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page_files/categorized/Backend/plot_mapping_ui.py
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| 1 |
+
"""
|
| 2 |
+
plot_mapping_ui.py
|
| 3 |
+
------------------
|
| 4 |
+
Drop-in replacement for the "Extracted Plots" tab (tab2) in Upload_Data.py.
|
| 5 |
+
|
| 6 |
+
HOW TO INTEGRATE
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| 7 |
+
────────────────
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| 8 |
+
1. Copy plot_property_mapper.py next to upload_backend.py.
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| 9 |
+
2. In Upload_Data.py, add at the top:
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| 10 |
+
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| 11 |
+
from plot_mapping_ui import render_plot_mapping_tab
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| 12 |
+
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| 13 |
+
3. Replace the entire `with tab2:` block with:
|
| 14 |
+
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| 15 |
+
with tab2:
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| 16 |
+
render_plot_mapping_tab(pdf_path, paper_id)
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| 17 |
+
|
| 18 |
+
That's it. The function reads everything it needs from st.session_state
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| 19 |
+
(which your existing tab1 code already populates).
|
| 20 |
+
"""
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| 21 |
+
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| 22 |
+
import json
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| 23 |
+
import os
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| 24 |
+
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| 25 |
+
import cv2
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| 26 |
+
import numpy as np
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| 27 |
+
import streamlit as st
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| 28 |
+
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| 29 |
+
from plot_property_mapper import (
|
| 30 |
+
batch_map_plots,
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| 31 |
+
fetch_properties_for_material,
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| 32 |
+
save_plot_image_mapping,
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| 33 |
+
)
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| 34 |
+
|
| 35 |
+
# ── tiny helper ───────────────────────────────────────────────────────────────
|
| 36 |
+
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| 37 |
+
def _confidence_badge(conf: str) -> str:
|
| 38 |
+
colors = {"high": "#16a34a", "medium": "#d97706", "low": "#dc2626"}
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| 39 |
+
c = colors.get(conf.lower(), "#6b7280")
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| 40 |
+
return (
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| 41 |
+
f"<span style='background:{c};color:#fff;padding:2px 10px;"
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| 42 |
+
f"border-radius:99px;font-size:0.78rem;font-weight:700'>{conf.upper()}</span>"
|
| 43 |
+
)
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| 44 |
+
|
| 45 |
+
|
| 46 |
+
# ── main render function ───────────────────────────────────────────────────────
|
| 47 |
+
|
| 48 |
+
def render_plot_mapping_tab(pdf_path: str, paper_id: str):
|
| 49 |
+
"""Render the full Extracted Plots + Property Mapping tab."""
|
| 50 |
+
|
| 51 |
+
st.subheader("Extracted Plot Images & Property Mapping")
|
| 52 |
+
|
| 53 |
+
# ── session-state keys ────────────────────────────────────────────────────
|
| 54 |
+
for key, default in [
|
| 55 |
+
("pdf_processed", False),
|
| 56 |
+
("image_results", []),
|
| 57 |
+
("mapped_results", []),
|
| 58 |
+
("mapping_done", False),
|
| 59 |
+
("saved_image_mapping", {}),
|
| 60 |
+
("pdf_extracted_df", __import__("pandas").DataFrame()),
|
| 61 |
+
("pdf_extracted_meta", {}),
|
| 62 |
+
]:
|
| 63 |
+
if key not in st.session_state:
|
| 64 |
+
st.session_state[key] = default
|
| 65 |
+
|
| 66 |
+
# ── 1. Extract plots if not done yet ─────────────────────────────────────
|
| 67 |
+
if not st.session_state.pdf_processed:
|
| 68 |
+
with st.spinner("Extracting plots from PDF…"):
|
| 69 |
+
import fitz
|
| 70 |
+
from upload_backend import extract_images
|
| 71 |
+
|
| 72 |
+
doc = fitz.open(pdf_path)
|
| 73 |
+
st.session_state.image_results = extract_images(doc)
|
| 74 |
+
doc.close()
|
| 75 |
+
st.session_state.pdf_processed = True
|
| 76 |
+
st.session_state.mapping_done = False # reset mapping on new PDF
|
| 77 |
+
|
| 78 |
+
image_results = st.session_state.image_results
|
| 79 |
+
|
| 80 |
+
if not image_results:
|
| 81 |
+
st.warning("No plots found in this PDF.")
|
| 82 |
+
return
|
| 83 |
+
|
| 84 |
+
# ── 2. Info bar ───────────────────────────────────────────────────────────
|
| 85 |
+
has_data = not st.session_state.pdf_extracted_df.empty
|
| 86 |
+
material_class = st.session_state.get("selected_material_class") # set below
|
| 87 |
+
|
| 88 |
+
if has_data:
|
| 89 |
+
df = st.session_state.pdf_extracted_df
|
| 90 |
+
mat_abbr = df.iloc[0]["material_abbreviation"]
|
| 91 |
+
st.info(
|
| 92 |
+
f"**{len(image_results)} plots** extracted | "
|
| 93 |
+
f"Material: **{mat_abbr}** | "
|
| 94 |
+
f"{len(df['property_name'].unique())} DB properties available"
|
| 95 |
+
)
|
| 96 |
+
else:
|
| 97 |
+
st.warning(
|
| 98 |
+
"Extract material data in the **Material Data** tab first "
|
| 99 |
+
"to enable AI property mapping."
