app.py

import streamlit as st
from difflib import SequenceMatcher

# Function to calculate DNA sequence similarity
def calculate_similarity(seq1, seq2):
    # Calculate similarity ratio using SequenceMatcher
    seq_matcher = SequenceMatcher(None, seq1, seq2)
    return seq_matcher.ratio() * 100

# Function to display DNA sequence matching results
def display_results(seq1, seq2, similarity):
    st.subheader("Results")
    st.write(f"DNA Sequence 1: {seq1}")
    st.write(f"DNA Sequence 2: {seq2}")
    
    if similarity == 100:
        st.success("The DNA sequences are an exact match!")
    elif similarity > 0:
        st.warning(f"The sequences are {similarity:.2f}% similar.")
    else:
        st.error("The sequences do not match.")

# Title of the app
st.title("DNA Sequence Matching App")

# User input for DNA Sequences
st.subheader("Enter two DNA sequences to match:")

seq1 = st.text_area("DNA Sequence 1 (e.g., ATCGGCTA)", height=150)
seq2 = st.text_area("DNA Sequence 2 (e.g., ATCGGCTA)", height=150)

if st.button("Match Sequences"):
    # Remove any spaces or newline characters from the sequences
    seq1 = seq1.replace(" ", "").replace("\n", "").upper()
    seq2 = seq2.replace(" ", "").replace("\n", "").upper()
    
    # Check if the sequences are non-empty
    if seq1 and seq2:
        similarity = calculate_similarity(seq1, seq2)
        display_results(seq1, seq2, similarity)
    else:
        st.error("Both DNA sequences must be entered.")

# Optional: DNA Sequence Upload (CSV or Text file input)
st.sidebar.subheader("Upload DNA Sequences")
uploaded_file = st.sidebar.file_uploader("Upload file with DNA sequences", type=["txt", "csv"])

if uploaded_file is not None:
    # Read the uploaded file and assume it's a text file with sequences
    content = uploaded_file.read().decode("utf-8").strip().splitlines()
    if len(content) >= 2:
        seq1 = content[0]
        seq2 = content[1]
        similarity = calculate_similarity(seq1, seq2)
        display_results(seq1, seq2, similarity)
    else:
        st.sidebar.error("The uploaded file must contain at least two DNA sequences.")