TxAgentCrowdsourcingEval / tool_lists /monarch_tools.json
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[
{
"name": "get_joint_associated_diseases_by_HPO_ID_list",
"description": "Retrieve diseases associated with a list of phenotypes or symptoms by a list of HPO IDs.",
"parameter": {
"type": "object",
"properties": {
"HPO_ID_list": {
"type": "array",
"description": "List of phenotypes or symptoms",
"items": {
"type": "string",
"description": "The HPO ID of the phenotype or symptom.",
"required": true
},
"required": true
},
"limit": {
"type": "integer",
"description": "Number of entries to fetch.",
"required": false
},
"offset": {
"type": "integer",
"description": "Number of initial entries to skip.",
"required": false
}
}
},
"query_schema": {
"category": [
"biolink:DiseaseToPhenotypicFeatureAssociation"
],
"object": null,
"compact": true,
"object_category": [
"biolink:PhenotypicFeature"
],
"limit": 500,
"offset": 0
},
"label": [
"Monarch",
"Phenotype",
"Symptom",
"Disease",
"HPO_ID"
],
"type": "MonarchDiseasesForMultiplePheno",
"tool_url": "/association"
},
{
"name": "get_phenotype_by_HPO_ID",
"description": "Retrieve a phenotype or symptom by its HPO ID.",
"parameter": {
"type": "object",
"properties": {
"id": {
"type": "string",
"description": "The HPO ID of the phenotype or symptom.",
"required": true
}
}
},
"query_schema": {
"id": null,
"url_key": "id"
},
"label": [
"Monarch",
"Phenotype",
"Symptom",
"HPO_ID"
],
"type": "Monarch",
"tool_url": "/entity/{url_key}"
},
{
"name": "get_HPO_ID_by_phenotype",
"description": "Retrieve the HPO ID of a phenotype or symptom.",
"parameter": {
"type": "object",
"properties": {
"query": {
"type": "string",
"description": "One query phenotype or symptom.",
"required": true
},
"limit": {
"type": "integer",
"description": "Number of entries to fetch.",
"required": false
},
"offset": {
"type": "integer",
"description": "Number of initial entries to skip.",
"required": false
}
}
},
"query_schema": {
"query": null,
"category": [
"biolink:PhenotypicFeature"
],
"limit": 20,
"offset": 0
},
"label": [
"Monarch",
"Phenotype",
"Symptom",
"HPO_ID"
],
"type": "Monarch",
"tool_url": "/search"
}
]