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| from .torch_core import * | |
| from .basic_data import * | |
| from .layers import * | |
| from numbers import Integral | |
| __all__ = ['ItemList', 'CategoryList', 'MultiCategoryList', 'MultiCategoryProcessor', 'LabelList', 'ItemLists', 'get_files', | |
| 'PreProcessor', 'LabelLists', 'FloatList', 'CategoryProcessor', 'EmptyLabelList', 'MixedItem', 'MixedProcessor', | |
| 'MixedItemList'] | |
| def _decode(df): | |
| return np.array([[df.columns[i] for i,t in enumerate(x) if t==1] for x in df.values], dtype=np.object) | |
| def _maybe_squeeze(arr): return (arr if is1d(arr) else np.squeeze(arr)) | |
| def _path_to_same_str(p_fn): | |
| "path -> str, but same on nt+posix, for alpha-sort only" | |
| s_fn = str(p_fn) | |
| s_fn = s_fn.replace('\\','.') | |
| s_fn = s_fn.replace('/','.') | |
| return s_fn | |
| def _get_files(parent, p, f, extensions): | |
| p = Path(p)#.relative_to(parent) | |
| if isinstance(extensions,str): extensions = [extensions] | |
| low_extensions = [e.lower() for e in extensions] if extensions is not None else None | |
| res = [p/o for o in f if not o.startswith('.') | |
| and (extensions is None or f'.{o.split(".")[-1].lower()}' in low_extensions)] | |
| return res | |
| def get_files(path:PathOrStr, extensions:Collection[str]=None, recurse:bool=False, | |
| include:Optional[Collection[str]]=None, presort:bool=False)->FilePathList: | |
| "Return list of files in `path` that have a suffix in `extensions`; optionally `recurse`." | |
| if recurse: | |
| res = [] | |
| for i,(p,d,f) in enumerate(os.walk(path)): | |
| # skip hidden dirs | |
| if include is not None and i==0: d[:] = [o for o in d if o in include] | |
| else: d[:] = [o for o in d if not o.startswith('.')] | |
| res += _get_files(path, p, f, extensions) | |
| if presort: res = sorted(res, key=lambda p: _path_to_same_str(p), reverse=False) | |
| return res | |
| else: | |
| f = [o.name for o in os.scandir(path) if o.is_file()] | |
| res = _get_files(path, path, f, extensions) | |
| if presort: res = sorted(res, key=lambda p: _path_to_same_str(p), reverse=False) | |
| return res | |
| class PreProcessor(): | |
| "Basic class for a processor that will be applied to items at the end of the data block API." | |
| def __init__(self, ds:Collection=None): self.ref_ds = ds | |
| def process_one(self, item:Any): return item | |
| def process(self, ds:Collection): ds.items = array([self.process_one(item) for item in ds.items]) | |
| PreProcessors = Union[PreProcessor, Collection[PreProcessor]] | |
| fastai_types[PreProcessors] = 'PreProcessors' | |
| class ItemList(): | |
| "A collection of items with `__len__` and `__getitem__` with `ndarray` indexing semantics." | |
| _bunch,_processor,_label_cls,_square_show,_square_show_res = DataBunch,None,None,False,False | |
| def __init__(self, items:Iterator, path:PathOrStr='.', label_cls:Callable=None, inner_df:Any=None, | |
| processor:PreProcessors=None, x:'ItemList'=None, ignore_empty:bool=False): | |
| self.path = Path(path) | |
| self.num_parts = len(self.path.parts) | |
| self.items,self.x,self.ignore_empty = items,x,ignore_empty | |
| if not isinstance(self.items,np.ndarray): self.items = array(self.items, dtype=object) | |
| self.label_cls,self.inner_df,self.processor = ifnone(label_cls,self._label_cls),inner_df,processor | |
| self._label_list,self._split = LabelList,ItemLists | |
| self.copy_new = ['x', 'label_cls', 'path'] | |
| def __len__(self)->int: return len(self.items) or 1 | |
| def get(self, i)->Any: | |
| "Subclass if you want to customize how to create item `i` from `self.items`." | |
| return self.items[i] | |
| def __repr__(self)->str: | |
| items = [self[i] for i in range(min(5,len(self.items)))] | |
| return f'{self.__class__.__name__} ({len(self.items)} items)\n{show_some(items)}\nPath: {self.path}' | |
| def process(self, processor:PreProcessors=None): | |
| "Apply `processor` or `self.processor` to `self`." | |
| if processor is not None: self.processor = processor | |
| self.processor = listify(self.processor) | |
| for p in self.processor: p.process(self) | |
| return self | |
| def process_one(self, item:ItemBase, processor:PreProcessors=None): | |
| "Apply `processor` or `self.processor` to `item`." | |
| if processor is not None: self.processor = processor | |
| self.processor = listify(self.processor) | |
| for p in self.processor: item = p.process_one(item) | |
| return item | |
| def analyze_pred(self, pred:Tensor): | |
| "Called on `pred` before `reconstruct` for additional preprocessing." | |
| return pred | |
| def reconstruct(self, t:Tensor, x:Tensor=None): | |
| "Reconstruct one of the underlying item for its data `t`." | |
| return self[0].reconstruct(t,x) if has_arg(self[0].reconstruct, 'x') else self[0].reconstruct(t) | |
