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Update app.py
Browse files
app.py
CHANGED
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@@ -6,11 +6,10 @@ import random
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import re
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# Load model and tokenizer
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# model_name = "rgb2gbr/GRPO_BioMedmcqa_Qwen2.5-0.5B"
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model_name = "rgb2gbr/BioXP-0.5B-MedMCQA"
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SYSTEM_PROMPT = """
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You
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Respond in the following format:
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<answer>
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[correct answer]
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@@ -45,15 +44,32 @@ def get_random_question():
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question_data.get('exp', None) # Explanation
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)
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def predict(question: str, option_a: str, option_b: str, option_c: str, option_d: str,
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correct_option: int = None, explanation: str = None,
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temperature: float = 0.6, top_p: float = 0.9, max_tokens: int = 256):
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# Create chat-style prompt
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prompt = [
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{'role': 'system', 'content':
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{'role': 'user', 'content': formatted_question}
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]
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@@ -69,20 +85,23 @@ def predict(question: str, option_a: str, option_b: str, option_c: str, option_d
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max_new_tokens=max_tokens,
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temperature=temperature,
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top_p=top_p,
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# repetition_penalty=1.1,
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)
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# Get only the generated response
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generated_ids = generated_ids[0, model_inputs.input_ids.shape[1]:]
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model_response = tokenizer.decode(generated_ids, skip_special_tokens=True)
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#
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if
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model_answer = answer_match.group(1).upper() if answer_match else "Not found"
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is_correct = model_answer == correct_letter
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@@ -95,61 +114,106 @@ def predict(question: str, option_a: str, option_b: str, option_c: str, option_d
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return output
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# Create Gradio interface with
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with gr.Blocks(
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gr.
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with gr.Row():
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with gr.Column():
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# Input fields
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question = gr.Textbox(
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# Options in
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with gr.Accordion("Options", open=
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option_a = gr.Textbox(
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step=0.1,
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label="Temperature",
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info="Higher values make output more random, lower values more focused"
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)
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-
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label="Top P",
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info="Higher values allow more diverse tokens, lower values more focused"
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)
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max_tokens = gr.Slider(
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minimum=50,
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maximum=512,
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value=256,
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step=32,
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label="Max
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info="Maximum length of the
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)
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# Hidden fields
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correct_option = gr.Number(visible=False)
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expert_explanation = gr.Textbox(visible=False)
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# Buttons
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with gr.Row():
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predict_btn = gr.Button("
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random_btn = gr.Button("
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# Set up button actions
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predict_btn.click(
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@@ -168,6 +232,76 @@ with gr.Blocks(title="Medical-QA (MedMCQA) Predictor") as demo:
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outputs=[question, option_a, option_b, option_c, option_d, correct_option, expert_explanation]
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)
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# Launch the app
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if __name__ == "__main__":
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demo.launch()
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import re
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# Load model and tokenizer
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model_name = "rgb2gbr/BioXP-0.5B-MedMCQA"
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SYSTEM_PROMPT = """
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You are a medical expert. Answer the medical question with careful analysis and explain why the selected option is correct in 200 words without repeating.
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Respond in the following format:
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<answer>
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[correct answer]
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question_data.get('exp', None) # Explanation
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)
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def predict(question: str, option_a: str = "", option_b: str = "", option_c: str = "", option_d: str = "",
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correct_option: int = None, explanation: str = None,
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temperature: float = 0.6, top_p: float = 0.9, max_tokens: int = 256):
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# Determine if this is an MCQ by checking if any option is provided
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# Only treat as MCQ if at least one option is non-empty
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is_mcq = any(opt.strip() for opt in [option_a, option_b, option_c, option_d])
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if is_mcq:
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# Format MCQ question with only non-empty options
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options = []
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if option_a.strip(): options.append(f"A. {option_a}")
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if option_b.strip(): options.append(f"B. {option_b}")
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if option_c.strip(): options.append(f"C. {option_c}")
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if option_d.strip(): options.append(f"D. {option_d}")
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formatted_question = f"Question: {question}\n\nOptions:\n" + "\n".join(options)
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system_prompt = SYSTEM_PROMPT
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else:
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# Format regular question
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formatted_question = f"Question: {question}"
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system_prompt = SYSTEM_PROMPT
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# Create chat-style prompt
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prompt = [
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{'role': 'system', 'content': system_prompt},
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{'role': 'user', 'content': formatted_question}
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]
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max_new_tokens=max_tokens,
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temperature=temperature,
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top_p=top_p,
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)
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# Get only the generated response
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generated_ids = generated_ids[0, model_inputs.input_ids.shape[1]:]
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model_response = tokenizer.decode(generated_ids, skip_special_tokens=True)
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# Clean up the response by removing tags and formatting
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cleaned_response = model_response
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cleaned_response = re.sub(r'<answer>\s*([A-D])\s*</answer>', r'Answer: \1', cleaned_response, flags=re.IGNORECASE)
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cleaned_response = re.sub(r'<reasoning>\s*(.*?)\s*</reasoning>', r'Reasoning:\n\1', cleaned_response, flags=re.IGNORECASE | re.DOTALL)
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# Format output with evaluation if available (only for MCQs)
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output = cleaned_response
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if is_mcq and correct_option is not None:
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correct_letter = chr(65 + correct_option)
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answer_match = re.search(r"Answer:\s*([A-D])", cleaned_response, re.IGNORECASE)
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model_answer = answer_match.group(1).upper() if answer_match else "Not found"
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is_correct = model_answer == correct_letter
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return output
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# Create Gradio interface with mobile-optimized design
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with gr.Blocks(
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title="BioXP Medical MCQ Assistant",
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theme=gr.themes.Soft(
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primary_hue="blue",
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secondary_hue="blue",
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neutral_hue="slate",
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radius_size="md",
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font=["Inter", "ui-sans-serif", "system-ui", "sans-serif"],
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)
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) as demo:
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gr.Markdown("""
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# BioXP Medical MCQ Assistant
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A specialized AI assistant for medical multiple-choice questions.
