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Upload 5 files
Browse files- Dockerfile +35 -0
- api.py +197 -0
- config.py +1 -0
- crop_disease_qa.json +154 -0
- requirements.txt +9 -0
Dockerfile
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FROM python:3.11-slim
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WORKDIR /app
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# Install system dependencies
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RUN apt-get update && apt-get install -y --no-install-recommends \
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libgl1 \
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libglib2.0-0 \
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&& rm -rf /var/lib/apt/lists/*
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# Create directories
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RUN mkdir -p chroma_crop_rag /app/data && chmod -R 777 chroma_crop_rag /app/data
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# Set HF_HOME
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ENV HF_HOME=/app/cache
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# Copy data folder and other files
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COPY chroma_crop_rag /app/data
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COPY requirements.txt /app/
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COPY api.py /app/
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# COPY engine.py /app/
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# COPY futureWeather.py /app/
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COPY config.py /app/
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COPY crop_disease_qa.json /app/
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# Install dependencies
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RUN pip install python-multipart
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RUN pip install --no-cache-dir -r requirements.txt
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# Debug: List files to verify
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RUN ls -la /app/data
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EXPOSE 7860
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CMD ["python", "api.py"]
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api.py
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import collections
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from collections.abc import MutableMapping
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collections.MutableMapping = MutableMapping # Patch for deprecated MutableMapping
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import os
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import shutil
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import json
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import logging
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from contextlib import asynccontextmanager
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from typing import Dict
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from fastapi import FastAPI, HTTPException
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from fastapi.responses import JSONResponse
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from fastapi.middleware.cors import CORSMiddleware
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from pydantic import BaseModel
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from langchain.chat_models import init_chat_model
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from langchain_core.documents import Document
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from langchain_core.prompts import PromptTemplate
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from langchain_text_splitters import RecursiveCharacterTextSplitter
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from langchain_community.vectorstores import Chroma
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from langchain_huggingface import HuggingFaceEmbeddings
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from langchain.chains import RetrievalQA
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import config # Ensure config.py has GROQ_API_KEY
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# Set environment variable for Groq API key
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os.environ["GROQ_API_KEY"] = config.GROQ_API_KEY
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# Setup logging
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logging.basicConfig(level=logging.DEBUG, format="%(asctime)s - %(levelname)s - %(message)s")
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logger = logging.getLogger(__name__)
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# Global variables for RAG components
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rag_chain = None
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retriever = None
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session_states: Dict[str, str] = {} # Store last_disease per session_id
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@asynccontextmanager
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async def lifespan(app: FastAPI):
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global rag_chain, retriever
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persist_directory = "/data/chroma_crop_rag"
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# Clear existing ChromaDB collection
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if os.path.exists(persist_directory):
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try:
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shutil.rmtree(persist_directory)
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logger.debug("Cleared existing ChromaDB directory: %s", persist_directory)
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except Exception as e:
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logger.error("Error clearing ChromaDB directory: %s", str(e))
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raise
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# Load JSON QA Knowledge Base
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try:
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with open("crop_disease_qa.json", "r", encoding="utf-8") as f:
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data = json.load(f)
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logger.debug("JSON loaded, length: %d", len(data))
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except Exception as e:
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logger.error("Error loading JSON: %s", str(e))
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raise
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# Convert to Documents
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documents = [
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Document(page_content=item["answer"], metadata={"question": item["question"]})
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for item in data
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]
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logger.debug("Documents created: %d", len(documents))
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# Chunk Documents
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splitter = RecursiveCharacterTextSplitter(chunk_size=300, chunk_overlap=100)
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docs = splitter.split_documents(documents)
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logger.debug("Documents after splitting: %d", len(docs))
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# Embedding + Vectorstore
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try:
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embedding_model = HuggingFaceEmbeddings(model_name="sentence-transformers/all-mpnet-base-v2")
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logger.debug("Embedding model initialized")
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db = Chroma.from_documents(docs, embedding_model, persist_directory=persist_directory)
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retriever = db.as_retriever(search_type="similarity", search_kwargs={"k": 6})
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logger.debug("ChromaDB initialized")
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except Exception as e:
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logger.error("ChromaDB/Embedding error: %s", str(e))
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raise
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# Groq LLM
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try:
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llm = init_chat_model(
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"llama3-8b-8192",
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model_provider="groq",
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temperature=0.5
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)
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logger.debug("Groq LLM initialized")
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except Exception as e:
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logger.error("Groq LLM initialization error: %s", str(e))
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raise
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# Prompt Template
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prompt_template = PromptTemplate(
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input_variables=["context", "question"],
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template="""
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You're a friendly agricultural expert helping farmers with crop health.