| def new(self, items:Iterator, processor:PreProcessors=None, **kwargs)->'ItemList': | |
| "Create a new `ItemList` from `items`, keeping the same attributes." | |
| processor = ifnone(processor, self.processor) | |
| copy_d = {o:getattr(self,o) for o in self.copy_new} | |
| kwargs = {**copy_d, **kwargs} | |
| return self.__class__(items=items, processor=processor, **kwargs) | |
| def add(self, items:'ItemList'): | |
| self.items = np.concatenate([self.items, items.items], 0) | |
| if self.inner_df is not None and items.inner_df is not None: | |
| self.inner_df = pd.concat([self.inner_df, items.inner_df]) | |
| else: self.inner_df = self.inner_df or items.inner_df | |
| return self | |
| def __getitem__(self,idxs:int)->Any: | |
| "returns a single item based if `idxs` is an integer or a new `ItemList` object if `idxs` is a range." | |
| idxs = try_int(idxs) | |
| if isinstance(idxs, Integral): return self.get(idxs) | |
| else: return self.new(self.items[idxs], inner_df=index_row(self.inner_df, idxs)) | |
| def from_folder(cls, path:PathOrStr, extensions:Collection[str]=None, recurse:bool=True, | |
| include:Optional[Collection[str]]=None, processor:PreProcessors=None, presort:Optional[bool]=False, **kwargs)->'ItemList': | |
| """Create an `ItemList` in `path` from the filenames that have a suffix in `extensions`. | |
| `recurse` determines if we search subfolders.""" | |
| path = Path(path) | |
| return cls(get_files(path, extensions, recurse=recurse, include=include, presort=presort), path=path, processor=processor, **kwargs) | |
| def from_df(cls, df:DataFrame, path:PathOrStr='.', cols:IntsOrStrs=0, processor:PreProcessors=None, **kwargs)->'ItemList': | |
| "Create an `ItemList` in `path` from the inputs in the `cols` of `df`." | |
| inputs = df.iloc[:,df_names_to_idx(cols, df)] | |
| assert not inputs.isna().any().any(), f"You have NaN values in column(s) {cols} of your dataframe, please fix it." | |
| res = cls(items=_maybe_squeeze(inputs.values), path=path, inner_df=df, processor=processor, **kwargs) | |
| return res | |
| def from_csv(cls, path:PathOrStr, csv_name:str, cols:IntsOrStrs=0, delimiter:str=None, header:str='infer', | |
| processor:PreProcessors=None, **kwargs)->'ItemList': | |
| """Create an `ItemList` in `path` from the inputs in the `cols` of `path/csv_name`""" | |
| df = pd.read_csv(Path(path)/csv_name, delimiter=delimiter, header=header) | |
| return cls.from_df(df, path=path, cols=cols, processor=processor, **kwargs) | |
| def _relative_item_path(self, i): return self.items[i].relative_to(self.path) | |
| def _relative_item_paths(self): return [self._relative_item_path(i) for i in range_of(self.items)] | |
| def use_partial_data(self, sample_pct:float=0.01, seed:int=None)->'ItemList': | |
| "Use only a sample of `sample_pct`of the full dataset and an optional `seed`." | |
| if seed is not None: np.random.seed(seed) | |
| rand_idx = np.random.permutation(range_of(self)) | |
| cut = int(sample_pct * len(self)) | |
| return self[rand_idx[:cut]] | |
| def to_text(self, fn:str): | |
| "Save `self.items` to `fn` in `self.path`." | |
| with open(self.path/fn, 'w') as f: f.writelines([f'{o}\n' for o in self._relative_item_paths()]) | |
| def filter_by_func(self, func:Callable)->'ItemList': | |
| "Only keep elements for which `func` returns `True`." | |
| self.items = array([o for o in self.items if func(o)]) | |
| return self | |
| def filter_by_folder(self, include=None, exclude=None): | |
| "Only keep filenames in `include` folder or reject the ones in `exclude`." | |
| include,exclude = listify(include),listify(exclude) | |
| def _inner(o): | |
| if isinstance(o, Path): n = o.relative_to(self.path).parts[0] | |
| else: n = o.split(os.path.sep)[len(str(self.path).split(os.path.sep))] | |
| if include and not n in include: return False | |
| if exclude and n in exclude: return False | |
| return True | |
| return self.filter_by_func(_inner) | |
| def filter_by_rand(self, p:float, seed:int=None): | |
| "Keep random sample of `items` with probability `p` and an optional `seed`." | |
| if seed is not None: set_all_seed(seed) | |
| return self.filter_by_func(lambda o: rand_bool(p)) | |
| def no_split(self): | |
| warn("`no_split` is deprecated, please use `split_none`.") | |
| return self.split_none() | |
| def split_none(self): | |
| "Don't split the data and create an empty validation set." | |
| val = self[[]] | |
| val.ignore_empty = True | |
| return self._split(self.path, self, val) | |
| def split_by_list(self, train, valid): | |
| "Split the data between `train` and `valid`." | |
| return self._split(self.path, train, valid) | |
| def split_by_idxs(self, train_idx, valid_idx): | |
| "Split the data between `train_idx` and `valid_idx`." | |