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""")
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with gr.Row():
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with gr.Column(scale=1):
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# Input fields with mobile-friendly spacing
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question = gr.Textbox(
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label="Medical Question",
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placeholder="Enter your medical question here...",
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lines=3,
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interactive=True,
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elem_classes=["mobile-input"]
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)
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# Options in a mobile-friendly accordion
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with gr.Accordion("Options", open=True):
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option_a = gr.Textbox(
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label="Option A",
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placeholder="Enter option A...",
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interactive=True,
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elem_classes=["mobile-input"]
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)
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option_b = gr.Textbox(
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label="Option B",
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placeholder="Enter option B...",
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interactive=True,
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elem_classes=["mobile-input"]
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)
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option_c = gr.Textbox(
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label="Option C",
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placeholder="Enter option C...",
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interactive=True,
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elem_classes=["mobile-input"]
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)
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option_d = gr.Textbox(
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label="Option D",
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placeholder="Enter option D...",
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interactive=True,
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elem_classes=["mobile-input"]
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)
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# Generation parameters in a collapsible section
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with gr.Accordion("Advanced Settings", open=False):
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with gr.Row():
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with gr.Column(scale=1):
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temperature = gr.Slider(
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minimum=0.1,
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maximum=1.0,
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value=0.6,
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step=0.1,
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label="Temperature",
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info="Higher = more creative, Lower = more focused"
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)
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with gr.Column(scale=1):
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top_p = gr.Slider(
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minimum=0.1,
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maximum=1.0,
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value=0.9,
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step=0.1,
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label="Top P",
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info="Controls response diversity"
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)
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max_tokens = gr.Slider(
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minimum=50,
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maximum=512,
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value=256,
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step=32,
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label="Max Response Length",
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info="Maximum length of the response"
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)
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# Hidden fields
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correct_option = gr.Number(visible=False)
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expert_explanation = gr.Textbox(visible=False)
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# Buttons with mobile-friendly spacing
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with gr.Row():
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predict_btn = gr.Button("Get Answer", variant="primary", size="lg", elem_classes=["mobile-button"])
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random_btn = gr.Button("Random Question", variant="secondary", size="lg", elem_classes=["mobile-button"])
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with gr.Column(scale=1):
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# Output with mobile-friendly styling
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output = gr.Textbox(
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label="Model's Response",
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lines=12,
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elem_classes=["response-box", "mobile-output"]
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)
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# Set up button actions
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predict_btn.click(
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outputs=[question, option_a, option_b, option_c, option_d, correct_option, expert_explanation]
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)
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# Add mobile-optimized CSS
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gr.HTML("""
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<style>
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/* Mobile-friendly base styles */
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.container {
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max-width: 100%;
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padding: 0.5rem;
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}
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/* Input styling */
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.mobile-input textarea {
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font-size: 1rem;
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padding: 0.75rem;
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border-radius: 0.5rem;
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min-height: 2.5rem;
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}
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/* Button styling */
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.mobile-button {
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width: 100%;
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margin: 0.5rem 0;
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padding: 0.75rem;
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font-size: 1rem;
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font-weight: 500;
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}
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/* Response box styling */
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.response-box {
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font-family: 'Inter', sans-serif;
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line-height: 1.6;
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}
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.response-box textarea {
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font-size: 1rem;
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padding: 1rem;
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border-radius: 0.5rem;
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}
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/* Mobile-specific adjustments */
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@media (max-width: 768px) {
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.gr-form {
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padding: 0.75rem;
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}
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.gr-box {
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margin: 0.5rem 0;
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}
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.gr-button {
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min-height: 2.5rem;
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}
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.gr-accordion {
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margin: 0.5rem 0;
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}
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.gr-input {
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margin-bottom: 0.5rem;
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}
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}
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/* Dark mode support */
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@media (prefers-color-scheme: dark) {
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.gr-box {
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background-color: #1a1a1a;
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}
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.mobile-input textarea,
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.response-box textarea {
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background-color: #2a2a2a;
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color: #ffffff;
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}
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}
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</style>
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""")
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# Launch the app
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if __name__ == "__main__":
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demo.launch(share=False)
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