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Answer in a warm, conversational tone, like you're chatting with a neighbor.
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Keep it clear, engaging, and avoid overly technical terms.
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Use the provided context from the knowledge base to ensure accuracy.
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If the question is a follow-up (e.g., 'how to treat them?', 'how to fix it?', 'what medicines should I use?'),
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assume it refers to the previously discussed disease or crop (e.g., Early blight in Potato) unless specified otherwise.
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If the context doesn't cover the question, provide a practical, general response with actionable tips.
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make sure the aize of the answer is not more than 100 words.
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Context: {context}
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Question: {question}
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Answer:
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"""
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)
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# RAG Chain
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try:
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rag_chain = RetrievalQA.from_chain_type(
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llm=llm,
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retriever=retriever,
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chain_type="stuff",
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chain_type_kwargs={"prompt": prompt_template}
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)
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logger.debug("RAG chain initialized")
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except Exception as e:
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logger.error("RAG chain initialization error: %s", str(e))
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raise
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yield # FastAPI is now running
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# Initialize FastAPI with lifespan
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app = FastAPI(title="Crop Health Assistant API", lifespan=lifespan)
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# Add CORS middleware
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app.add_middleware(
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CORSMiddleware,
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allow_origins=["*"], # Allows all origins
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allow_credentials=True,
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allow_methods=["*"], # Allows all methods
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allow_headers=["*"], # Allows all headers
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)
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# Pydantic request model
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class QueryRequest(BaseModel):
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query: str
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session_id: str = "default"
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# Query endpoint
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@app.post("/query")
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async def query_crop_health(request: QueryRequest):
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global session_states
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query = request.query
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session_id = request.session_id
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if query.lower() == "exit":
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session_states.pop(session_id, None)
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return JSONResponse(content={"message": "Session ended"})
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# Handle follow-up queries
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modified_query = query
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last_disease = session_states.get(session_id)
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if last_disease and query.lower() in [
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"how to treat them?", "how to fix it?",
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"how to manage it?", "what medicines should i use?"
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]:
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modified_query = f"What medicines or treatments for {last_disease}?"
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try:
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response = rag_chain.invoke({"query": modified_query})["result"]
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# Simple heuristic to update last disease
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if "blight" in query.lower() or "potato" in query.lower():
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session_states[session_id] = "Early blight in Potato"
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return JSONResponse(content={"question": query, "answer": response})
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except Exception as e:
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logger.error("RAG chain execution error for query '%s': %s", query, str(e))
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raise HTTPException(status_code=500, detail=f"Error processing query: {str(e)}")
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# Session reset endpoint
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@app.delete("/reset-session/{session_id}")
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async def reset_session(session_id: str):
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global session_states
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session_states.pop(session_id, None)
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return JSONResponse(content={"message": f"Session {session_id} reset"})
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# Run FastAPI with Uvicorn
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if __name__ == "__main__":
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import uvicorn
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print("Starting FastAPI server")
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uvicorn.run(app, host="0.0.0.0", port=7860)
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config.py
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GROQ_API_KEY="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"
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crop_disease_qa.json
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| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"question": "What is Apple scab in Apple?",
|
| 4 |
+
"answer": "Apple scab is a disease that affects Apple crops. Proper identification and treatment is essential to manage it."
|
| 5 |
+
},
|
| 6 |
+
{
|
| 7 |
+
"question": "What is Black rot in Apple?",
|
| 8 |
+
"answer": "Black rot is a disease that affects Apple crops. Proper identification and treatment is essential to manage it."
|
| 9 |
+
},
|
| 10 |
+
{
|
| 11 |
+
"question": "What is Cedar apple rust in Apple?",
|
| 12 |
+
"answer": "Cedar apple rust is a disease that affects Apple crops. Proper identification and treatment is essential to manage it."
