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# 1. Use Inference Mode to avoid grad errors and save memory
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with torch.inference_mode():
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predictor = SAM2ImagePredictor(sam_model)
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rgb_orig = np.array(image_pil.convert("RGB"))
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Hgt, Wgt = rgb_orig.shape[:2]
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+
|
| 144 |
+
# Setup crop/padding metadata
|
| 145 |
+
scale = SQUARE_DIM / max(Hgt, Wgt)
|
| 146 |
+
nw, nh = int(Wgt * scale), int(Hgt * scale)
|
| 147 |
+
top, left = (SQUARE_DIM - nh) // 2, (SQUARE_DIM - nw) // 2
|
| 148 |
+
|
| 149 |
+
rgb_sq = _resize_pad_square(rgb_orig, SQUARE_DIM)
|
| 150 |
+
predictor.set_image(rgb_sq)
|
| 151 |
+
|
| 152 |
+
image_emb = predictor._features["image_embed"][-1].unsqueeze(0)
|
| 153 |
+
hi = [lvl[-1].unsqueeze(0) for lvl in predictor._features["high_res_feats"]]
|
| 154 |
+
|
| 155 |
+
# PLM Inference
|
| 156 |
+
temp_path = "temp_input.jpg"
|
| 157 |
+
image_pil.save(temp_path)
|
| 158 |
+
sp, dp = plm_model([text_prompt], image_emb.shape[2], image_emb.shape[3], [temp_path])
|
| 159 |
+
|
| 160 |
+
# SAM2 Decoding
|
| 161 |
+
dec = predictor.model.sam_mask_decoder
|
| 162 |
+
dev, dtype = next(dec.parameters()).device, next(dec.parameters()).dtype
|
| 163 |
+
low, scores, _, _ = dec(
|
| 164 |
+
image_embeddings=image_emb.to(dev, dtype),
|
| 165 |
+
image_pe=predictor.model.sam_prompt_encoder.get_dense_pe().to(dev, dtype),
|
| 166 |
+
sparse_prompt_embeddings=sp.to(dev, dtype),
|
| 167 |
+
dense_prompt_embeddings=dp.to(dev, dtype),
|
| 168 |
+
multimask_output=True, repeat_image=False,
|
| 169 |
+
high_res_features=[h.to(dev, dtype) for h in hi],
|
| 170 |
+
)
|
| 171 |
|
| 172 |
+
# Postprocess to full image size
|
| 173 |
+
logits_sq = predictor._transforms.postprocess_masks(low, (SQUARE_DIM, SQUARE_DIM))
|
| 174 |
+
best_idx = scores.argmax(dim=1).item()
|
| 175 |
+
logit_crop = logits_sq[0, best_idx, top:top+nh, left:left+nw].unsqueeze(0).unsqueeze(0)
|
| 176 |
+
logit_full = F.interpolate(logit_crop, size=(Hgt, Wgt), mode="bilinear", align_corners=False)[0, 0]
|
| 177 |
+
|
| 178 |
+
# FIX: Detach and convert to float before moving to cpu/numpy
|
| 179 |
+
prob = torch.sigmoid(logit_full).float().detach().cpu().numpy()
|
| 180 |
+
|
| 181 |
+
# 2. Visualizations
|
| 182 |
+
heatmap_cv = cv2.applyColorMap((prob * 255).astype(np.uint8), cv2.COLORMAP_JET)
|
| 183 |
+
heatmap_rgb = cv2.cvtColor(heatmap_cv, cv2.COLOR_BGR2RGB)
|
|
|
|
|
|
|
| 184 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| 185 |
mask = (prob > threshold).astype(np.uint8) * 255
|
| 186 |
overlay_img = make_overlay(rgb_orig, mask, key=text_prompt)
|
| 187 |
|
| 188 |
+
return overlay_img, Image.fromarray(heatmap_rgb)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 189 |
|
| 190 |
+
except Exception:
|
| 191 |
traceback.print_exc()
|
| 192 |
+
return None, None
|
| 193 |
finally:
|
| 194 |
+
sam_model.to("cpu")
|
| 195 |
+
plm_model.to("cpu")
|
|
|
|
| 196 |
torch.cuda.empty_cache()
|
| 197 |
|
| 198 |
# ----------------- Gradio UI -----------------
|
| 199 |
+
with gr.Blocks(title="SAM2 + PLM Multi-Stage") as demo:
|
|
|
|
| 200 |
gr.Markdown("# SAM2 + PLM Interactive Segmentation")
|
| 201 |
|
| 202 |
with gr.Row():
|
| 203 |
with gr.Column():
|
| 204 |
input_image = gr.Image(type="pil", label="Input Image")
|
| 205 |
+
text_prompt = gr.Textbox(label="Text Prompt", placeholder="e.g., 'the surgical tool'")
|
| 206 |
+
|
| 207 |
+
with gr.Row():
|
| 208 |
+
stage_select = gr.Radio(choices=["Stage 1", "Stage 2"], value="Stage 1", label="Model Stage")
|
| 209 |
+
threshold_slider = gr.Slider(0.0, 1.0, value=0.5, step=0.01, label="Confidence Threshold")
|
| 210 |
+
|
| 211 |
+
run_btn = gr.Button("Run Inference", variant="primary")
|
| 212 |
|
| 213 |
with gr.Column():
|
| 214 |
out_overlay = gr.Image(label="Segmentation Overlay", type="pil")
|
| 215 |
+
out_heatmap = gr.Image(label="Pixel-wise Probability Heatmap", type="pil")
|
| 216 |
|
| 217 |
run_btn.click(
|
| 218 |
fn=run_prediction,
|
| 219 |
+
inputs=[input_image, text_prompt, threshold_slider, stage_select],
|
| 220 |
outputs=[out_overlay, out_heatmap]
|
| 221 |
)
|
| 222 |
|