| return self.split_by_list(self[train_idx], self[valid_idx]) | |
| def split_by_idx(self, valid_idx:Collection[int])->'ItemLists': | |
| "Split the data according to the indexes in `valid_idx`." | |
| #train_idx = [i for i in range_of(self.items) if i not in valid_idx] | |
| train_idx = np.setdiff1d(arange_of(self.items), valid_idx) | |
| return self.split_by_idxs(train_idx, valid_idx) | |
| def _get_by_folder(self, name): | |
| return [i for i in range_of(self) if (self.items[i].parts[self.num_parts] if isinstance(self.items[i], Path) | |
| else self.items[i].split(os.path.sep)[0]) == name ] | |
| def split_by_folder(self, train:str='train', valid:str='valid')->'ItemLists': | |
| "Split the data depending on the folder (`train` or `valid`) in which the filenames are." | |
| return self.split_by_idxs(self._get_by_folder(train), self._get_by_folder(valid)) | |
| def random_split_by_pct(self, valid_pct:float=0.2, seed:int=None): | |
| warn("`random_split_by_pct` is deprecated, please use `split_by_rand_pct`.") | |
| return self.split_by_rand_pct(valid_pct=valid_pct, seed=seed) | |
| def split_by_rand_pct(self, valid_pct:float=0.2, seed:int=None)->'ItemLists': | |
| "Split the items randomly by putting `valid_pct` in the validation set, optional `seed` can be passed." | |
| if valid_pct==0.: return self.split_none() | |
| if seed is not None: np.random.seed(seed) | |
| rand_idx = np.random.permutation(range_of(self)) | |
| cut = int(valid_pct * len(self)) | |
| return self.split_by_idx(rand_idx[:cut]) | |
| def split_subsets(self, train_size:float, valid_size:float, seed=None) -> 'ItemLists': | |
| "Split the items into train set with size `train_size * n` and valid set with size `valid_size * n`." | |
| assert 0 < train_size < 1 | |
| assert 0 < valid_size < 1 | |
| assert train_size + valid_size <= 1. | |
| if seed is not None: np.random.seed(seed) | |
| n = len(self.items) | |
| rand_idx = np.random.permutation(range(n)) | |
| train_cut, valid_cut = int(train_size * n), int(valid_size * n) | |
| return self.split_by_idxs(rand_idx[:train_cut], rand_idx[-valid_cut:]) | |
| def split_by_valid_func(self, func:Callable)->'ItemLists': | |
| "Split the data by result of `func` (which returns `True` for validation set)." | |
| valid_idx = [i for i,o in enumerate(self.items) if func(o)] | |
| return self.split_by_idx(valid_idx) | |
| def split_by_files(self, valid_names:'ItemList')->'ItemLists': | |
| "Split the data by using the names in `valid_names` for validation." | |
| if isinstance(self.items[0], Path): return self.split_by_valid_func(lambda o: o.name in valid_names) | |
| else: return self.split_by_valid_func(lambda o: os.path.basename(o) in valid_names) | |
| def split_by_fname_file(self, fname:PathOrStr, path:PathOrStr=None)->'ItemLists': | |
| "Split the data by using the names in `fname` for the validation set. `path` will override `self.path`." | |
| path = Path(ifnone(path, self.path)) | |
| valid_names = loadtxt_str(path/fname) | |
| return self.split_by_files(valid_names) | |
| def split_from_df(self, col:IntsOrStrs=2): | |
| "Split the data from the `col` in the dataframe in `self.inner_df`." | |
| valid_idx = np.where(self.inner_df.iloc[:,df_names_to_idx(col, self.inner_df)])[0] | |
| return self.split_by_idx(valid_idx) | |
| def get_label_cls(self, labels, label_cls:Callable=None, label_delim:str=None, **kwargs): | |
| "Return `label_cls` or guess one from the first element of `labels`." | |
| if label_cls is not None: return label_cls | |
| if self.label_cls is not None: return self.label_cls | |
| if label_delim is not None: return MultiCategoryList | |
| it = index_row(labels,0) | |
| if isinstance(it, (float, np.float32)): return FloatList | |
| if isinstance(try_int(it), (str, Integral)): return CategoryList | |
| if isinstance(it, Collection): return MultiCategoryList | |
| return ItemList #self.__class__ | |
| def _label_from_list(self, labels:Iterator, label_cls:Callable=None, from_item_lists:bool=False, **kwargs)->'LabelList': | |
| "Label `self.items` with `labels`." | |
| if not from_item_lists: | |
| raise Exception("Your data isn't split, if you don't want a validation set, please use `split_none`.") | |
| labels = array(labels, dtype=object) | |
| label_cls = self.get_label_cls(labels, label_cls=label_cls, **kwargs) | |
| y = label_cls(labels, path=self.path, **kwargs) | |
| res = self._label_list(x=self, y=y) | |
| return res | |
| def label_from_df(self, cols:IntsOrStrs=1, label_cls:Callable=None, **kwargs): | |
| "Label `self.items` from the values in `cols` in `self.inner_df`." | |
| labels = self.inner_df.iloc[:,df_names_to_idx(cols, self.inner_df)] | |
| assert labels.isna().sum().sum() == 0, f"You have NaN values in column(s) {cols} of your dataframe, please fix it." | |