|
| 13 |
+
},
|
| 14 |
+
{
|
| 15 |
+
"question": "How to keep Apple crops healthy?",
|
| 16 |
+
"answer": "To maintain healthy Apple crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 17 |
+
},
|
| 18 |
+
{
|
| 19 |
+
"question": "How to keep Blueberry crops healthy?",
|
| 20 |
+
"answer": "To maintain healthy Blueberry crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 21 |
+
},
|
| 22 |
+
{
|
| 23 |
+
"question": "How to keep Cherry including sour Powdery mildew crops healthy?",
|
| 24 |
+
"answer": "To maintain healthy Cherry including sour Powdery mildew crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 25 |
+
},
|
| 26 |
+
{
|
| 27 |
+
"question": "How to keep Cherry including sour healthy crops healthy?",
|
| 28 |
+
"answer": "To maintain healthy Cherry including sour healthy crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 29 |
+
},
|
| 30 |
+
{
|
| 31 |
+
"question": "How to keep Corn maize Cercospora leaf spot Gray leaf spot crops healthy?",
|
| 32 |
+
"answer": "To maintain healthy Corn maize Cercospora leaf spot Gray leaf spot crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 33 |
+
},
|
| 34 |
+
{
|
| 35 |
+
"question": "How to keep Corn maizeCommon rust crops healthy?",
|
| 36 |
+
"answer": "To maintain healthy Corn maizeCommon rust crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 37 |
+
},
|
| 38 |
+
{
|
| 39 |
+
"question": "How to keep Corn maize Northern Leaf Blight crops healthy?",
|
| 40 |
+
"answer": "To maintain healthy Corn maize Northern Leaf Blight crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 41 |
+
},
|
| 42 |
+
{
|
| 43 |
+
"question": "How to keep Corn maize healthy crops healthy?",
|
| 44 |
+
"answer": "To maintain healthy Corn maize healthy crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 45 |
+
},
|
| 46 |
+
{
|
| 47 |
+
"question": "What is Black rot in Grape?",
|
| 48 |
+
"answer": "Black rot is a disease that affects Grape crops. Proper identification and treatment is essential to manage it."
|
| 49 |
+
},
|
| 50 |
+
{
|
| 51 |
+
"question": "What is Esca(Black Measles) in Grape?",
|
| 52 |
+
"answer": "Esca(Black Measles) is a disease that affects Grape crops. Proper identification and treatment is essential to manage it."
|
| 53 |
+
},
|
| 54 |
+
{
|
| 55 |
+
"question": "What is Leaf blight(Isariopsis Leaf Spot) in Grape?",
|
| 56 |
+
"answer": "Leaf blight(Isariopsis Leaf Spot) is a disease that affects Grape crops. Proper identification and treatment is essential to manage it."
|
| 57 |
+
},
|
| 58 |
+
{
|
| 59 |
+
"question": "How to keep Grape crops healthy?",
|
| 60 |
+
"answer": "To maintain healthy Grape crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 61 |
+
},
|
| 62 |
+
{
|
| 63 |
+
"question": "What is Haunglongbing(Citrus greening) in Orange?",
|
| 64 |
+
"answer": "Haunglongbing(Citrus greening) is a disease that affects Orange crops. Proper identification and treatment is essential to manage it."
|
| 65 |
+
},
|
| 66 |
+
{
|
| 67 |
+
"question": "What is Bacterial spot in Peach?",
|
| 68 |
+
"answer": "Bacterial spot is a disease that affects Peach crops. Proper identification and treatment is essential to manage it."
|
| 69 |
+
},
|
| 70 |
+
{
|
| 71 |
+
"question": "How to keep Peach crops healthy?",
|
| 72 |
+
"answer": "To maintain healthy Peach crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 73 |
+
},
|
| 74 |
+
{
|
| 75 |
+
"question": "What is Bacterial spot in Pepper,bell?",
|
| 76 |
+
"answer": "Bacterial spot is a disease that affects Pepper,bell crops. Proper identification and treatment is essential to manage it."
|
| 77 |
+
},
|
| 78 |
+
{
|
| 79 |
+
"question": "How to keep Pepper,bell crops healthy?",
|
| 80 |
+
"answer": "To maintain healthy Pepper,bell crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 81 |
+
},
|
| 82 |
+
{
|
| 83 |
+
"question": "What is Early blight in Potato?",
|
| 84 |
+
"answer": "Early blight is a disease that affects Potato crops. Proper identification and treatment is essential to manage it."
|
| 85 |
+
},
|
| 86 |
+
{
|
| 87 |
+
"question": "What is Late blight in Potato?",
|
| 88 |
+
"answer": "Late blight is a disease that affects Potato crops. Proper identification and treatment is essential to manage it."