|
| 100 |
+
)
|
| 101 |
+
|
| 102 |
+
st.divider()
|
| 103 |
+
|
| 104 |
+
# ── 3. Download buttons (always visible) ──────────────────────────────────
|
| 105 |
+
from upload_backend import create_zip
|
| 106 |
+
|
| 107 |
+
col_img, col_json, col_all = st.columns(3)
|
| 108 |
+
with col_img:
|
| 109 |
+
img_zip = create_zip(image_results, include_json=False)
|
| 110 |
+
st.download_button(
|
| 111 |
+
"⬇ Download Images",
|
| 112 |
+
data=img_zip,
|
| 113 |
+
file_name=f"{paper_id}_images.zip",
|
| 114 |
+
mime="application/zip",
|
| 115 |
+
use_container_width=True,
|
| 116 |
+
key="dl_images",
|
| 117 |
+
)
|
| 118 |
+
with col_json:
|
| 119 |
+
json_data = [
|
| 120 |
+
{"caption": r["caption"], "page": r["page"],
|
| 121 |
+
"image_count": len(r["image_data"])}
|
| 122 |
+
for r in image_results
|
| 123 |
+
]
|
| 124 |
+
st.download_button(
|
| 125 |
+
"⬇ Download JSON",
|
| 126 |
+
data=json.dumps(json_data, indent=4),
|
| 127 |
+
file_name=f"{paper_id}_metadata.json",
|
| 128 |
+
mime="application/json",
|
| 129 |
+
use_container_width=True,
|
| 130 |
+
key="dl_json",
|
| 131 |
+
)
|
| 132 |
+
with col_all:
|
| 133 |
+
full_zip = create_zip(image_results, include_json=True)
|
| 134 |
+
st.download_button(
|
| 135 |
+
"⬇ Download All",
|
| 136 |
+
data=full_zip,
|
| 137 |
+
file_name=f"{paper_id}_complete.zip",
|
| 138 |
+
mime="application/zip",
|
| 139 |
+
use_container_width=True,
|
| 140 |
+
key="dl_all",
|
| 141 |
+
)
|
| 142 |
+
|
| 143 |
+
st.divider()
|
| 144 |
+
|
| 145 |
+
# ── 4. AI mapping panel (only when data is extracted) ────────────────────
|
| 146 |
+
if has_data:
|
| 147 |
+
from db import fetch_all # your existing db module
|
| 148 |
+
|
| 149 |
+
df = st.session_state.pdf_extracted_df
|
| 150 |
+
mat_abbr = df.iloc[0]["material_abbreviation"]
|
| 151 |
+
extracted_json = st.session_state.get("pdf_extracted_meta", {})
|
| 152 |
+
|
| 153 |
+
# Material class selector (needed to route to the right table)
|
| 154 |
+
material_class = st.selectbox(
|
| 155 |
+
"Material class (for DB lookup)",
|
| 156 |
+
["Polymer", "Fiber", "Composite"],
|
| 157 |
+
index=0,
|
| 158 |
+
key="selected_material_class",
|
| 159 |
+
help="Determines which PostgreSQL table to fetch properties from.",
|
| 160 |
+
)
|
| 161 |
+
|
| 162 |
+
run_mapping = st.button(
|
| 163 |
+
"🤖 Run AI Property Mapping",
|
| 164 |
+
type="primary",
|
| 165 |
+
disabled=st.session_state.mapping_done,
|
| 166 |
+
help="Sends each plot + caption + extracted JSON to Gemini for matching.",
|
| 167 |
+
)
|
| 168 |
+
|
| 169 |
+
if run_mapping:
|
| 170 |
+
# Fetch DB properties
|
| 171 |
+
with st.spinner("Fetching properties from PostgreSQL…"):
|
| 172 |
+
try:
|
| 173 |
+
db_properties = fetch_properties_for_material(
|
| 174 |
+
mat_abbr, material_class, fetch_all
|
| 175 |
+
)
|
| 176 |
+
except Exception as exc:
|
| 177 |
+
st.error(f"DB error: {exc}")
|
| 178 |
+
db_properties = []
|
| 179 |
+
|
| 180 |
+
if not db_properties:
|
| 181 |
+
st.warning(
|
| 182 |
+
f"No properties found for **{mat_abbr}** in the "
|
| 183 |
+
f"**{material_class}** table. Mapping will use all properties."
|
| 184 |
+
)
|
| 185 |
+
|
| 186 |
+
# Run batch mapping with progress bar
|
| 187 |
+
progress_bar = st.progress(0, text="Mapping plots…")
|
| 188 |
+
|
| 189 |
+
def _update(i, total, caption):
|
| 190 |
+
pct = int((i / max(total, 1)) * 100)
|
| 191 |
+
progress_bar.progress(
|
| 192 |
+
pct,
|
| 193 |
+
text=f"Mapping {i+1}/{total}: {caption[:60]}…",
|
| 194 |
+
)
|
| 195 |
+
|
| 196 |
+
with st.spinner("AI is analysing plots…"):
|
| 197 |
+
mapped = batch_map_plots(
|
| 198 |
+
image_results=image_results,
|
| 199 |
+
extracted_json=extracted_json,
|
| 200 |
+
db_properties=db_properties,
|
| 201 |
+
progress_callback=_update,
|
| 202 |
+
)
|
| 203 |
+
|
| 204 |
+
progress_bar.progress(100, text="Done!")