| if is_listy(cols) and len(cols) > 1 and (label_cls is None or label_cls == MultiCategoryList): | |
| new_kwargs,label_cls = dict(one_hot=True, classes= cols),MultiCategoryList | |
| kwargs = {**new_kwargs, **kwargs} | |
| return self._label_from_list(_maybe_squeeze(labels), label_cls=label_cls, **kwargs) | |
| def label_const(self, const:Any=0, label_cls:Callable=None, **kwargs)->'LabelList': | |
| "Label every item with `const`." | |
| return self.label_from_func(func=lambda o: const, label_cls=label_cls, **kwargs) | |
| def label_empty(self, **kwargs): | |
| "Label every item with an `EmptyLabel`." | |
| kwargs['label_cls'] = EmptyLabelList | |
| return self.label_from_func(func=lambda o: 0., **kwargs) | |
| def label_from_func(self, func:Callable, label_cls:Callable=None, **kwargs)->'LabelList': | |
| "Apply `func` to every input to get its label." | |
| return self._label_from_list([func(o) for o in self.items], label_cls=label_cls, **kwargs) | |
| def label_from_folder(self, label_cls:Callable=None, **kwargs)->'LabelList': | |
| "Give a label to each filename depending on its folder." | |
| return self.label_from_func(func=lambda o: (o.parts if isinstance(o, Path) else o.split(os.path.sep))[-2], | |
| label_cls=label_cls, **kwargs) | |
| def label_from_re(self, pat:str, full_path:bool=False, label_cls:Callable=None, **kwargs)->'LabelList': | |
| "Apply the re in `pat` to determine the label of every filename. If `full_path`, search in the full name." | |
| pat = re.compile(pat) | |
| def _inner(o): | |
| s = str((os.path.join(self.path,o) if full_path else o).as_posix()) | |
| res = pat.search(s) | |
| assert res,f'Failed to find "{pat}" in "{s}"' | |
| return res.group(1) | |
| return self.label_from_func(_inner, label_cls=label_cls, **kwargs) | |
| def databunch(self, **kwargs): | |
| "To throw a clear error message when the data wasn't split and labeled." | |
| raise Exception("Your data is neither split nor labeled, can't turn it into a `DataBunch` yet.") | |
| class EmptyLabelList(ItemList): | |
| "Basic `ItemList` for dummy labels." | |
| def get(self, i): return EmptyLabel() | |
| def reconstruct(self, t:Tensor, x:Tensor=None): | |
| if len(t.size()) == 0: return EmptyLabel() | |
| return self.x.reconstruct(t,x) if has_arg(self.x.reconstruct, 'x') else self.x.reconstruct(t) | |
| class CategoryProcessor(PreProcessor): | |
| "`PreProcessor` that create `classes` from `ds.items` and handle the mapping." | |
| def __init__(self, ds:ItemList): | |
| self.create_classes(ds.classes) | |
| self.state_attrs,self.warns = ['classes'],[] | |
| def create_classes(self, classes): | |
| self.classes = classes | |
| if classes is not None: self.c2i = {v:k for k,v in enumerate(classes)} | |
| def generate_classes(self, items): | |
| "Generate classes from `items` by taking the sorted unique values." | |
| return uniqueify(items, sort=True) | |
| def process_one(self,item): | |
| if isinstance(item, EmptyLabel): return item | |
| res = self.c2i.get(item,None) | |
| if res is None: self.warns.append(str(item)) | |
| return res | |
| def process(self, ds): | |
| if self.classes is None: self.create_classes(self.generate_classes(ds.items)) | |
| ds.classes = self.classes | |
| ds.c2i = self.c2i | |
| super().process(ds) | |
| def __getstate__(self): return {n:getattr(self,n) for n in self.state_attrs} | |
| def __setstate__(self, state:dict): | |
| self.create_classes(state['classes']) | |
| self.state_attrs = state.keys() | |
| for n in state.keys(): | |
| if n!='classes': setattr(self, n, state[n]) | |
| class CategoryListBase(ItemList): | |
| "Basic `ItemList` for classification." | |
| def __init__(self, items:Iterator, classes:Collection=None, **kwargs): | |
| self.classes=classes | |
| self.filter_missing_y = True | |
| super().__init__(items, **kwargs) | |
| self.copy_new.append('classes') | |
| def c(self): return len(self.classes) | |
| class CategoryList(CategoryListBase): | |
| "Basic `ItemList` for single classification labels." | |
| _processor=CategoryProcessor | |
| def __init__(self, items:Iterator, classes:Collection=None, label_delim:str=None, **kwargs): | |
| super().__init__(items, classes=classes, **kwargs) | |
| self.loss_func = CrossEntropyFlat() | |
| def get(self, i): | |
| o = self.items[i] | |
| if o is None: return None | |
| return Category(o, self.classes[o]) | |
| def analyze_pred(self, pred, thresh:float=0.5): return pred.argmax() | |
| def reconstruct(self, t): | |
| return Category(t, self.classes[t]) | |
| class MultiCategoryProcessor(CategoryProcessor): | |
| "`PreProcessor` that create `classes` from `ds.items` and handle the mapping." | |
| def __init__(self, ds:ItemList, one_hot:bool=False): | |
| super().__init__(ds) | |
| self.one_hot = one_hot | |
| self.state_attrs.append('one_hot') | |