|
| 89 |
+
},
|
| 90 |
+
{
|
| 91 |
+
"question": "How to keep Potato crops healthy?",
|
| 92 |
+
"answer": "To maintain healthy Potato crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 93 |
+
},
|
| 94 |
+
{
|
| 95 |
+
"question": "How to keep Raspberry crops healthy?",
|
| 96 |
+
"answer": "To maintain healthy Raspberry crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 97 |
+
},
|
| 98 |
+
{
|
| 99 |
+
"question": "How to keep Soybean crops healthy?",
|
| 100 |
+
"answer": "To maintain healthy Soybean crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 101 |
+
},
|
| 102 |
+
{
|
| 103 |
+
"question": "What is Powdery mildew in Squash?",
|
| 104 |
+
"answer": "Powdery mildew is a disease that affects Squash crops. Proper identification and treatment is essential to manage it."
|
| 105 |
+
},
|
| 106 |
+
{
|
| 107 |
+
"question": "What is Leaf scorch in Strawberry?",
|
| 108 |
+
"answer": "Leaf scorch is a disease that affects Strawberry crops. Proper identification and treatment is essential to manage it."
|
| 109 |
+
},
|
| 110 |
+
{
|
| 111 |
+
"question": "How to keep Strawberry crops healthy?",
|
| 112 |
+
"answer": "To maintain healthy Strawberry crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 113 |
+
},
|
| 114 |
+
{
|
| 115 |
+
"question": "What is Bacterial spot in Tomato?",
|
| 116 |
+
"answer": "Bacterial spot is a disease that affects Tomato crops. Proper identification and treatment is essential to manage it."
|
| 117 |
+
},
|
| 118 |
+
{
|
| 119 |
+
"question": "What is Early blight in Tomato?",
|
| 120 |
+
"answer": "Early blight is a disease that affects Tomato crops. Proper identification and treatment is essential to manage it."
|
| 121 |
+
},
|
| 122 |
+
{
|
| 123 |
+
"question": "What is Late blight in Tomato?",
|
| 124 |
+
"answer": "Late blight is a disease that affects Tomato crops. Proper identification and treatment is essential to manage it."
|
| 125 |
+
},
|
| 126 |
+
{
|
| 127 |
+
"question": "What is Leaf Mold in Tomato?",
|
| 128 |
+
"answer": "Leaf Mold is a disease that affects Tomato crops. Proper identification and treatment is essential to manage it."
|
| 129 |
+
},
|
| 130 |
+
{
|
| 131 |
+
"question": "What is Septoria leaf spot in Tomato?",
|
| 132 |
+
"answer": "Septoria leaf spot is a disease that affects Tomato crops. Proper identification and treatment is essential to manage it."
|
| 133 |
+
},
|
| 134 |
+
{
|
| 135 |
+
"question": "What is Spider mites Two-spotted spider mite in Tomato?",
|
| 136 |
+
"answer": "Spider mites Two-spotted spider mite is a disease that affects Tomato crops. Proper identification and treatment is essential to manage it."
|
| 137 |
+
},
|
| 138 |
+
{
|
| 139 |
+
"question": "What is Target Spot in Tomato?",
|
| 140 |
+
"answer": "Target Spot is a disease that affects Tomato crops. Proper identification and treatment is essential to manage it."
|
| 141 |
+
},
|
| 142 |
+
{
|
| 143 |
+
"question": "What is Tomato Yellow Leaf Curl Virus in Tomato?",
|
| 144 |
+
"answer": "Tomato Yellow Leaf Curl Virus is a disease that affects Tomato crops. Proper identification and treatment is essential to manage it."
|
| 145 |
+
},
|
| 146 |
+
{
|
| 147 |
+
"question": "What is Tomato mosaic virus in Tomato?",
|
| 148 |
+
"answer": "Tomato mosaic virus is a disease that affects Tomato crops. Proper identification and treatment is essential to manage it."
|
| 149 |
+
},
|
| 150 |
+
{
|
| 151 |
+
"question": "How to keep Tomato crops healthy?",
|
| 152 |
+
"answer": "To maintain healthy Tomato crops, ensure good soil, irrigation, pest control, and timely fertilization."
|
| 153 |
+
}
|
| 154 |
+
]
|
requirements.txt
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
fastapi==0.116.1
|
| 2 |
+
langchain==0.3.27
|
| 3 |
+
langchain_community==0.3.27
|
| 4 |
+
langchain_core==0.3.72
|
| 5 |
+
langchain_google_genai==2.1.8
|
| 6 |
+
langchain_huggingface==0.3.1
|
| 7 |
+
langchain_text_splitters==0.3.9
|
| 8 |
+
pydantic==2.11.7
|
| 9 |
+
uvicorn==0.35.0
|