|
| 205 |
+
st.session_state.mapped_results = mapped
|
| 206 |
+
st.session_state.mapping_done = True
|
| 207 |
+
st.success(f"✅ Mapped {len(mapped)} plots")
|
| 208 |
+
st.rerun()
|
| 209 |
+
|
| 210 |
+
if st.session_state.mapping_done and st.session_state.mapped_results:
|
| 211 |
+
st.caption("Mapping complete. Review & confirm each match below.")
|
| 212 |
+
|
| 213 |
+
st.divider()
|
| 214 |
+
|
| 215 |
+
# ── 5. Plot cards ─────────────────────────────────────────────────────────
|
| 216 |
+
use_mapped = (
|
| 217 |
+
has_data
|
| 218 |
+
and st.session_state.mapping_done
|
| 219 |
+
and bool(st.session_state.mapped_results)
|
| 220 |
+
)
|
| 221 |
+
|
| 222 |
+
display_list = (
|
| 223 |
+
st.session_state.mapped_results if use_mapped else image_results
|
| 224 |
+
)
|
| 225 |
+
|
| 226 |
+
for idx, item in enumerate(display_list):
|
| 227 |
+
caption = item.get("caption", f"Figure {idx+1}")
|
| 228 |
+
page = item.get("page", "?")
|
| 229 |
+
img_list = item.get("image_data", [])
|
| 230 |
+
mapping = item.get("mapping_result") if use_mapped else None
|
| 231 |
+
|
| 232 |
+
with st.container(border=True):
|
| 233 |
+
|
| 234 |
+
# — header row —
|
| 235 |
+
col_cap, col_del = st.columns([0.88, 0.12])
|
| 236 |
+
col_cap.markdown(f"**Page {page}** — {caption}")
|
| 237 |
+
if col_del.button("🗑 Delete", key=f"del_group_{idx}"):
|
| 238 |
+
if use_mapped:
|
| 239 |
+
st.session_state.mapped_results.pop(idx)
|
| 240 |
+
else:
|
| 241 |
+
st.session_state.image_results.pop(idx)
|
| 242 |
+
st.rerun()
|
| 243 |
+
|
| 244 |
+
# — AI mapping result banner —
|
| 245 |
+
if mapping:
|
| 246 |
+
prop_name = mapping.get("property_name", "")
|
| 247 |
+
section = mapping.get("section", "")
|
| 248 |
+
confidence = mapping.get("confidence", "low")
|
| 249 |
+
reasoning = mapping.get("reasoning", "")
|
| 250 |
+
db_row = mapping.get("db_row")
|
| 251 |
+
candidates = mapping.get("all_candidates", [])
|
| 252 |
+
|
| 253 |
+
badge = _confidence_badge(confidence)
|
| 254 |
+
if prop_name:
|
| 255 |
+
st.markdown(
|
| 256 |
+
f"🔗 **AI Match:** `{section}` › **{prop_name}** {badge}",
|
| 257 |
+
unsafe_allow_html=True,
|
| 258 |
+
)
|
| 259 |
+
if reasoning:
|
| 260 |
+
st.caption(f"💬 {reasoning}")
|
| 261 |
+
|
| 262 |
+
# DB row details
|
| 263 |
+
if db_row:
|
| 264 |
+
with st.expander("📋 Matched DB row", expanded=False):
|
| 265 |
+
col_v, col_u, col_c = st.columns(3)
|
| 266 |
+
col_v.metric("Value", db_row.get("value", "—"))
|
| 267 |
+
col_u.metric("Unit", db_row.get("unit", "—"))
|
| 268 |
+
col_c.metric("Condition", db_row.get("test_condition", "—"))
|
| 269 |
+
if db_row.get("comments"):
|
| 270 |
+
st.caption(f"Comments: {db_row['comments']}")
|
| 271 |
+
if db_row.get("english"):
|
| 272 |
+
st.caption(f"English units: {db_row['english']}")
|
| 273 |
+
|
| 274 |
+
# Alternative candidates
|
| 275 |
+
if candidates:
|
| 276 |
+
with st.expander("🔄 All candidates", expanded=False):
|
| 277 |
+
for c in candidates:
|
| 278 |
+
rank = c.get("rank", "?")
|
| 279 |
+
cn = c.get("confidence", "low")
|
| 280 |
+
st.markdown(
|
| 281 |
+
f"{rank}. `{c.get('section','?')}` › "
|
| 282 |
+
f"**{c.get('property_name','?')}** "
|
| 283 |
+
f" {_confidence_badge(cn)}",
|
| 284 |
+
unsafe_allow_html=True,
|
| 285 |
+
)
|
| 286 |
+
else:
|
| 287 |
+
st.warning("⚠️ AI could not match this plot to any DB property.")