| def process_one(self,item): | |
| if self.one_hot or isinstance(item, EmptyLabel): return item | |
| res = [super(MultiCategoryProcessor, self).process_one(o) for o in item] | |
| return [r for r in res if r is not None] | |
| def generate_classes(self, items): | |
| "Generate classes from `items` by taking the sorted unique values." | |
| classes = set() | |
| for c in items: classes = classes.union(set(c)) | |
| classes = list(classes) | |
| classes.sort() | |
| return classes | |
| class MultiCategoryList(CategoryListBase): | |
| "Basic `ItemList` for multi-classification labels." | |
| _processor=MultiCategoryProcessor | |
| def __init__(self, items:Iterator, classes:Collection=None, label_delim:str=None, one_hot:bool=False, **kwargs): | |
| if label_delim is not None: items = array(csv.reader(items.astype(str), delimiter=label_delim)) | |
| super().__init__(items, classes=classes, **kwargs) | |
| if one_hot: | |
| assert classes is not None, "Please provide class names with `classes=...`" | |
| self.processor = [MultiCategoryProcessor(self, one_hot=True)] | |
| self.loss_func = BCEWithLogitsFlat() | |
| self.one_hot = one_hot | |
| self.copy_new += ['one_hot'] | |
| def get(self, i): | |
| o = self.items[i] | |
| if o is None: return None | |
| if self.one_hot: return self.reconstruct(o.astype(np.float32)) | |
| return MultiCategory(one_hot(o, self.c), [self.classes[p] for p in o], o) | |
| def analyze_pred(self, pred, thresh:float=0.5): | |
| return (pred >= thresh).float() | |
| def reconstruct(self, t): | |
| o = [i for i in range(self.c) if t[i] == 1.] | |
| return MultiCategory(t, [self.classes[p] for p in o], o) | |
| class FloatList(ItemList): | |
| "`ItemList` suitable for storing the floats in items for regression. Will add a `log` if this flag is `True`." | |
| def __init__(self, items:Iterator, log:bool=False, classes:Collection=None, **kwargs): | |
| super().__init__(np.array(items, dtype=np.float32), **kwargs) | |
| self.log = log | |
| self.copy_new.append('log') | |
| self.c = self.items.shape[1] if len(self.items.shape) > 1 else 1 | |
| self.loss_func = MSELossFlat() | |
| def get(self, i): | |
| o = super().get(i) | |
| return FloatItem(np.log(o) if self.log else o) | |
| def reconstruct(self,t): return FloatItem(t.numpy()) | |
| class ItemLists(): | |
| "An `ItemList` for each of `train` and `valid` (optional `test`)." | |
| def __init__(self, path:PathOrStr, train:ItemList, valid:ItemList): | |
| self.path,self.train,self.valid,self.test = Path(path),train,valid,None | |
| if not self.train.ignore_empty and len(self.train.items) == 0: | |
| warn("Your training set is empty. If this is by design, pass `ignore_empty=True` to remove this warning.") | |
| if not self.valid.ignore_empty and len(self.valid.items) == 0: | |
| warn("""Your validation set is empty. If this is by design, use `split_none()` | |
| or pass `ignore_empty=True` when labelling to remove this warning.""") | |
| if isinstance(self.train, LabelList): self.__class__ = LabelLists | |
| def __dir__(self)->List[str]: | |
| default_dir = dir(type(self)) + list(self.__dict__.keys()) | |
| add_ons = ['label_const', 'label_empty', 'label_from_df', 'label_from_folder', 'label_from_func', | |
| 'label_from_list', 'label_from_re'] | |
| return default_dir + add_ons | |
| def __repr__(self)->str: | |
| return f'{self.__class__.__name__};\n\nTrain: {self.train};\n\nValid: {self.valid};\n\nTest: {self.test}' | |
| def __getattr__(self, k): | |
| ft = getattr(self.train, k) | |
| if not isinstance(ft, Callable): return ft | |
| fv = getattr(self.valid, k) | |
| assert isinstance(fv, Callable) | |
| def _inner(*args, **kwargs): | |
| self.train = ft(*args, from_item_lists=True, **kwargs) | |
| assert isinstance(self.train, LabelList) | |
| kwargs['label_cls'] = self.train.y.__class__ | |
| self.valid = fv(*args, from_item_lists=True, **kwargs) | |
| self.__class__ = LabelLists | |
| self.process() | |
| return self | |
| return _inner | |
| def __setstate__(self,data:Any): self.__dict__.update(data) | |
| def lists(self): | |
| res = [self.train,self.valid] | |
| if self.test is not None: res.append(self.test) | |
| return res | |
| def label_from_lists(self, train_labels:Iterator, valid_labels:Iterator, label_cls:Callable=None, **kwargs)->'LabelList': | |
| "Use the labels in `train_labels` and `valid_labels` to label the data. `label_cls` will overwrite the default." | |
| label_cls = self.train.get_label_cls(train_labels, label_cls) | |
| self.train = self.train._label_list(x=self.train, y=label_cls(train_labels, **kwargs)) | |
| self.valid = self.valid._label_list(x=self.valid, y=self.train.y.new(valid_labels, **kwargs)) | |
| self.__class__ = LabelLists | |
| self.process() | |
| return self | |