|
| 288 |
+
|
| 289 |
+
# — sub-images —
|
| 290 |
+
for p_idx, img_data in enumerate(img_list):
|
| 291 |
+
bgr = img_data.get("array")
|
| 292 |
+
if bgr is None:
|
| 293 |
+
continue
|
| 294 |
+
|
| 295 |
+
img_key = f"{idx}_{p_idx}_{page}"
|
| 296 |
+
|
| 297 |
+
# Show the plot
|
| 298 |
+
st.image(bgr, channels="BGR", width=420)
|
| 299 |
+
|
| 300 |
+
# — mapping controls —
|
| 301 |
+
if has_data:
|
| 302 |
+
df = st.session_state.pdf_extracted_df
|
| 303 |
+
mat_abbr = df.iloc[0]["material_abbreviation"]
|
| 304 |
+
property_list = df["property_name"].unique().tolist()
|
| 305 |
+
|
| 306 |
+
# Pre-select the AI suggestion if available
|
| 307 |
+
ai_suggestion = mapping.get("property_name", "") if mapping else ""
|
| 308 |
+
default_idx = 0
|
| 309 |
+
options = ["— Select property —"] + property_list
|
| 310 |
+
if ai_suggestion in property_list:
|
| 311 |
+
default_idx = property_list.index(ai_suggestion) + 1
|
| 312 |
+
|
| 313 |
+
col_sel, col_sec, col_save, col_rem = st.columns(
|
| 314 |
+
[0.42, 0.18, 0.20, 0.20]
|
| 315 |
+
)
|
| 316 |
+
|
| 317 |
+
with col_sel:
|
| 318 |
+
selected = st.selectbox(
|
| 319 |
+
"Property",
|
| 320 |
+
options=options,
|
| 321 |
+
index=default_idx,
|
| 322 |
+
key=f"prop_sel_{img_key}",
|
| 323 |
+
label_visibility="collapsed",
|
| 324 |
+
)
|
| 325 |
+
|
| 326 |
+
with col_sec:
|
| 327 |
+
section_override = st.text_input(
|
| 328 |
+
"Section",
|
| 329 |
+
value=mapping.get("section", "") if mapping else "",
|
| 330 |
+
key=f"sec_{img_key}",
|
| 331 |
+
label_visibility="collapsed",
|
| 332 |
+
placeholder="Section",
|
| 333 |
+
)
|
| 334 |
+
|
| 335 |
+
with col_save:
|
| 336 |
+
if st.button("💾 Save", key=f"save_{img_key}"):
|
| 337 |
+
if selected and selected != "— Select property —":
|
| 338 |
+
filepath = save_plot_image_mapping(
|
| 339 |
+
mat_abbr,
|
| 340 |
+
selected,
|
| 341 |
+
section_override,
|
| 342 |
+
bgr,
|
| 343 |
+
save_dir="images",
|
| 344 |
+
)
|
| 345 |
+
st.session_state.saved_image_mapping[img_key] = {
|
| 346 |
+
"property": selected,
|
| 347 |
+
"section": section_override,
|
| 348 |
+
"caption": caption,
|
| 349 |
+
"filename": os.path.basename(filepath),
|
| 350 |
+
"path": filepath,
|
| 351 |
+
}
|
| 352 |
+
st.success(f"Saved → `{os.path.basename(filepath)}`")
|
| 353 |
+
st.rerun()
|
| 354 |
+
else:
|
| 355 |
+
st.warning("Select a property first.")
|
| 356 |
+
|
| 357 |
+
with col_rem:
|
| 358 |
+
if st.button("✕ Remove", key=f"rem_{img_key}"):
|
| 359 |
+
img_list.pop(p_idx)
|
| 360 |
+
if not img_list:
|
| 361 |
+
if use_mapped:
|
| 362 |
+
st.session_state.mapped_results.pop(idx)
|
| 363 |
+
else:
|
| 364 |
+
st.session_state.image_results.pop(idx)
|
| 365 |
+
st.rerun()
|
| 366 |
+
|
| 367 |
+
# Saved badge
|
| 368 |
+
if img_key in st.session_state.saved_image_mapping:
|
| 369 |
+
m = st.session_state.saved_image_mapping[img_key]
|
| 370 |
+
st.info(f"✅ Saved as **{m['property']}** → `{m['filename']}`")
|
| 371 |
+
|
| 372 |
+
else:
|
| 373 |
+
# No data extracted yet — just allow removal
|
| 374 |
+
col_msg, col_rem = st.columns([0.80, 0.20])
|
| 375 |
+
col_msg.caption(
|
| 376 |
+
"Extract material data in the **Material Data** tab to enable mapping."
|
| 377 |
+
)
|
| 378 |
+
if col_rem.button("✕ Remove", key=f"rem_nodata_{img_key}"):
|
| 379 |
+
img_list.pop(p_idx)
|
| 380 |
+
if not img_list:
|
| 381 |
+
st.session_state.image_results.pop(idx)
|
| 382 |
+
st.rerun()
|
| 383 |
+
|
| 384 |
+
st.divider()
|
| 385 |
+
|
| 386 |
+
# ── 6. Saved-mappings summary ─────────────────────────────────────────────
|
| 387 |
+
if st.session_state.saved_image_mapping:
|
| 388 |
+
with st.expander(
|
| 389 |
+
f"📁 Saved mappings ({len(st.session_state.saved_image_mapping)})",
|
| 390 |
+
expanded=False,
|
| 391 |
+
):
|
| 392 |
+
for key, info in st.session_state.saved_image_mapping.items():
|
| 393 |
+
st.markdown(
|
| 394 |
+
f"**{info['property']}** › `{info['filename']}` \n"
|
| 395 |
+
f"<small>Caption: {info['caption']}</small>",
|
| 396 |
+
unsafe_allow_html=True,
|
| 397 |
+
)
|
page_files/categorized/Backend/plot_property_mapper.py
ADDED
|
@@ -0,0 +1,385 @@
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|
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|
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|
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|
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|
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|
|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""
|
| 2 |
+
plot_property_mapper.py
|
| 3 |
+
-----------------------
|
| 4 |
+
Maps extracted plot images to material properties stored in PostgreSQL.
|
| 5 |
+
|
| 6 |
+
Strategy:
|
| 7 |
+
1. Fetch all properties for the material from the DB (Polymers / Fibers / Composites_materials)
|
| 8 |
+
2. For each plot: send image + caption + extracted JSON data to Gemini
|
| 9 |
+
3. Gemini returns the best-matching property_name + confidence reasoning
|
| 10 |
+
4. Caller can confirm/override and persist the match
|
| 11 |
+
|
| 12 |
+
DB schema (per table: Polymers, Fibers, Composites_materials):
|
| 13 |
+
material_name, material_abbreviation, section,
|
| 14 |
+
property_name, value, unit, english, test_condition, comments
|
| 15 |
+
"""
|
| 16 |
+
|
| 17 |
+
from __future__ import annotations
|
| 18 |
+
|
| 19 |
+
import base64
|
| 20 |
+
import json
|
| 21 |
+
import os
|
| 22 |
+
import re
|
| 23 |
+
from io import BytesIO
|
| 24 |
+
from typing import Any
|
| 25 |
+
|
| 26 |
+
import cv2
|
| 27 |
+
import numpy as np
|
| 28 |
+
import requests
|
| 29 |
+
from PIL import Image
|
| 30 |
+
|
| 31 |
+
# ---------------------------------------------------------------------------
|
| 32 |
+
# Gemini config (re-uses the same key / model you already use)
|
| 33 |
+
# ---------------------------------------------------------------------------
|
| 34 |
+
_GEMINI_KEY = os.getenv(
|
| 35 |
+
"GEMINI_API_KEY",
|
| 36 |
+
"AIzaSyAuI-qwSCRpdAcGTvNNaS70NkxlLMSrWF0", # fallback – prefer env var
|
| 37 |
+
)
|
| 38 |
+
_GEMINI_MODEL = "gemini-2.5-flash-preview-09-2025"
|
| 39 |
+
_GEMINI_URL = (
|
| 40 |
+
f"https://generativelanguage.googleapis.com/v1beta/"
|
| 41 |
+
f"models/{_GEMINI_MODEL}:generateContent?key={_GEMINI_KEY}"
|
| 42 |
+
)
|
| 43 |
+
|
| 44 |
+
# ---------------------------------------------------------------------------
|
| 45 |
+
# Table routing (mirrors data_loader.py)
|
| 46 |
+
# ---------------------------------------------------------------------------
|
| 47 |
+
TABLE_MAP = {
|
| 48 |
+
"Polymer": "Polymers",
|
| 49 |
+
"Fiber": "Fibers",
|
| 50 |
+
"Composite": "Composites_materials",
|
| 51 |
+
}
|
| 52 |
+
|
| 53 |
+
# ---------------------------------------------------------------------------
|
| 54 |
+
# DB helpers (thin wrappers – import your existing fetch_all from db.py)
|
| 55 |
+
# ---------------------------------------------------------------------------
|
| 56 |
+
|
| 57 |
+
def fetch_properties_for_material(
|
| 58 |
+
material_abbr: str,
|
| 59 |
+
material_class: str,
|
| 60 |
+
fetch_all_fn, # pass db.fetch_all so we don't re-import
|
| 61 |
+
) -> list[dict]:
|
| 62 |
+
"""
|
| 63 |
+
Return all property rows for a given material abbreviation.
|
| 64 |
+
Falls back to all rows in the table if nothing matches the abbreviation.