| def transform(self, tfms:Optional[Tuple[TfmList,TfmList]]=(None,None), **kwargs): | |
| "Set `tfms` to be applied to the xs of the train and validation set." | |
| if not tfms: tfms=(None,None) | |
| assert is_listy(tfms) and len(tfms) == 2, "Please pass a list of two lists of transforms (train and valid)." | |
| self.train.transform(tfms[0], **kwargs) | |
| self.valid.transform(tfms[1], **kwargs) | |
| if self.test: self.test.transform(tfms[1], **kwargs) | |
| return self | |
| def transform_y(self, tfms:Optional[Tuple[TfmList,TfmList]]=(None,None), **kwargs): | |
| "Set `tfms` to be applied to the ys of the train and validation set." | |
| if not tfms: tfms=(None,None) | |
| self.train.transform_y(tfms[0], **kwargs) | |
| self.valid.transform_y(tfms[1], **kwargs) | |
| if self.test: self.test.transform_y(tfms[1], **kwargs) | |
| return self | |
| def databunch(self, **kwargs): | |
| "To throw a clear error message when the data wasn't labeled." | |
| raise Exception("Your data isn't labeled, can't turn it into a `DataBunch` yet!") | |
| class LabelLists(ItemLists): | |
| "A `LabelList` for each of `train` and `valid` (optional `test`)." | |
| def get_processors(self): | |
| "Read the default class processors if none have been set." | |
| procs_x,procs_y = listify(self.train.x._processor),listify(self.train.y._processor) | |
| xp = ifnone(self.train.x.processor, [p(ds=self.train.x) for p in procs_x]) | |
| yp = ifnone(self.train.y.processor, [p(ds=self.train.y) for p in procs_y]) | |
| return xp,yp | |
| def process(self): | |
| "Process the inner datasets." | |
| xp,yp = self.get_processors() | |
| for ds,n in zip(self.lists, ['train','valid','test']): ds.process(xp, yp, name=n) | |
| #progress_bar clear the outputs so in some case warnings issued during processing disappear. | |
| for ds in self.lists: | |
| if getattr(ds, 'warn', False): warn(ds.warn) | |
| return self | |
| def filter_by_func(self, func:Callable): | |
| for ds in self.lists: ds.filter_by_func(func) | |
| return self | |
| def databunch(self, path:PathOrStr=None, bs:int=64, val_bs:int=None, num_workers:int=defaults.cpus, | |
| dl_tfms:Optional[Collection[Callable]]=None, device:torch.device=None, collate_fn:Callable=data_collate, | |
| no_check:bool=False, **kwargs)->'DataBunch': | |
| "Create an `DataBunch` from self, `path` will override `self.path`, `kwargs` are passed to `DataBunch.create`." | |
| path = Path(ifnone(path, self.path)) | |
| data = self.x._bunch.create(self.train, self.valid, test_ds=self.test, path=path, bs=bs, val_bs=val_bs, | |
| num_workers=num_workers, dl_tfms=dl_tfms, device=device, collate_fn=collate_fn, no_check=no_check, **kwargs) | |
| if getattr(self, 'normalize', False):#In case a normalization was serialized | |
| norm = self.normalize | |
| data.normalize((norm['mean'], norm['std']), do_x=norm['do_x'], do_y=norm['do_y']) | |
| data.label_list = self | |
| return data | |
| def add_test(self, items:Iterator, label:Any=None, tfms=None, tfm_y=None): | |
| "Add test set containing `items` with an arbitrary `label`." | |
| # if no label passed, use label of first training item | |
| if label is None: labels = EmptyLabelList([0] * len(items)) | |
| else: labels = self.valid.y.new([label] * len(items)).process() | |
| if isinstance(items, MixedItemList): items = self.valid.x.new(items.item_lists, inner_df=items.inner_df).process() | |
| elif isinstance(items, ItemList): items = self.valid.x.new(items.items, inner_df=items.inner_df).process() | |
| else: items = self.valid.x.new(items).process() | |
| self.test = self.valid.new(items, labels, tfms=tfms, tfm_y=tfm_y) | |
| return self | |
| def add_test_folder(self, test_folder:str='test', label:Any=None, tfms=None, tfm_y=None): | |
| "Add test set containing items from `test_folder` and an arbitrary `label`." | |
| # note: labels will be ignored if available in the test dataset | |
| items = self.x.__class__.from_folder(self.path/test_folder) | |
| return self.add_test(items.items, label=label, tfms=tfms, tfm_y=tfm_y) | |
| def load_state(cls, path:PathOrStr, state:dict): | |
| "Create a `LabelLists` with empty sets from the serialized `state`." | |
| path = Path(path) | |
| train_ds = LabelList.load_state(path, state) | |
| valid_ds = LabelList.load_state(path, state) | |
| return LabelLists(path, train=train_ds, valid=valid_ds) | |
| def load_empty(cls, path:PathOrStr, fn:PathOrStr='export.pkl'): | |
| "Create a `LabelLists` with empty sets from the serialized file in `path/fn`." | |
| path = Path(path) | |
| state = torch.load(open(path/fn, 'rb')) | |
| return LabelLists.load_state(path, state) | |
| def _check_kwargs(ds:ItemList, tfms:TfmList, **kwargs): | |
| tfms = listify(tfms) | |
| if (tfms is None or len(tfms) == 0) and len(kwargs) == 0: return | |
| if len(ds.items) >= 1: | |