|
| 65 |
+
"""
|
| 66 |
+
table = TABLE_MAP.get(material_class)
|
| 67 |
+
if not table:
|
| 68 |
+
raise ValueError(f"Unknown material_class: {material_class!r}")
|
| 69 |
+
|
| 70 |
+
query = f"""
|
| 71 |
+
SELECT
|
| 72 |
+
material_name,
|
| 73 |
+
material_abbreviation,
|
| 74 |
+
section,
|
| 75 |
+
property_name,
|
| 76 |
+
value,
|
| 77 |
+
unit,
|
| 78 |
+
english,
|
| 79 |
+
test_condition,
|
| 80 |
+
comments
|
| 81 |
+
FROM "{table}"
|
| 82 |
+
WHERE LOWER(material_abbreviation) = LOWER(:abbr)
|
| 83 |
+
ORDER BY section, property_name
|
| 84 |
+
"""
|
| 85 |
+
rows = fetch_all_fn(query, {"abbr": material_abbr})
|
| 86 |
+
|
| 87 |
+
# fallback: try by name fragment
|
| 88 |
+
if not rows:
|
| 89 |
+
query2 = f"""
|
| 90 |
+
SELECT
|
| 91 |
+
material_name, material_abbreviation, section,
|
| 92 |
+
property_name, value, unit, english, test_condition, comments
|
| 93 |
+
FROM "{table}"
|
| 94 |
+
ORDER BY section, property_name
|
| 95 |
+
"""
|
| 96 |
+
rows = fetch_all_fn(query2)
|
| 97 |
+
|
| 98 |
+
return rows
|
| 99 |
+
|
| 100 |
+
|
| 101 |
+
def save_plot_image_mapping(
|
| 102 |
+
material_abbr: str,
|
| 103 |
+
property_name: str,
|
| 104 |
+
section: str,
|
| 105 |
+
image_array: np.ndarray, # BGR numpy array from cv2
|
| 106 |
+
save_dir: str = "images",
|
| 107 |
+
) -> str:
|
| 108 |
+
"""
|
| 109 |
+
Save the plot image to disk as <save_dir>/<abbr>_<safe_property>.png
|
| 110 |
+
Returns the file path.
|
| 111 |
+
"""
|
| 112 |
+
os.makedirs(save_dir, exist_ok=True)
|
| 113 |
+
safe_prop = re.sub(r"[^\w\s-]", "", property_name).strip().replace(" ", "_")
|
| 114 |
+
filename = f"{material_abbr}_{safe_prop}.png"
|
| 115 |
+
filepath = os.path.join(save_dir, filename)
|
| 116 |
+
cv2.imwrite(filepath, image_array)
|
| 117 |
+
return filepath
|
| 118 |
+
|
| 119 |
+
|
| 120 |
+
# ---------------------------------------------------------------------------
|
| 121 |
+
# Core: Gemini image + data → property match
|
| 122 |
+
# ---------------------------------------------------------------------------
|
| 123 |
+
|
| 124 |
+
def _encode_image_bgr(bgr: np.ndarray) -> tuple[str, str]:
|
| 125 |
+
"""Convert BGR numpy array → base64 PNG string."""
|
| 126 |
+
rgb = cv2.cvtColor(bgr, cv2.COLOR_BGR2RGB)
|
| 127 |
+
pil = Image.fromarray(rgb)
|
| 128 |
+
buf = BytesIO()
|
| 129 |
+
pil.save(buf, format="PNG")
|
| 130 |
+
b64 = base64.b64encode(buf.getvalue()).decode("utf-8")
|
| 131 |
+
return b64, "image/png"
|
| 132 |
+
|
| 133 |
+
|
| 134 |
+
def map_plot_to_property(
|
| 135 |
+
image_bgr: np.ndarray,
|
| 136 |
+
caption: str,
|
| 137 |
+
extracted_json: dict[str, Any], # full Gemini data-extraction output
|
| 138 |
+
db_properties: list[dict], # rows from fetch_properties_for_material
|
| 139 |
+
gemini_api_key: str | None = None,
|
| 140 |
+
) -> dict:
|
| 141 |
+
"""
|
| 142 |
+
Ask Gemini which DB property best matches this plot.
|
| 143 |
+
|
| 144 |
+
Returns
|
| 145 |
+
-------
|
| 146 |
+
{
|
| 147 |
+
"property_name": str, # best match from DB
|
| 148 |
+
"section": str,
|
| 149 |
+
"confidence": "high"|"medium"|"low",
|
| 150 |
+
"reasoning": str,
|
| 151 |
+
"db_row": dict | None, # full matching DB row
|
| 152 |
+
"all_candidates": list[dict], # top-3 ranked by Gemini
|
| 153 |
+
}
|
| 154 |
+
"""
|
| 155 |
+
key = gemini_api_key or _GEMINI_KEY
|
| 156 |
+
url = (
|
| 157 |
+
f"https://generativelanguage.googleapis.com/v1beta/"
|
| 158 |
+
f"models/{_GEMINI_MODEL}:generateContent?key={key}"
|
| 159 |
+
)
|
| 160 |
+
|
| 161 |
+
# Build a compact list of DB properties for the prompt
|
| 162 |
+
prop_list_text = "\n".join(
|
| 163 |
+
f" - [{row['section']}] {row['property_name']} "
|
| 164 |
+
f"(value={row['value']}, unit={row['unit']})"
|
| 165 |
+
for row in db_properties[:80] # cap at 80 to stay within context
|
| 166 |
+
)
|
| 167 |
+
|
| 168 |
+
# Compact extracted JSON (just material + property names + values)
|
| 169 |
+
extracted_summary = {
|
| 170 |
+
"material_name": extracted_json.get("material_name", ""),
|
| 171 |
+
"material_abbreviation": extracted_json.get("material_abbreviation", ""),
|
| 172 |
+
"properties": [
|
| 173 |
+
{
|
| 174 |
+
"section": p.get("section"),
|
| 175 |
+
"property_name": p.get("property_name"),
|
| 176 |
+
"value": p.get("value"),
|
| 177 |
+
"unit": p.get("unit"),
|
| 178 |
+
}
|
| 179 |
+
for p in extracted_json.get("mechanical_properties", [])[:40]
|
| 180 |
+
],
|
| 181 |
+
}
|
| 182 |
+
|
| 183 |
+
prompt = f"""You are an expert materials scientist.
|
| 184 |
+
|
| 185 |
+
TASK: Identify which property from the DATABASE LIST best matches the provided plot image.
|
| 186 |
+
|
| 187 |
+
PLOT CAPTION:
|
| 188 |
+
"{caption}"
|
| 189 |
+
|
| 190 |
+
EXTRACTED TEXT DATA FROM THE SAME PDF (JSON summary):
|
| 191 |
+
{json.dumps(extracted_summary, indent=2)}
|
| 192 |
+
|
| 193 |
+
DATABASE PROPERTIES FOR THIS MATERIAL:
|
| 194 |
+
{prop_list_text}
|
| 195 |
+
|
| 196 |
+
INSTRUCTIONS:
|
| 197 |
+
1. Examine the plot image carefully (axes labels, units, curve shapes, legend text).
|
| 198 |
+
2. Use the caption AND the extracted JSON data as additional context.
|
| 199 |
+
3. Select the TOP 3 best-matching property names from the DATABASE PROPERTIES list above.
|
| 200 |
+
4. For each candidate give a confidence: high / medium / low.
|
| 201 |
+
5. Return ONLY valid JSON — no markdown, no explanation outside the JSON.
|
| 202 |
+
|
| 203 |
+
REQUIRED JSON FORMAT:
|
| 204 |
+
{{
|
| 205 |
+
"best_match": {{
|
| 206 |
+
"property_name": "<exact name from DB list>",
|
| 207 |
+
"section": "<section from DB list>",
|
| 208 |
+
"confidence": "high|medium|low",
|
| 209 |
+
"reasoning": "<1-2 sentence explanation>"
|
| 210 |
+
}},
|
| 211 |
+
"candidates": [
|
| 212 |
+
{{"rank": 1, "property_name": "...", "section": "...", "confidence": "..."}},
|
| 213 |
+
{{"rank": 2, "property_name": "...", "section": "...", "confidence": "..."}},
|
| 214 |
+
{{"rank": 3, "property_name": "...", "section": "...", "confidence": "..."}}
|
| 215 |
+
]
|
| 216 |
+
}}
|
| 217 |
+
"""
|
| 218 |
+
|
| 219 |
+
img_b64, img_mime = _encode_image_bgr(image_bgr)
|
| 220 |
+
|
| 221 |
+
payload = {
|
| 222 |
+
"contents": [
|
| 223 |
+
{
|
| 224 |
+
"parts": [
|
| 225 |
+
{"text": prompt},
|
| 226 |
+
{"inlineData": {"mimeType": img_mime, "data": img_b64}},
|
| 227 |
+
]
|
| 228 |
+
}
|
| 229 |
+
],
|
| 230 |
+
"generationConfig": {
|
| 231 |
+
"temperature": 0.0,
|
| 232 |
+
"responseMimeType": "application/json",
|
| 233 |
+
},
|
| 234 |
+
}
|
| 235 |
+
|
| 236 |
+
try:
|
| 237 |
+
resp = requests.post(url, json=payload, timeout=120)
|
| 238 |
+
resp.raise_for_status()
|
| 239 |
+
raw = resp.json()
|
| 240 |
+
|
| 241 |
+
parts = raw.get("candidates", [{}])[0].get("content", {}).get("parts", [])
|
| 242 |
+
json_text = ""
|
| 243 |
+
for p in parts:
|
| 244 |
+
t = p.get("text", "")
|
| 245 |
+
if t.strip().startswith("{"):
|
| 246 |
+
json_text = t
|
| 247 |
+
break
|
| 248 |
+
|
| 249 |
+
if not json_text:
|
| 250 |
+
return _empty_result("Gemini returned no JSON")
|
| 251 |
+
|
| 252 |
+
result = json.loads(json_text)
|
| 253 |
+
|
| 254 |
+
except Exception as exc:
|
| 255 |
+
return _empty_result(str(exc))
|
| 256 |
+
|
| 257 |
+
# Attach full DB row to best_match
|
| 258 |
+
best = result.get("best_match", {})
|
| 259 |
+
matched_prop = best.get("property_name", "")
|
| 260 |
+
db_row = next(
|
| 261 |
+
(r for r in db_properties if r["property_name"] == matched_prop),
|
| 262 |
+
None,
|
| 263 |
+
)
|
| 264 |
+
best["db_row"] = db_row
|
| 265 |
+
|
| 266 |
+
return {
|
| 267 |
+
"property_name": matched_prop,
|
| 268 |
+
"section": best.get("section", ""),
|
| 269 |
+
"confidence": best.get("confidence", "low"),
|
| 270 |
+
"reasoning": best.get("reasoning", ""),
|
| 271 |
+
"db_row": db_row,
|
| 272 |
+
"all_candidates": result.get("candidates", []),
|
| 273 |
+
}
|
| 274 |
+
|
| 275 |
+
|
| 276 |
+
def _empty_result(error: str) -> dict:
|
| 277 |
+
return {
|
| 278 |
+
"property_name": "",
|
| 279 |
+
"section": "",
|
| 280 |
+
"confidence": "low",
|
| 281 |
+
"reasoning": f"Error: {error}",
|
| 282 |
+
"db_row": None,
|
| 283 |
+
"all_candidates": [],
|
| 284 |
+
}
|
| 285 |
+
|
| 286 |
+
|
| 287 |
+
# ---------------------------------------------------------------------------
|
| 288 |
+
# Batch mapper (call once per PDF after extraction)
|
| 289 |
+
# ---------------------------------------------------------------------------
|
| 290 |
+
|
| 291 |
+
def batch_map_plots(
|
| 292 |
+
image_results: list[dict], # from extract_images() in upload_backend.py
|
| 293 |
+
extracted_json: dict, # from call_gemini_from_bytes()
|
| 294 |
+
db_properties: list[dict], # from fetch_properties_for_material()
|
| 295 |
+
gemini_api_key: str | None = None,
|
| 296 |
+
progress_callback=None, # optional fn(current, total, caption)
|
| 297 |
+
) -> list[dict]:
|
| 298 |
+
"""
|
| 299 |
+
Map every extracted plot to a DB property.