| x = ds[0] | |
| try: x.apply_tfms(tfms, **kwargs) | |
| except Exception as e: | |
| raise Exception(f"It's not possible to apply those transforms to your dataset:\n {e}") | |
| class LabelList(Dataset): | |
| "A list of inputs `x` and labels `y` with optional `tfms`." | |
| def __init__(self, x:ItemList, y:ItemList, tfms:TfmList=None, tfm_y:bool=False, **kwargs): | |
| self.x,self.y,self.tfm_y = x,y,tfm_y | |
| self.y.x = x | |
| self.item=None | |
| self.transform(tfms, **kwargs) | |
| def __len__(self)->int: return len(self.x) if self.item is None else 1 | |
| def set_item(self,item): | |
| "For inference, will briefly replace the dataset with one that only contains `item`." | |
| self.item = self.x.process_one(item) | |
| yield None | |
| self.item = None | |
| def __repr__(self)->str: | |
| items = [self[i] for i in range(min(5,len(self.items)))] | |
| res = f'{self.__class__.__name__} ({len(self.items)} items)\n' | |
| res += f'x: {self.x.__class__.__name__}\n{show_some([i[0] for i in items])}\n' | |
| res += f'y: {self.y.__class__.__name__}\n{show_some([i[1] for i in items])}\n' | |
| return res + f'Path: {self.path}' | |
| def predict(self, res): | |
| "Delegates predict call on `res` to `self.y`." | |
| return self.y.predict(res) | |
| def c(self): return self.y.c | |
| def new(self, x, y, tfms=None, tfm_y=None, **kwargs)->'LabelList': | |
| tfms,tfm_y = ifnone(tfms, self.tfms),ifnone(tfm_y, self.tfm_y) | |
| if isinstance(x, ItemList): | |
| return self.__class__(x, y, tfms=tfms, tfm_y=tfm_y, **self.tfmargs) | |
| else: | |
| return self.new(self.x.new(x, **kwargs), self.y.new(y, **kwargs), tfms=tfms, tfm_y=tfm_y).process() | |
| def __getattr__(self,k:str)->Any: | |
| x = super().__getattribute__('x') | |
| res = getattr(x, k, None) | |
| if res is not None and k not in ['classes', 'c']: return res | |
| y = super().__getattribute__('y') | |
| res = getattr(y, k, None) | |
| if res is not None: return res | |
| raise AttributeError(k) | |
| def __setstate__(self,data:Any): self.__dict__.update(data) | |
| def __getitem__(self,idxs:Union[int,np.ndarray])->'LabelList': | |
| "return a single (x, y) if `idxs` is an integer or a new `LabelList` object if `idxs` is a range." | |
| idxs = try_int(idxs) | |
| if isinstance(idxs, Integral): | |
| if self.item is None: x,y = self.x[idxs],self.y[idxs] | |
| else: x,y = self.item ,0 | |
| if self.tfms or self.tfmargs: | |
| x = x.apply_tfms(self.tfms, is_x=True, **self.tfmargs) | |
| if hasattr(self, 'tfms_y') and self.tfm_y and self.item is None: | |
| y = y.apply_tfms(self.tfms_y, is_x=False, **{**self.tfmargs_y, 'do_resolve':False}) | |
| if y is None: y=0 | |
| return x,y | |
| else: return self.new(self.x[idxs], self.y[idxs]) | |
| def to_df(self)->None: | |
| "Create `pd.DataFrame` containing `items` from `self.x` and `self.y`." | |
| return pd.DataFrame(dict(x=self.x._relative_item_paths(), y=[str(o) for o in self.y])) | |
| def to_csv(self, dest:str)->None: | |
| "Save `self.to_df()` to a CSV file in `self.path`/`dest`." | |
| self.to_df().to_csv(self.path/dest, index=False) | |
| def get_state(self, **kwargs): | |
| "Return the minimal state for export." | |
| state = {'x_cls':self.x.__class__, 'x_proc':self.x.processor, | |
| 'y_cls':self.y.__class__, 'y_proc':self.y.processor, | |
| 'tfms':self.tfms, 'tfm_y':self.tfm_y, 'tfmargs':self.tfmargs} | |
| if hasattr(self, 'tfms_y'): state['tfms_y'] = self.tfms_y | |
| if hasattr(self, 'tfmargs_y'): state['tfmargs_y'] = self.tfmargs_y | |
| return {**state, **kwargs} | |
| def export(self, fn:PathOrStr, **kwargs): | |
| "Export the minimal state and save it in `fn` to load an empty version for inference." | |
| pickle.dump(self.get_state(**kwargs), open(fn, 'wb')) | |
| def load_empty(cls, path:PathOrStr, fn:PathOrStr): | |
| "Load the state in `fn` to create an empty `LabelList` for inference." | |
| return cls.load_state(path, pickle.load(open(Path(path)/fn, 'rb'))) | |
| def load_state(cls, path:PathOrStr, state:dict) -> 'LabelList': | |
| "Create a `LabelList` from `state`." | |
| x = state['x_cls']([], path=path, processor=state['x_proc'], ignore_empty=True) | |
| y = state['y_cls']([], path=path, processor=state['y_proc'], ignore_empty=True) | |
| res = cls(x, y, tfms=state['tfms'], tfm_y=state['tfm_y'], **state['tfmargs']).process() | |
| if state.get('tfms_y', False): res.tfms_y = state['tfms_y'] | |
| if state.get('tfmargs_y', False): res.tfmargs_y = state['tfmargs_y'] | |
| if state.get('normalize', False): res.normalize = state['normalize'] | |
| return res | |
| def process(self, xp:PreProcessor=None, yp:PreProcessor=None, name:str=None): | |
| "Launch the processing on `self.x` and `self.y` with `xp` and `yp`." | |
| self.y.process(yp) | |
| if getattr(self.y, 'filter_missing_y', False): | |