|
| 300 |
+
|
| 301 |
+
Returns a list parallel to image_results:
|
| 302 |
+
[
|
| 303 |
+
{
|
| 304 |
+
"caption": str,
|
| 305 |
+
"page": int,
|
| 306 |
+
"image_data": [...], # original image_data list
|
| 307 |
+
"mapping_result": { ...map_plot_to_property output... }
|
| 308 |
+
},
|
| 309 |
+
...
|
| 310 |
+
]
|
| 311 |
+
"""
|
| 312 |
+
total = len(image_results)
|
| 313 |
+
out = []
|
| 314 |
+
|
| 315 |
+
for i, item in enumerate(image_results):
|
| 316 |
+
caption = item.get("caption", "")
|
| 317 |
+
page = item.get("page", 0)
|
| 318 |
+
|
| 319 |
+
if progress_callback:
|
| 320 |
+
progress_callback(i, total, caption)
|
| 321 |
+
|
| 322 |
+
# Use first sub-image for mapping (usually there's only one per caption)
|
| 323 |
+
img_list = item.get("image_data", [])
|
| 324 |
+
if not img_list:
|
| 325 |
+
out.append({**item, "mapping_result": _empty_result("No image data")})
|
| 326 |
+
continue
|
| 327 |
+
|
| 328 |
+
bgr = img_list[0].get("array")
|
| 329 |
+
if bgr is None:
|
| 330 |
+
out.append({**item, "mapping_result": _empty_result("Missing array")})
|
| 331 |
+
continue
|
| 332 |
+
|
| 333 |
+
result = map_plot_to_property(
|
| 334 |
+
image_bgr=bgr,
|
| 335 |
+
caption=caption,
|
| 336 |
+
extracted_json=extracted_json,
|
| 337 |
+
db_properties=db_properties,
|
| 338 |
+
gemini_api_key=gemini_api_key,
|
| 339 |
+
)
|
| 340 |
+
|
| 341 |
+
out.append({
|
| 342 |
+
"caption": caption,
|
| 343 |
+
"page": page,
|
| 344 |
+
"image_data": img_list,
|
| 345 |
+
"mapping_result": result,
|
| 346 |
+
})
|
| 347 |
+
|
| 348 |
+
return out
|
| 349 |
+
|
| 350 |
+
def save_plot_image_to_db(
|
| 351 |
+
material_abbr: str,
|
| 352 |
+
property_name: str,
|
| 353 |
+
image_bgr,
|
| 354 |
+
material_class: str,
|
| 355 |
+
execute_query_fn,
|
| 356 |
+
) -> bool:
|
| 357 |
+
"""Save plot image as BYTEA into the matching property row in PostgreSQL."""
|
| 358 |
+
|
| 359 |
+
table_map = {
|
| 360 |
+
"Polymer": "Polymers",
|
| 361 |
+
"Fiber": "Fibers",
|
| 362 |
+
"Composite": "Composites_materials",
|
| 363 |
+
}
|
| 364 |
+
table = table_map.get(material_class)
|
| 365 |
+
if not table:
|
| 366 |
+
return False
|
| 367 |
+
|
| 368 |
+
_, buffer = cv2.imencode(".png", image_bgr)
|
| 369 |
+
image_bytes = buffer.tobytes()
|
| 370 |
+
|
| 371 |
+
query = f"""
|
| 372 |
+
UPDATE "{table}"
|
| 373 |
+
SET image = :image
|
| 374 |
+
WHERE LOWER(material_abbreviation) = LOWER(:abbr)
|
| 375 |
+
AND LOWER(property_name) = LOWER(:prop)
|
| 376 |
+
"""
|
| 377 |
+
rows_updated = execute_query_fn(
|
| 378 |
+
query,
|
| 379 |
+
{
|
| 380 |
+
"image": image_bytes,
|
| 381 |
+
"abbr": material_abbr,
|
| 382 |
+
"prop": property_name,
|
| 383 |
+
}
|
| 384 |
+
)
|
| 385 |
+
return rows_updated > 0
|