| filt = array([o is None for o in self.y.items]) | |
| if filt.sum()>0: | |
| #Warnings are given later since progress_bar might make them disappear. | |
| self.warn = f"You are labelling your items with {self.y.__class__.__name__}.\n" | |
| self.warn += f"Your {name} set contained the following unknown labels, the corresponding items have been discarded.\n" | |
| for p in self.y.processor: | |
| if len(getattr(p, 'warns', [])) > 0: | |
| warnings = list(set(p.warns)) | |
| self.warn += ', '.join(warnings[:5]) | |
| if len(warnings) > 5: self.warn += "..." | |
| p.warns = [] | |
| self.x,self.y = self.x[~filt],self.y[~filt] | |
| self.x.process(xp) | |
| return self | |
| def filter_by_func(self, func:Callable): | |
| filt = array([func(x,y) for x,y in zip(self.x.items, self.y.items)]) | |
| self.x,self.y = self.x[~filt],self.y[~filt] | |
| return self | |
| def transform(self, tfms:TfmList, tfm_y:bool=None, **kwargs): | |
| "Set the `tfms` and `tfm_y` value to be applied to the inputs and targets." | |
| _check_kwargs(self.x, tfms, **kwargs) | |
| if tfm_y is None: tfm_y = self.tfm_y | |
| tfms_y = None if tfms is None else list(filter(lambda t: getattr(t, 'use_on_y', True), listify(tfms))) | |
| if tfm_y: _check_kwargs(self.y, tfms_y, **kwargs) | |
| self.tfms,self.tfmargs = tfms,kwargs | |
| self.tfm_y,self.tfms_y,self.tfmargs_y = tfm_y,tfms_y,kwargs | |
| return self | |
| def transform_y(self, tfms:TfmList=None, **kwargs): | |
| "Set `tfms` to be applied to the targets only." | |
| tfms_y = list(filter(lambda t: getattr(t, 'use_on_y', True), listify(self.tfms if tfms is None else tfms))) | |
| tfmargs_y = {**self.tfmargs, **kwargs} if tfms is None else kwargs | |
| _check_kwargs(self.y, tfms_y, **tfmargs_y) | |
| self.tfm_y,self.tfms_y,self.tfmargs_y=True,tfms_y,tfmargs_y | |
| return self | |
| def databunch(self, **kwargs): | |
| "To throw a clear error message when the data wasn't split." | |
| raise Exception("Your data isn't split, if you don't want a validation set, please use `split_none`") | |
| def _databunch_load_empty(cls, path, fname:str='export.pkl'): | |
| "Load an empty `DataBunch` from the exported file in `path/fname` with optional `tfms`." | |
| sd = LabelLists.load_empty(path, fn=fname) | |
| return sd.databunch() | |
| DataBunch.load_empty = _databunch_load_empty | |
| class MixedProcessor(PreProcessor): | |
| def __init__(self, procs:Collection[Union[PreProcessor, Collection[PreProcessor]]]): | |
| self.procs = procs | |
| def process_one(self, item:Any): | |
| res = [] | |
| for procs, i in zip(self.procs, item): | |
| for p in procs: i = p.process_one(i) | |
| res.append(i) | |
| return res | |
| def process(self, ds:Collection): | |
| for procs, il in zip(self.procs, ds.item_lists): | |
| for p in procs: p.process(il) | |
| class MixedItem(ItemBase): | |
| def __init__(self, items): | |
| self.obj = items | |
| self.data = [item.data for item in items] | |
| def __repr__(self): return '\n'.join([f'{self.__class__.__name__}'] + [repr(item) for item in self.obj]) | |
| def apply_tfms(self, tfms:Collection, **kwargs): | |
| self.obj = [item.apply_tfms(t, **kwargs) for item,t in zip(self.obj, tfms)] | |
| self.data = [item.data for item in self.obj] | |
| return self | |
| class MixedItemList(ItemList): | |
| def __init__(self, item_lists, path:PathOrStr=None, label_cls:Callable=None, inner_df:Any=None, | |
| x:'ItemList'=None, ignore_empty:bool=False, processor=None): | |
| self.item_lists = item_lists | |
| if processor is None: | |
| default_procs = [[p(ds=il) for p in listify(il._processor)] for il in item_lists] | |
| processor = MixedProcessor([ifnone(il.processor, dp) for il,dp in zip(item_lists, default_procs)]) | |
| items = range_of(item_lists[0]) if len(item_lists) >= 1 else [] | |
| if path is None and len(item_lists) >= 1: path = item_lists[0].path | |
| super().__init__(items, processor=processor, path=path, | |
| label_cls=label_cls, inner_df=inner_df, x=x, ignore_empty=ignore_empty) | |
| def new(self, item_lists, processor:PreProcessor=None, **kwargs)->'ItemList': | |
| "Create a new `ItemList` from `items`, keeping the same attributes." | |
| processor = ifnone(processor, self.processor) | |
| copy_d = {o:getattr(self,o) for o in self.copy_new} | |
| kwargs = {**copy_d, **kwargs} | |
| return self.__class__(item_lists, processor=processor, **kwargs) | |
| def get(self, i): | |
| return MixedItem([il.get(i) for il in self.item_lists]) | |
| def __getitem__(self,idxs:int)->Any: | |
| idxs = try_int(idxs) | |
| if isinstance(idxs, Integral): return self.get(idxs) | |
| else: | |
| item_lists = [il.new(il.items[idxs], inner_df=index_row(il.inner_df, idxs)) for il in self.item_lists] | |
| return self.new(item_lists, inner_df=index_row(self.inner_df, idxs)) | |